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  • About
  • The Global ETD Search service is a free service for researchers to find electronic theses and dissertations. This service is provided by the Networked Digital Library of Theses and Dissertations.
    Our metadata is collected from universities around the world. If you manage a university/consortium/country archive and want to be added, details can be found on the NDLTD website.
111

Modélisation de la dispersion atmosphérique sur un site industriel par combinaison d’automates cellulaires et de réseaux de neurones. / Turbulent atmospheric dispersion modelling on an industrial site using cellular automata and neural networks.

Lauret, Pierre 18 June 2014 (has links)
La dispersion atmosphérique de substances dangereuses est un évènement susceptible d’entrainer de graves conséquences. Sa modélisation est primordiale pour anticiper des situations accidentelles. L’objectif de ce travail fut de développer un modèle opérationnel, à la fois rapide et précis, prenant en compte la dispersion en champ proche sur un site industriel. L’approche développée s’appuie sur des modèles issus de l’intelligence artificielle : les réseaux de neurones et les automates cellulaires. L’utilisation des réseaux de neurones requiert l’apprentissage d’une base de données de dispersion : des simulations CFD k-ϵ dans ce travail. Différents paramètres sont évalués lors de l’apprentissage : échantillonnage et architecture du réseau. Trois méthodologies sont développées :La première méthode permet d’estimer la dispersion continue en champ libre, par réseaux de neurones seuls.La deuxième méthode utilise le réseau de neurones en tant que règle de transition de l’automate cellulaire pour le suivi de l’évolution d’une bouffée en champ libre.La troisième méthode sépare la problématique : le calcul de l’écoulement est effectué par les réseaux de neurones alors que le calcul de la dispersion est réalisé par la résolution de l’équation d’advection diffusion pour le suivi de l’évolution d’un nuage autour d’un obstacle cylindrique. La simulation de cas tests non-appris avec des simulations CFD permet de valider les méthodes développées. Les temps de calcul mis en œuvre pour réaliser la dispersion sont en accord avec la cinétique d’une situation de crise. L’application à des données réelles doit être développée dans la perspective de rendre les modèles opérationnels. / Atmospheric dispersion of hazardous materials is an event that could lead to serious consequences. Atmospheric dispersion is studied in particular in this work. Modeling of atmospheric dispersion is an important tool to anticipate industrial accidents. The objective of this work was to develop a model that is both fast and accurate, considering the dispersion in the near field on an industrial site. The approach developed is based on models from artificial intelligence: neural networks and cellular automata. Using neural networks requires training a database typical of the phenomenon, CFD k-ϵ simulations in this work. Training the neural network is carried out by identifying the important parameters: database sampling and network architecture. Three methodologies are developed:The first method estimates the continuous dispersion in free field by neural networks.The second method uses the neural network as a transition rule of the cellular automaton to estimate puff evolution in the free field.The third method divides the problem: the flow calculation is performed by the neural network and the calculation of the dispersion is realized by solving the advection diffusion equation to estimate the evolution of a cloud around a cylindrical obstacle. For the three methods, assessment of the generalization capabilities of the neural network has been validated on a test database and on unlearned cases. A comparison between developed method and CFD simulations is done on unlearned cases in order to validate them. Simulations computing time are low according to crisis duration. Application to real data should be developed to make these models operational.
112

Associação entre os valores do coeficiente de difusão aparente nas imagens de ressonância magnética ponderadas em difusão e marcadores prognósticos e de células tronco tumorais no câncer de mama em pacientes que realizaram quimioterapia neoadjuvante / Correlation among the values of apparent diffusion coefficient provided by diffusion-weighted magnetic resonance imaging, the cancer stem cells markers and the major prognostic factors in patients with invasive breast cancer treated with neoadjuvant chemotherapy

