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Analysis of Reciprocal Inhibition Between Candida albicans and Opportunistic Pathogens Enterobacter aerogenes and Enterobacter cloacaeHall, Amanda, Pribanich, Steven, Fox, Sean 07 May 2020 (has links)
The fungal pathogen Candida albicans and the opportunistic bacterial pathogens Enterobacter aerogenes and Enterobacter cloacae are common sources of human disease. The colonization of proximal anatomical locations by these pathogens suggests that interspecies polymicrobial interactions between Candida albicans and Enterobacter species occur. In order to understand mechanisms of diseases caused by these pathogens and to further the study of disease prevention, analyzation of their combined activities was conducted in this study. Changes in fungal morphology, cellular viability, and colony density were investigated using fungal and bacterial co-cultures. The effects of the Candida secreted quorum sensing molecule farnesol on Enterobacter aerogenes and Enterobacter cloacae was studied to observe changes in Enterobacter viability and colony density. The effects of the presence of Enterobacter species on Candida albicans was studied by observing changes in Candida morphology and colony density. The mutant strain of Candida albicans AlS6-/- was also cultured with Enterobacter to determine if the presence of the ALS6 surface glycoprotein gene affected Candida viability and colony density in the presence of Enterobacter species. Statistically significant decreases were observed in all studied metrics between experimental and control groups. This indicated that the interactions observed between Candida albicans and Enterobacter species represent reciprocal inhibitions of cellular functionalities. As Candida albicans is the primary cause of human fungal infections and Enterobacter species are common causes of opportunistic infections, the study of polymicrobial interactions between Candida and Enterobacter species as conducted in this study is important to furthering efforts of human disease inhibition.
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O farnesol inibe a proliferação celular e induz a apoptose em ratos wistar submetidos à hepatectomia parcial / Farnesol inhibits cell proliferation and induces apoptosis in liver after partiaI hepatectomy in Wistar ratsChagas, Carlos Eduardo Andrade 27 January 2006 (has links)
Diversos estudos epidemiológicos mostram que nutrientes e outros compostos bioativos presentes nos alimentos (CBA) apresentam atividade quimiopreventiva contra o câncer. Assim, destaca-se o estudo dos isoprenóides devido a sua ação promissora tanto na prevenção quanto na terapia do câncer. Todavia, apesar dessas evidências, pouco se sabe a respeito da ação dessas substâncias nos processos de proliferação celular e apoptose in vivo. Assim, 141 ratos Wistar foram tratados durante duas semanas consecutivas com farnesol (grupo FR, 25 mg/100 g de peso corporal) ou óleo de milho (grupo OM; controle, 0,25 mL/100 g de peso corporal) e sacrificados em diferentes momentos após a hepatectomia parcial (HP; 0 h, 30 min, 2 h, 4 h, 8 h, 12 h, 18 h e 24 h). Os parâmetros hepáticos analisados foram a proliferação celular (núcleos marcados para PCNA/mm2), apoptose (corpúsculos apoptóticos [CA\'s] por mm2) e expressão de p65, ciclina D1 (\"western blot\") e HMG-CoA redutase (\"dot-blot\"). Os animais tratados com o isoprenóide, assim como o grupo controle, apresentaram reduzida taxa de proliferação celular até 8h após a cirurgia. No entanto, a partir desse momento, o grupo FR passou a apresentar taxa de proliferação celular inferior ao grupo OM, diferença esta que atingiu significância estatística (p<0,05) 24h após a HP. Com relação a apoptose, animais tratados com FR apresentaram maior número de CA\'s (p<0,05) do que o grupo OM 30 min após a HP. Já em relação à ação do FR em âmbito molecular, houve uma redução de 40% e 50% na expressão de p65 e ciclina D1 30min e 24h após a HP, respectivamente, embora essas diferenças não tenham atingido significância estatística (p>0,05). Além disso, animais tratados com o isoprenóide apresentaram maior (p<0,05) expressão do gene que codifica para HMG-CoA redutase 2 h e 12 h após a cirurgia. Assim, tanto a inibição da proliferação celular quanto a indução de apoptose podem ser reflexo das alterações da expressão hepática dos genes para HMG-CoA redutase, p65 e ciclina D1 por parte do isoprenóide. / Epidemiological data have shown that nutrients and others bioactive compounds in food have chemopreventive activities against