Oliveira, Tatiane Mendes Gonçalves de 08 April 2016 (has links)
As imagens de ressonância magnética (RM) ponderadas em Difusão são conhecidas como uma técnica funcional capaz de refletir alterações estruturais e celulares de neoplasias. No câncer de mama, a difusão e sua quantificação através dos valores do coeficiente de difusão aparente (CDA) têm sido utilizados para avaliar resposta tumoral após quimioterapia neoadjuvante (QTN). Os variados desfechos clínicos do câncer de mama, incluindo as diferentes respostas ao tratamento quimioterápico podem estar relacionados à heterogeneidade da doença. A presença das células tronco tumorais (CTT) é uma das hipóteses aceitas para explicar os diferentes comportamentos biológicos dos tumores. Este estudo buscou avaliar uma possível associação entre os valores de CDA nas neoplasias invasivas da mama e a presença de marcadores de CTT e os principais marcadores prognósticos da doença em pacientes tratadas com QTN. Foram avaliadas prospectiva e consecutivamente as imagens de RM pré-tratamento de 27 pacientes com câncer da mama que realizaram QTN seguida de cirurgia. Os valores de CDA média, p10, p25 e p50 foram obtidos através de duas mensurações, uma com único ROI e outra com múltiplos ROIs envolvendo toda extensão tumoral. Esses valores de CDA foram correlacionados: à quantificação por citometria de fluxo de CTT com fenótipos ESA+/CD44+/CD24-, células ESA+ com alta atividade ALDH1 e células ESA+/ABCG2+, à capacidade de formação de mamoesferas, e aos principais fatores prognósticos do câncer de mama, incluindo estágio clínico, doença axilar linfonodal, grau tumoral, receptores de estrógeno (RE), receptores de progesterona (RP) e superexpressão do HER2. Também foi realizada correlação dos valores de CDA com a resposta patológica completa após QTN. A presença de CTT, a capacidade de formação de mamoesferas e a resposta patológica completa não se correlacionaram aos valores de CDA. Para ambas as medidas e todos os parâmetros avaliados de CDA (x10-3mm2/s), os valores foram significantemente menores nos tumores com estágio clínico III e IV vs II (0,90±0,16; 1,02±0,18); com doença linfonodal após QTN vs axila livre (0,89±0,16; 1,01±0,17); RE+ vs RE- (0,90±0,16; 1,00±0,18); RP+ vs RP- (0,91±0,16; 0,98±0,18) e HER2+ vs HER2- (0,92±0,17;0,97±0,18). Tumores grau 1 apresentaram CDA com valores significativamente maiores em relação aos tumores grau 2 (diferença 0,18; CI: 0,03-0,33, p=0,02). Os valores de CDA dos tumores de mama pré-QTN não predizem a presença de CTT, a capacidade de formação de mamoesferas ou a resposta patológica completa, porém se correlacionam com o estágio clínico da doença, doença linfonodal axilar após QTN, grau tumoral e expressão das proteínas RE, RP e HER2, sendo um promissor marcador de agressividade tumoral / The diffusion-weighted magnetic resonance imaging (DWMRI) is a functional technique able to reflect structural and cellular changes in the tumors. In the breast cancer, the diffusion-weighted images and its numeric value known as the apparent diffusion coefficient (ADC) has been applied to evaluate pathologic response in patients treated with neoadjuvant chemotherapy (NC). The difference in the clinical results after breast cancer treatment, including different rates of responses to the NC has been associated to the heterogeneity of the disease. The presence of the breast cancer stem cells (BCSC) is an accepted hypothesis to explain the different biologic breast cancers behaviors. The aim of this study was to correlate the ADC value of invasive breast cancer with the presence of cancer stem cells markers and the major prognostic factors in patients treated with neoadjuvant chemotherapy. Prospectively, the MRI pre-treatment of twenty-seven consecutive patients with invasive breast cancer posteriorly treated with NC followed by surgery were evaluated. The ADC values mean, 10th percentile, 25th percentile, 50th percentile were obtained from two measurements, one of them with a unique ROI and the other with multiple ROIs encompassing the entire lesion. The ADC values were correlated to: presence of BCSCs (cell surface markers CD44+/CD24-, ABCG2 and ALDH1) identified by flow cytometric analysis, tumor grade, breast cancer staging, lymph nodal involvement, expression of estrogen receptors (ER), expression of progesterone receptors (PR) and expression of HER2. The assay mammospheres (Mammocult ®) were analyzed in 18 samples. Additionally, the ADC values were correlated to the pathologic complete response after QN treatment. There were no correlations between ADC values and breast cancer stem cells markers or mammospheres formation efficiency. For all parameters calculated, the ADC values (x10- 3 mm 2 /s) were lower in: breast cancer stage III and IV than stage II (0,90±0,16; 1,02±0,18), tumors with lymph node metastasis than without lymph node metastasis (0,89±0,16; 1,01±0,17), ER expression than ER negative (0,90±0,16; 1,00±0,18), PR expression than PR 10 negative (0,91±0,16; 0,98±0,18) and HER2 expression than HER2 negative (0,92±0,17; 0,97±0,18). The ADC values were significantly higher in grade-1 tumors (difference 0,18; CI: 0,03-0,33) compared to grade-2 tumors (p=0,02). The tumors values of ADC pretreatment were not correlated to the pathologic complete response after NC. The ADC values in pre-treatment invasive breast cancers are not a predictor of BCSC presence, mammospheres formation efficiency or pathologic complete response to QN. However it is correlated to the tumor grade, breast cancer staging, lymph nodal involvement, expression of ER, PR and HER2 and may represent a promising marker of tumor aggressiveness
113