cancer. Among these compounds, isoprenoids are suggested either as a chemopreventive or chemotherapy agents. However, despite these evidences, studies focused on the isoprenoids activities on cell proliferation and apoptosis in vivo are rare. Thus, the effect of the 15-carbon isoprenoid farnesol on liver regeneration after partial hepatectomy was evaluated. Wistar rats were treated for two consecutive weeks with farnesol (FR group, 25 mg/100 g body weight) or corn oil (OM group, control, 0,25 mL/100 g body weight) and killed at different time points after partial hepatectomy (HP; 0 h, 30 min, 2 h, 4 h, 8 h, 12 h, 18 h and 24 h). Still, hepatic cell proliferation (PCNA lebeled nuclei), apoptosis (quantification of apoptotic bodies), p65 and cyclin D1 protein expression (western blot) and HMG-CoA reductase mRNA expression (dot blot) were also evaluated. Comparing to OM group, farnesol treatment significantly inhibited (p<0,05) hepatic cell proliferation 24 h after HP. Regarding apoptosis, also compared to controls, farnesol treated rats presented more (p<0,05) apoptotic bodies at 30 min. Besides, there were a suggestion of a higher number of apoptotic bodies 2 and 12 hours after HP in FR group comparing to OM group. According to western blot analysis, comparing to controls, this 15-carbon isoprenoid reduced 40% and 50% p65 and cyclin D1 hepatic protein expression, 30 min and 24 h after partial hepatectomy, respectively, although the differences did not also reach the statistical significance. Furthermore, farnesol treated rats had higher (p<0,05) HMG-CoA reductase mRNA levels than controls 2 h and 12 h after the surgery. Theses data suggest that the alterations on p65, cyclin D1 and HMG¬-CoA reductase gene expression observed in FR group might be associated with the inhibition of cell proliferation and the induction of apoptosis by farnesol.
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O farnesol inibe a proliferação celular e induz a apoptose em ratos wistar submetidos à hepatectomia parcial / Farnesol inhibits cell proliferation and induces apoptosis in liver after partiaI hepatectomy in Wistar ratsCarlos Eduardo Andrade Chagas 27 January 2006 (has links)
Diversos estudos epidemiológicos mostram que nutrientes e outros compostos bioativos presentes nos alimentos (CBA) apresentam atividade quimiopreventiva contra o câncer. Assim, destaca-se o estudo dos isoprenóides devido a sua ação promissora tanto na prevenção quanto na terapia do câncer. Todavia, apesar dessas evidências, pouco se sabe a respeito da ação dessas substâncias nos processos de proliferação celular e apoptose in vivo. Assim, 141 ratos Wistar foram tratados durante duas semanas consecutivas com farnesol (grupo FR, 25 mg/100 g de peso corporal) ou óleo de milho (grupo OM; controle, 0,25 mL/100 g de peso corporal) e sacrificados em diferentes momentos após a hepatectomia parcial (HP; 0 h, 30 min, 2 h, 4 h, 8 h, 12 h, 18 h e 24 h). Os parâmetros hepáticos analisados foram a proliferação celular (núcleos marcados para PCNA/mm2), apoptose (corpúsculos apoptóticos [CA\'s] por mm2) e expressão de p65, ciclina D1 (\"western blot\") e HMG-CoA redutase (\"dot-blot\"). Os animais tratados com o isoprenóide, assim como o grupo controle, apresentaram reduzida taxa de proliferação celular até 8h após a cirurgia. No entanto, a partir desse momento, o grupo FR passou a apresentar taxa de proliferação celular inferior ao grupo OM, diferença esta que atingiu significância estatística (p<0,05) 24h após a HP. Com relação a apoptose, animais tratados com FR apresentaram maior número de CA\'s (p<0,05) do que o grupo OM 30 min após a HP. Já em relação à ação do FR em âmbito molecular, houve uma redução de 40% e 50% na expressão de p65 e ciclina D1 30min e 24h após a HP, respectivamente, embora essas diferenças não tenham atingido significância estatística (p>0,05). Além disso, animais tratados com o isoprenóide apresentaram maior (p<0,05) expressão do gene que codifica para HMG-CoA redutase 2 h e 12 h após a cirurgia. Assim, tanto a inibição da proliferação celular quanto a indução de apoptose podem ser reflexo das alterações da expressão hepática dos genes para HMG-CoA redutase, p65 e ciclina D1 por parte do isoprenóide. / Epidemiological data have shown that nutrients and others bioactive compounds in food have chemopreventive activities against cancer. Among these compounds, isoprenoids are suggested either as a chemopreventive or chemotherapy agents. However, despite these evidences, studies focused on the isoprenoids activities on cell proliferation and apoptosis in vivo are rare. Thus, the effect of the 15-carbon isoprenoid farnesol on liver regeneration after partial hepatectomy was evaluated. Wistar rats were treated for two consecutive weeks with farnesol (FR group, 25 mg/100 g body weight) or corn oil (OM group, control, 0,25 mL/100 g body weight) and killed at different time points after partial hepatectomy (HP; 0 h, 30 min, 2 h, 4 h, 8 h, 12 h, 18 h and 24 h). Still, hepatic cell proliferation (PCNA lebeled nuclei), apoptosis (quantification of apoptotic bodies), p65 and cyclin D1 protein expression (western blot) and HMG-CoA reductase mRNA expression (dot blot) were also evaluated. Comparing to OM group, farnesol treatment significantly inhibited (p<0,05) hepatic cell proliferation 24 h after HP. Regarding apoptosis, also compared to controls, farnesol treated rats presented more (p<0,05) apoptotic bodies at 30 min. Besides, there were a suggestion of a higher number of apoptotic bodies 2 and 12 hours after HP in FR group comparing to OM group. According to western blot analysis, comparing to controls, this 15-carbon isoprenoid reduced 40% and 50% p65 and cyclin D1 hepatic protein expression, 30 min and 24 h after partial hepatectomy, respectively, although the differences did not also reach the statistical significance. Furthermore, farnesol treated rats had higher (p<0,05) HMG-CoA reductase mRNA levels than controls 2 h and 12 h after the surgery. Theses data suggest that the alterations on p65, cyclin D1 and HMG¬-CoA reductase gene expression observed in FR group might be associated with the inhibition of cell proliferation and the induction of apoptosis by farnesol.
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Caractérisation génétique, phénotypique et formation de biofilm des souches de Candida albicans répondant ou non au farnésolIrimes, Cristina 12 1900 (has links)
Candida albicans, le pathogène opportuniste le plus commun, peut subir des transitions morphologiques entre la forme levure et la forme hyphe, jouant un rôle dans la formation de biofilm. Le farnésol, un lipide endogène produit par C. albicans, est une molécule de quorum sensing qui inhibe cette transition morphologique. Certaines souches ne répondent pas au farnésol et nous avons vérifié les hypothèses que : 1) l’isolat clinique SC5314, la souche la mieux caractérisée, est un répondeur au farnésol; 2) la germination, la croissance et la formation de biofilm des non répondeurs diffèrent des répondeurs; 3) l’absence de la réponse au farnésol se manifeste en dehors de conditions de culture précises; 4) le farnésol agit via un récepteur nucléaire qui présente des altérations chez les non répondeurs; 5) la différence de la réponse au farnésol entre les souches s’explique par des variations au niveau transcriptionnel de certains gènes (CHK1, HST7, CPH1, GAP1, RAM2 et DPP3).
Les non répondeurs produisent un plus grand nombre d’hyphes, forment 60% plus de biofilm et croissent 50% moins vite que les répondeurs. La souche SC5314 se comporte comme un répondeur. L’absence de la réponse au farnésol se manifeste indépendamment des conditions de culture. Cependant, elle ne s’explique pas par une différence dans le niveau d’expression des gènes proposés, excepté pour DPP3 qui est surexprimé chez le non répondeur ATTC® 36802, suggérant ainsi une surproduction de farnésol chez cette souche. De plus, si le farnésol agit via un récepteur nucléaire, il sera d’un type non décrit précédemment. / Candida albicans, the most common fungal pathogen, can undergo morphological transitions between yeast and hyphal forms, which are associated with biofilm formation. Farnesol, an endogenous lipid produced by C. albicans, is a quorum sensing molecule that inhibits this transition. Previous work identified two clinical isolates that didn’t respond to farnesol in colony morphology and biofilm assays. Our goal is to better understand C. albicans response to farnesol using these natural farnesol non responders. We have hypothesized that : 1) clinical isolate SC5314, the most characterized strain, is a farnesol responder; 2) non responders’ germination, growth and biofilm formation are different from those of responders; 3) lack of response to farnesol occurs even outside specific culture conditions; 4) farnesol acts through a nuclear receptor that is altered in non responders; 5) difference in farnesol response between strains is explained by transcriptional variations of specific genes (CHK1, HST7, CPH1, GAP1, RAM2 and DPP3), that were previously shown to be potentially involved in farnesol’s mechanism of action.