Contribuição dos métodos de imagem no estudo das glândulas suprarrenais em pacientes com hiperplasia congênita de suprarrenal, com ênfase nas técnicas quantitativas por ressonância magnética / The role of imaging in evaluation of the adrenal glands in congenital adrenal hyperplasia, with an emphasis on quantitative magnetic resonance imaging

Teixeira, Sara Reis 02 September 2014 (has links)
Hiperplasia congênita de suprarrenal (CAH) compreende um grupo de transtornos hereditários decorrentes de erros inatos do metabolismo dos esteróides adrenais. O aumento das dimensões das glândulas suprarrenais é um marco morfológico na CAH que pode ser avaliado por métodos de imagem com signifitiva correlação com o controle hormonal dos pacientes. Porém, técnicas de imagem que forneçam informações qualitativas e quantitativas relativas à citoarquitetura das glândulas ainda não foram estabelecidas neste contexto. A difusão por ressonância magnética (DWI) é uma técnica que pode fornecer informações quantitativas dos tecidos através do valor do coeficiente de difusão aparente (ADC). O papel do ADC na avaliação de lesões tumorais adrenais já foi estudado, no entanto, o valor do ADC das glândulas suprarrenais normais ainda não foi descrito. O objetivo geral desta tese foi investigar a utilidade dos métodos de imagem na avaliação da CAH. Os objetivos específicos foram apresentar uma revisão dos métodos por imagem já estabelecidos para avaliação da CAH, validar o cálculo do ADC da glândula suprarrenal e avaliar se o ADC e as dimensões das glândulas suprarrenais poderiam auxiliar no manejo de pacientes com CAH, correlacionando-os com controle hormonal. Esta tese é baseada em artigos, nos quais estão mostrados a metodologia, resultados e discussões relativos a cada uma das etapas. O primeiro artigo, The role of imaging in congenital adrenal hyperplasia, trata de uma revisão sistemática de imagem em CAH, com ênfase em genitografia, ultrassonografia, tomografia computadorizada e ressonância magnética (MRI). O segundo artigo, Apparent Diffusion Coefficient (ADC) of the normal adrenal glands: premilinary results, teve como principal objetivo validar o método de medida do ADC das glândulas suprarrenais. No terceiro artigo, Quantitative magnetic resonance imaging in the evaluation of adrenal glands in children and young adults with congenital adrenal hyperplasia due to 21-hydroxylase deficiency, foram estudados os parâmetros quantitativos por MRI (ADC, volume e medidas lineares) das glândulas suprarrenais que poderiam estar relacionados ao controle hormonal dos pacientes com CAH. Medir o ADC das suprarrenais normais é factível e reprodutível. Em indivíduos saudáveis após a adrenarca o ADC é significativamente menor. Todavia, o ADC não foi capaz de diferenciar indivíduos controles de pacientes com CAH, assim como não apresentou correlação com o status hormonal dos pacientes. O volume e as medidas lineares das glândulas adrenais foram os melhores parâmetros quantitativos por MRI para diferenciar pacientes de indivíduos controles, com correlação positiva com o status hormonal recente dos pacientes com CAH. As dimensões das glândulas suprarrenais avaliadas por MRI podem ser utilizadas como ferramenta auxiliar no acompanhamento dos pacientes e mostrar rapidamente os efeitos da exposição a altos níveis de hormônio adrenocorticotrópico. Apesar de ocorrerem modificações celulares na CAH e de ter sido mostrado neste estudo que em pacientes sem doença hormonal conhecida o ADC é mais baixo após a adrenarca, estas alterações celulares que ocorrem na CAH não foram detectadas pelas medidas de ADC. / Congenital adrenal hyperplasia (CAH) is an autossomic recessive disorder caused by impaired steroidogenesis. A morphological hallmark in CAH is enlarged adrenal glands. Imaging studies have addressed mainly morphological aspects and dimensions of the adrenal glands, which correlate to the patients hormonal statuses. However, no imaging technique was used to evaluate changes in the adrenal glands at a cellular level in these patients. Diffusion-weighted magnetic resonance imaging (DWI) is a magnetic resonance imaging (MRI) technique with the ability to provide quantitative information about intracellular and extracellular space, given by the apparent diffusion coefficient (ADC) values. The role of ADC in evaluation of adrenal lesions has already been studied. However, ADC of the normal adrenals has not yet been described. The main purposes of this study were: to investigate the role of imaging in CAH, to validate the method of calculating ADC values of the normal adrenal glands and to assess hormonal status in patients with CAH and its correlation to quantitative MRI. This is an article-based thesis divided in three articles. The first article, The role of imaging in congenital adrenal hyperplasia, is a systematic review of imaging in congenital adrenal hyperplasia, with emphasis on genitography, ultrasonography, computed tomography and MRI. The article Apparent diffusion coefficient (ADC) of the normal adrenal glands: premilinary results aimed to validate the method of measuring ADC of the adrenal glands. The study of quantitative parameters (ADC, volume and linear measurements) of the adrenals evaluated by MRI that correlate with hormonal status in patients with CAH is described in the third article, Quantitative magnetic resonance imaging in evaluation of the adrenal glands in children and young adults with congenital adrenal hyperplasia due to 21-hydroxylase deficiency. Measuring ADC of the normal adrenal glands is feasible and reproducible. In healthy subjects, ADC values were significantly lower after adrenarche. However, neither a difference between ADC values of controls and patients, nor correlations with patients hormonal statuses were found. Volume and linear measurements of the adrenal glands were the best parameter to differentiate patients from controls. Moreover, a positive correlation was found between short-term hormonal control status and adrenal size. Adrenal size assessed by MRI might be a useful tool in the follow-up of patients with CAH. Although adrenal cell structure modifications in patients with CAH have been described, they were not detectable by DWI.
114

O estudo da acur?cia da resson?ncia magn?tica multiparam?trica no diagn?stico do c?ncer de pr?stata

Moraes, M?rcia Cristina Gon?alves de Oliveira 30 August 2017 (has links)
Submitted by PPG Medicina e Ci?ncias da Sa?de (medicina-pg@pucrs.br) on 2018-07-20T19:52:55Z No. of bitstreams: 1 M?RCIA_CRISTINA_GON?ALVES_DE_OLIVEIRA_MARAES.pdf: 3458644 bytes, checksum: 005c22fed45246220ed1f2e0de9490a9 (MD5) / Approved for entry into archive by Sheila Dias (sheila.dias@pucrs.br) on 2018-07-30T12:47:18Z (GMT) No. of bitstreams: 1 M?RCIA_CRISTINA_GON?ALVES_DE_OLIVEIRA_MARAES.pdf: 3458644 bytes, checksum: 005c22fed45246220ed1f2e0de9490a9 (MD5) / Made available in DSpace on 2018-07-30T12:58:07Z (GMT). No. of bitstreams: 1 M?RCIA_CRISTINA_GON?ALVES_DE_OLIVEIRA_MARAES.pdf: 3458644 bytes, checksum: 005c22fed45246220ed1f2e0de9490a9 (MD5) Previous issue date: 2017-08-30 / Abstract: Today, the incidence of prostate cancer is considered high, however, unlike other malignant tumours, there is an expressive number of cases in which prostate cancer does not progress to clinical disease. The management of patients with prostate cancer should be individually fitted due to the broad behaviour spectrum of this cancer, ranging from low grade tumours with low aggressive biological characteristics to high grade tumours with metastatic capacity. The possibility of predicting the future behavior of the disease allows the selection of the most appropriate conduct for each case. Studies have shown that mpMRI (multiparametric Magnetic Resonance Imaging) has a high negative predictive value for clinically significant prostate cancer, indicating that its application as a screening method and as assessment method of disease progression is promising. To standardize the protocols and reports of prostate mpMRI, the PI-RADS v2 (Prostate Imaging Reporting and Data System version 2) was launched in 2015. Multiparametric Magnetic Resonance Imaging standardized by PI-RADSv2 has been taking a prominent place in the management of prostate cancer, but the specificity and positive predictive value still need to be improved. Purpose: To assess whether the ADC (Apparent diffusion coefficient) value and tumour ADC ratio associated with PI-RADS v2 may increase accuracy in predicting clinically significant prostate cancer. Materials and methods: 91 individuals with suspected prostate cancer were retrospectively studied through mpMRI imaging standardized by PI-RADS v2, obtaining the ADC value from the tumour and the contralateral tissue. The findings were correlated to anatomopathological study (biopsy, prostatectomy or transurethral resection). Results: Accuracy, sensitivity, specificity, positive predictive value and negative predictive value for the consensus between the two reviewers using PI-RADS v2, category 3 associated with categories 4 and 5 for the detection of clinically significant cancer were 70.3%, 97.4%, 50.9%, 58.7% and 96.4% (p <0.001), respectively. The association of the ADC value (<0.795x10-3) to categories 3, 4 and 5 of the PI-RADSv2, in turn, demonstrated accuracy, specificity and positive predictive value of 78.9%, 84.9% and 76.5%; and the association with the tumour ADC ratio (<0.62) presented 77.5%, 86.5% and 77.4% of accuracy, specificity and positive predictive