Non responders produce more hyphae, form 60 % more biofilm and grow 50% slower than responders. The SC5314 strain acts like a responder. Lack of response to farnesol occurs regardless of culture conditions. However, the refractory response to farnesol is not explained by a difference in the proposed genes expression level, except for DPP3 that is upregulated in ATTC® 36802 non responder, suggesting an overproduction of farnesol by this strain. Furthermore, if farnesol acts trough a nuclear receptor, it will be a type not previously described.
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Caractérisation génétique, phénotypique et formation de biofilm des souches de Candida albicans répondant ou non au farnésolIrimes, Cristina 12 1900 (has links)
Candida albicans, le pathogène opportuniste le plus commun, peut subir des transitions morphologiques entre la forme levure et la forme hyphe, jouant un rôle dans la formation de biofilm. Le farnésol, un lipide endogène produit par C. albicans, est une molécule de quorum sensing qui inhibe cette transition morphologique. Certaines souches ne répondent pas au farnésol et nous avons vérifié les hypothèses que : 1) l’isolat clinique SC5314, la souche la mieux caractérisée, est un répondeur au farnésol; 2) la germination, la croissance et la formation de biofilm des non répondeurs diffèrent des répondeurs; 3) l’absence de la réponse au farnésol se manifeste en dehors de conditions de culture précises; 4) le farnésol agit via un récepteur nucléaire qui présente des altérations chez les non répondeurs; 5) la différence de la réponse au farnésol entre les souches s’explique par des variations au niveau transcriptionnel de certains gènes (CHK1, HST7, CPH1, GAP1, RAM2 et DPP3).
Les non répondeurs produisent un plus grand nombre d’hyphes, forment 60% plus de biofilm et croissent 50% moins vite que les répondeurs. La souche SC5314 se comporte comme un répondeur. L’absence de la réponse au farnésol se manifeste indépendamment des conditions de culture. Cependant, elle ne s’explique pas par une différence dans le niveau d’expression des gènes proposés, excepté pour DPP3 qui est surexprimé chez le non répondeur ATTC® 36802, suggérant ainsi une surproduction de farnésol chez cette souche. De plus, si le farnésol agit via un récepteur nucléaire, il sera d’un type non décrit précédemment. / Candida albicans, the most common fungal pathogen, can undergo morphological transitions between yeast and hyphal forms, which are associated with biofilm formation. Farnesol, an endogenous lipid produced by C. albicans, is a quorum sensing molecule that inhibits this transition. Previous work identified two clinical isolates that didn’t respond to farnesol in colony morphology and biofilm assays. Our goal is to better understand C. albicans response to farnesol using these natural farnesol non responders. We have hypothesized that : 1) clinical isolate SC5314, the most characterized strain, is a farnesol responder; 2) non responders’ germination, growth and biofilm formation are different from those of responders; 3) lack of response to farnesol occurs even outside specific culture conditions; 4) farnesol acts through a nuclear receptor that is altered in non responders; 5) difference in farnesol response between strains is explained by transcriptional variations of specific genes (CHK1, HST7, CPH1, GAP1, RAM2 and DPP3), that were previously shown to be potentially involved in farnesol’s mechanism of action.
Non responders produce more hyphae, form 60 % more biofilm and grow 50% slower than responders. The SC5314 strain acts like a responder. Lack of response to farnesol occurs regardless of culture conditions. However, the refractory response to farnesol is not explained by a difference in the proposed genes expression level, except for DPP3 that is upregulated in ATTC® 36802 non responder, suggesting an overproduction of farnesol by this strain. Furthermore, if farnesol acts trough a nuclear receptor, it will be a type not previously described.