value, respectively. Conclusion: The association of the ADC value and the tumour ADC ratio to the PI-RADS v2 in mpMRI increases the accuracy, specificity and positive predictive value in the detection of aggressive prostate cancer, and may help in the screening of individuals who would undergo invasive procedures and radical therapy, or conservative management, as active surveillance or watchful waiting. / Introdu??o: ? considerada alta a incid?ncia de c?ncer de pr?stata na atualidade, contudo, diferentemente de outras neoplasias, existe um n?mero expressivo de casos em que o c?ncer de pr?stata n?o evolui para a doen?a cl?nica. Por este motivo, o manejo dos pacientes com neoplasia prost?tica deve ser moldado individualmente face ao amplo espectro que varia desde tumores de baixo grau, com caracter?sticas biol?gicas de baixa agressividade, a tumores de alto grau, com capacidade metast?tica. A possibilidade de prever o comportamento futuro da doen?a permite a sele??o da conduta mais adequada para cada caso. Estudos vem comprovando que a Resson?ncia Magn?tica multiparam?trica (RMmp) apresenta um alto valor preditivo negativo para o c?ncer de pr?stata com signific?ncia cl?nica, indicando que sua aplica??o como m?todo de triagem e na avalia??o da progress?o da doen?a ? promissora. Para padronizar os protocolos e os relat?rios da RMmp da pr?stata foi lan?ado em 2015 o PI-RADS v2 (?Prostate Imaging Reporting and Data System? vers?o 2). A RMmp padronizada pelo PI-RADS v2 vem assumindo um lugar de destaque no manejo do c?ncer de pr?stata, contudo, ainda s?o considerados baixos a Especificidade e o Valor Preditivo Positivo. Objetivos: Avaliar se o valor de ADC (?Apparent diffusion coefficient? = Coeficiente de Difus?o Aparente) e a raz?o tumoral do ADC associados ao PI-RADS v2 podem aumentar a acur?cia da RMmp na predi??o do c?ncer de pr?stata com signific?ncia clinica. Materiais e m?todos: Foram estudados retrospectivamente 91 indiv?duos com suspeita de c?ncer de pr?stata, submetidos a RMmp padronizada pelo PI-RADS v2, obtendo-se o ADC quantitativo da les?o e do tecido contralateral. Os achados foram correlacionados ao estudo anatomopatol?gico (bi?psia, prostatectomia ou ressec??o transuretral). Resultados: A acur?cia, sensibilidade, especificidade, valor preditivo positivo e valor preditivo negativo para o consenso entre os dois avaliadores utilizando a RMmp padronizada pelo PI-RADS v2, com a categoria 3 associada as categorias 4 e 5 para a detec??o do c?ncer com signific?ncia cl?nica foram 70,3%; 97,4%; 50,9%; 58,7% e 96,4% (p<0,001), respectivamente. A associa??o do valor do ADC (<0,795x10-3) ?s categorias 3, 4 e 5 do PI-RADS v2, por sua vez, demonstrou acur?cia, especificidade e valor preditivo positivo de 78,9%; 84,9% e 76,5%; e a associa??o com a raz?o tumoral do ADC (< 0,62), apresentou 77,5%; 86,5% e 77,4% de acur?cia, especificidade e valor preditivo positivo, respectivamente. Conclus?o: A associa??o do valor do ADC e da raz?o tumoral do ADC ao PI-RADS v2 na RMmp aumenta a acur?cia, especificidade e valor preditivo positivo na detec??o do c?ncer agressivo da pr?stata, podendo auxiliar na triagem dos indiv?duos e na decis?o entre a conduta agressiva, com procedimentos invasivos e terapia radical, ou a conduta conservadora, com vigil?ncia ativa ou observa??o.
115

Magnetic resonance microscopy of Aplysia neurons : studying neurotransmitter-modulated transport and response to stress / Microscopie par résonance magnétique des neurones d’aplysie : étude du transport actif en présence de neurotransmetteurs, et de la réponse au stress

Jelescu, Ileana O. 02 October 2013 (has links)
Les progrès technologiques récents en imagerie par résonance magnétique (IRM) ont ouvert la voie à une résolution spatiale de l’ordre de quelques microns, et donc à l’imagerie de cellules biologiques. Dans le cadre de ce projet, nous avons réalisé des expériences de microscopie IRM sur le système nerveux de l’aplysie (Aplysia californica), particulièrement adapté de par sa simplicité et de par la très grande taille de ses neurones, en vue d’étudier des processus à échelle cellulaire avec divers contrastes IRM. Les expériences d’imagerie ont été effectuées sur un aimant horizontal 17.2 Tesla, à des résolutions spatiales jusqu’à 25 µm isotrope. Le travail initial a consisté en la conception et fabrication de micro-antennes radiofréquences adaptées à la taille de neurones uniques et de ganglions. La première partie du projet a porté sur l’utilisation de l’ion manganèse (Mn2+) comme traceur de réseaux neuronaux dans le ganglion buccal de l’aplysie. Le manganèse (Mn) est un agent de contraste IRM qui pénètre dans les neurones par les canaux de calcium. La cartographie des projections axonales des neurones moteurs du ganglion dans chacun des nerfs périphériques a été établie. Il a également été démontré l’existence d’un transport actif du Mn2+ au sein du réseau neuronal activé par le neurotransmetteur dopamine. Dans un second temps, on s’est intéressé à deux méthodes de mesure de diffusion par IRM, à échelle microscopique. D’une part, un mécanisme de pondération en diffusion, DESIRE (Diffusion Enhancement of SIgnal and REsolution), original et particulièrement adapté à des échantillons petits, a été exploré. La séquence DESIRE a été implémentée en deux dimensions et testée avec succès sur fantôme. Le rehaussement mesuré était en accord avec les prévisions théoriques. Le grand défi à venir sera d’utiliser cette séquence pour acquérir des images de tissu biologique pondérées en diffusion avec un contraste unique. D’autre part, une séquence plus « classique » a été implémentée pour mesurer le coefficient de diffusion apparent (ADC) dans le tissu nerveux. Il s’agit d’une DP-FISP (Diffusion Prepared Fast Imaging with Steady-state free Precession) en trois dimensions, qui répond aux critères de résolution spatiale et de rapidité, avec un minimum d’artefacts. Cette séquence a permis d’étudier l’évolution de l’ADC de l’eau à différentes échelles du tissu nerveux en réponse à un stress cellulaire. Les deux sollicitations retenues étaient un choc hypotonique ou l’ajout d’ouabaïne. Des mesures d’ADC ont été effectuées sur des corps neuronaux isolés et sur du tissu de ganglion, avant et après sollicitation. Les deux types de stress ont entraîné une augmentation de l’ADC dans la cellule et une diminution globale de l’ADC dans le tissu. Ces résultats soutiennent l’hypothèse que la diffusion ralentie de l’eau habituellement observée dans un tissu ischémié (ou dans d’autres conditions associées à un gonflement cellulaire) est due à l’augmentation de surface membranaire. / Recent progress in magnetic resonance imaging (MRI) has opened the way for micron-scale resolution, and thus for imaging biological cells. In this thesis work, we performed magnetic resonance microscopy (MRM) on the nervous system of Aplysia californica, a model particularly suited due to its simplicity and to its very large neuronal cell bodies, in the aim of studying cellular-scale processes with various MR contrasts. Experiments were performed on a 17.2 Tesla horizontal magnet, at resolutions down to 25 µm isotropic. Initial work consisted in conceiving and building radiofrequency microcoils adapted to the size of single neurons and ganglia. The first major part of the project consisted in using the manganese ion (Mn2+) as neural tract tracer in the buccal ganglia of Aplysia. Manganese is an MR contrast agent that enters neurons via voltage-gated calcium channels. We performed the mapping of axonal projections from motor neurons into the peripheral nerves of the buccal ganglia. We also confirmed the existence of active Mn2+ transport inside the neural network upon activation with the neurotransmitter dopamine. In the second major part of the project, we tested the potential of two diffusion MRI sequences for microscopy. On the one hand, we explored a very original mechanism for diffusion weighting, DESIRE (Diffusion Enhancement of SIgnal and REsolution), particularly suited for small samples. The two-dimensional DESIRE sequence was implemented and successfully tested on phantoms. The measured enhancement was consistent with theoretical predictions. Using this sequence to produce diffusion weighted images with an unprecedented contrast in biological tissue remains a challenge. On the other hand, a more “standard” sequence was implemented to measure the apparent diffusion coefficient (ADC) in nervous tissue with MRM. This sequence was a three-dimensional DP-FISP (Diffusion Prepared Fast Imaging with Steady-state free Precession), which met criteria for high resolution in a short acquisition time, with minimal artifacts. Using this sequence, we studied the changes in water ADC at different scales in the nervous system, triggered by cellular challenges. The challenges were hypotonic shock or exposure to ouabain. ADC measurements were performed on single isolated neuronal bodies and on ganglia tissue, before and after challenge. Both types of stress produced an ADC increase inside the cell and an ADC decrease at tissue level. The results favor the hypothesis that the increase in membrane surface area associated with cell swelling is responsible for the decrease of water ADC in tissue, typically measured in ischemia or other conditions associated with cell swelling.
116

Associação entre os valores do coeficiente de difusão aparente nas imagens de ressonância magnética ponderadas em difusão e marcadores prognósticos e de células tronco tumorais no câncer de mama em pacientes que realizaram quimioterapia neoadjuvante / Correlation among the values of apparent diffusion coefficient provided by diffusion-weighted magnetic resonance imaging, the cancer stem cells markers and the major prognostic factors in patients with invasive breast cancer treated with neoadjuvant chemotherapy

Tatiane Mendes Gonçalves de Oliveira 08 April 2016 (has links)
As imagens de ressonância magnética (RM) ponderadas em Difusão são conhecidas como uma técnica funcional capaz de refletir alterações estruturais e celulares de neoplasias. No câncer de mama, a difusão e sua quantificação através dos valores do coeficiente de difusão aparente (CDA) têm sido utilizados para avaliar resposta tumoral após quimioterapia neoadjuvante (QTN). Os variados desfechos clínicos do câncer de mama, incluindo as diferentes respostas ao tratamento quimioterápico podem estar relacionados à heterogeneidade da doença. A presença das células tronco tumorais (CTT) é uma das hipóteses aceitas para explicar os diferentes comportamentos biológicos dos tumores. Este estudo buscou avaliar uma possível associação entre os valores de CDA nas neoplasias invasivas da mama e a presença de marcadores de CTT e os principais marcadores prognósticos da doença em pacientes tratadas com QTN. Foram avaliadas prospectiva e consecutivamente as imagens de RM pré-tratamento de 27 pacientes com câncer da mama que realizaram QTN seguida de cirurgia. Os valores de CDA média, p10, p25 e p50 foram obtidos através de duas mensurações, uma com único ROI e outra com múltiplos ROIs envolvendo toda extensão tumoral. Esses valores de CDA foram correlacionados: à quantificação por citometria de fluxo de CTT com fenótipos ESA+/CD44+/CD24-, células ESA+ com alta atividade ALDH1 e células ESA+/ABCG2+, à capacidade de formação de mamoesferas, e aos principais fatores prognósticos do câncer de mama, incluindo estágio clínico, doença axilar linfonodal, grau tumoral, receptores de estrógeno (RE), receptores de progesterona (RP) e superexpressão do HER2. Também foi realizada correlação dos valores de CDA com a resposta patológica completa após QTN. A presença de CTT, a capacidade de formação de mamoesferas e a resposta patológica completa não se correlacionaram aos valores de CDA. Para ambas as medidas e todos os parâmetros avaliados de CDA (x10-3mm2/s), os valores foram significantemente menores nos tumores com estágio clínico III e IV vs II (0,90±0,16; 1,02±0,18); com doença linfonodal após QTN vs axila livre (0,89±0,16; 1,01±0,17); RE+ vs RE- (0,90±0,16; 1,00±0,18); RP+ vs RP- (0,91±0,16; 0,98±0,18) e HER2+ vs HER2- (0,92±0,17;0,97±0,18). Tumores grau 1 apresentaram CDA com valores significativamente maiores em relação aos tumores grau 2 (diferença 0,18; CI: 0,03-0,33, p=0,02). Os valores de CDA dos tumores de mama pré-QTN não predizem a presença de CTT, a capacidade de formação de mamoesferas ou a resposta patológica completa, porém se correlacionam com o estágio clínico da doença, doença linfonodal axilar após QTN, grau tumoral e expressão das proteínas RE, RP e HER2, sendo um promissor marcador de agressividade tumoral / The diffusion-weighted magnetic resonance imaging (DWMRI) is a functional technique able to reflect structural and cellular changes in the tumors. In the breast cancer, the diffusion-weighted images and its numeric value known as the apparent diffusion coefficient (ADC) has been applied to evaluate pathologic response in patients treated with neoadjuvant chemotherapy (NC). The difference in the clinical results after breast cancer treatment, including different rates of responses to the NC has been associated to the heterogeneity of the disease. The presence of the breast cancer stem cells (BCSC) is an accepted hypothesis to explain the different biologic breast cancers behaviors. The aim of this study was to correlate the ADC value of invasive breast cancer with the presence of cancer stem cells markers and the major prognostic factors in patients treated with neoadjuvant chemotherapy. Prospectively, the MRI pre-treatment of twenty-seven consecutive patients with invasive breast cancer posteriorly treated with NC followed by surgery were evaluated. The ADC values mean, 10th percentile, 25th percentile, 50th percentile were obtained from two measurements, one of them with a unique ROI and the other with multiple ROIs encompassing the entire lesion. The ADC values were correlated to: presence of BCSCs (cell surface markers CD44+/CD24-, ABCG2 and ALDH1) identified by flow cytometric analysis, tumor grade, breast cancer staging, lymph nodal involvement, expression of estrogen receptors (ER), expression of progesterone receptors (PR) and expression of HER2. The assay mammospheres (Mammocult ®) were analyzed in 18 samples. Additionally, the ADC values were correlated to the pathologic complete response after QN treatment. There were no correlations between ADC values and breast cancer stem cells markers or mammospheres formation efficiency. For all parameters calculated, the ADC values (x10- 3 mm 2 /s) were lower in: breast cancer stage III and IV than stage II (0,90±0,16; 1,02±0,18), tumors with lymph node metastasis than without lymph node metastasis (0,89±0,16; 1,01±0,17), ER expression than ER negative (0,90±0,16; 1,00±0,18), PR expression than PR 10 negative (0,91±0,16; 0,98±0,18) and HER2 expression than HER2 negative (0,92±0,17; 0,97±0,18). The ADC values were significantly higher in grade-1 tumors (difference 0,18; CI: 0,03-0,33) compared to grade-2 tumors (p=0,02). The tumors values of ADC pretreatment were not correlated to the pathologic complete response after NC. The ADC values in pre-treatment invasive breast cancers are not a predictor of BCSC presence, mammospheres formation efficiency or pathologic complete response to QN. However it is correlated to the tumor grade, breast cancer staging, lymph nodal involvement, expression of ER, PR and HER2 and may represent a promising marker of tumor aggressiveness
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Untersuchung von Dünnschichtsystemen mittels Elektronenstrahl-Mikroanalyse / Characterization of Thin Layer Systems by Electron Probe Micro Analysis

Gorfu, Paulos 18 March 2009 (has links) (PDF)
Die Arbeit beschäftigt sich mit der Erweiterung der für dicke Proben schon mit Erfolg eingesetzten Werkstoffanalytischen Methode Elektronenstrahl-Mikroanalyse (ESMA) mittels Peak/Untergrund-Verhältnissen auf die Analyse von dünnen Schichten (unter 1 μm) zur qualitative und quantitativen Elementanalyse sowie zur Ermittlung von Schichtdicken. Weiterhin wird auf der Basis von einer ESMA-Methode für zwei dünne Schichten auf einem Substrat wird ein Modell zur Ermittlung des Phasenwachstumskoeffizienten für eine intermetallische Phase die sich bei der Diffusion zwischen einer dünnen Schicht und einem Substrat bildet, mittels ESMA-Messungen bei gleichzeitiger Erwärmung der Probe dargestellt. / The paper deals with the application of the materials analysis method EPMA by peak-to-background ratios, which is currently being used for the analysis of thick samples successfully, to thin layers (less than 1 μm) for the quantitative element analysis as well as for thickness prediction. In addition a model has been established on the Basis of an EPMA method for two films on a substrate for deriving the phase growth coefficient of an inter-metallic phase which grows during the diffusion between a thin layer and a substrate from EPMA measurements while simultaneously heating the sample.
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Molecular Sizing using Fluorescence Correlation Spectroscopy / Molecular Sizing using Fluorescence Correlation Spectroscopy

Loman, Anastasia 29 June 2010 (has links)
No description available.
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Diffusion dans un hydrogel : applications aux biocapteurs et optimisation de la technique de spectroscopie par corrélation de fluorescence (FCS)

Gendron, Pierre-Olivier January 2008 (has links)
Mémoire numérisé par la Division de la gestion de documents et des archives de l'Université de Montréal
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Electropolymerization and electrochromism of poly(4,7-dithien-2-yl-2,1,3-benzothiadiazole) and its copolymer with 3-methoxythiophene in ionic liquids

Tsegaye, Abebaw Adgo January 2013 (has links)
Philosophiae Doctor - PhD / This thesis is based on the study of electropolymerization and electrochromism of poly(4,7- dithien-2-yl-2,1,3-benzothiadiazole) (P(DTBT) and its copolymer with 3-methoxythiophene (MOT) in imidazolium ionic liquids (ILs) 1-butyl-3-methylimidazolium tetrafluoroborate (bmimbf4) hydrophilic, 1-butyl-3-methylimidazolium hexafluorophosphate (bmimpf6) and 1- butyl-3-methylimidazolium bis(trifluoromethylsulfonyl)imide (bmimtnf2) hydrophobic ILs. Traditional organic solvents acetonitrile and dichloromethane in the presence of 0.1 M tetrabutylammonium perchlorate (n-Bu4NClO4) as a supportive electrolyte was also used as a medium for comparison. Besides, a more hydrophobic ionic liquid, 1-octyl-3- methylimidazolium bis(trifluoromethylsulfonyl)imide (octmimtnf2) was also used for the electrodeposition of poly(3-methoxythiophene) (PMOT). The techniques employed are cyclic voltammetry (CV), electrochemical impedance spectroscopy (EIS), uv-visible spectroelectrochemistry and scanning electron microscopy (SEM). 4,7-Dithien-2-yl-2,1,3-benzothiadiazole (DTBT) a type of donor –acceptor monomer and 3- methoxythiophene (MOT) has been electropolymerized using ionic liquids as growth and supportive electrolytes.

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