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A Study of Surface Motility and Biofilm Formation in Pseudomonas aeruginosa: Quorum Sensing and Photodynamic Antimicrobial ChemotherapyCollins, Tracy Lynn January 2010 (has links)
No description available.
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Caractérisation moléculaire et phénotypique d’un mutant dpp3Δ défectif pour une pyrophosphate phosphatase chez la levure opportuniste Candida lusitaniae : étude de l’interaction des levures avec l’hôte / Molecular and phenotypic characterization of a dpp3Δ knocked-out mutant, lacking a pyrophosphate phosphatase, in the opportunistic yeast Candida lusitaniae : a study on the interaction of yeasts with the hostSabra, Ayman 12 November 2013 (has links)
Candida lusitaniae est une levure pathogène opportuniste émergente, responsable d’infections sévères chez les sujets immunodéprimés, et constitue un important modèle d’étude fonctionnelle de gènes par génétique inverse. Cette levure est souvent associée à des résistances aux antifongiques, d’où la nécessité de mieux comprendre l’interaction entre l’hôte et le pathogène, afin d’identifier de nouvelles cibles thérapeutiques potentielles. Les molécules signal sont décrites comme modulatrices de cette interaction. Au cours de ce travail, nous avons créé un mutant dpp3Δ, inactivé pour une pyrophosphate phosphatase, chez C. lusitaniae. La mutation a pour conséquence de modifier le taux secrété de PEA/tyrosol, des alcools aromatiques récemment décrits comme molécules signal chez les espèces Candida. Les levures du mutant dpp3Δ présentent aussi un défaut de pseudo-filamentation et de reproduction sexuée. Comparé à la souche sauvage, le mutant dpp3Δ module différemment la réponse macrophagique, notamment la production de NO et ROS, ainsi que la sécrétion de TNF-α et d’IL-10. Curieusement, la sécrétion d’IL-10 est modulée par les levures même sans contact physique avec les macrophages. Par ailleurs, nous avons observé des effets du traitement des levures par le PEA ou le tyrosol sur la modification des réponses immunes macrophagiques. Enfin, nous avons montré que le gène DPP3 chez C. lusitaniae était un facteur de virulence essentiel dans des modèles murins d’infection, et qu’il augmentait le taux de TNF-α secrété et la colonisation des cerveaux. / C. lusitaniae, an emerging Candida species often associated with antifungal resistance, is an important model to study gene function by reverse genetics. Understanding the host-pathogen interaction helps identifying new virulence factors and potentially new antifungal targets. Signaling molecules are often reported as modulators of this interaction. Here we created a dpp3Δ knocked-out mutant, lacking a pyrophosphate phosphatase, in C. lusitaniae. This mutation modified the ratio of secreted PEA/tyrosol, two newly reported signaling molecules in Candida species. Colony morphology of yeast cells was also altered as yeasts had a defect in pseudo-filamentation, and mating capacity was severely reduced. Compared to the wild-type strain, the dpp3Δ knocked-out mutant differently affected NO and ROS production by macrophages as well as TNF-α and IL-10 secretion. Interestingly IL-10 secretion was found to be modulated by C. lusitaniae without the need of a physical contact with the phagocytes. Moreover we elucidated the effects of PEA and tyrosol on yeast cells leading to modulations in macrophage immune responses. At last, the DPP3 gene was found to be an essential pathogenicity factor in mice models, leading to an increase of TNF-α secretion and brain colonization.
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Envolvimento dos canais para cálcio tipo-L na resposta cardiodepressora do farnesol em coração de rato / L-type calcium channels involvement in rat cardiodepressant response by farnesolSouza, Diego Santos de 04 March 2016 (has links)
Coordenação de Aperfeiçoamento de Pessoal de Nível Superior - CAPES / The farnesol (C15H26O) is a sesquiterpene alcohol found in herbs and essential oils. Research show some beneficial properties of farnesol as: antioxidant, anti-inflammatory and chemopreventive properties. However, the farnesol futher inhibition of activity of L-type calcium channels in smooth muscle. This study sought to analyze the involvement of calcium channels L-type in the cardiodepressant farnesol response in the rat heart. To this, contractile studies were conducted on left atria drawn to rest tension 5mN (0,5gf) and subjected to field stimulation with above-threshold current pulses of the 1 Hz, kept in isolated organ vessel, submerged in Krebs-Henseleit solution (8 mL) and aerated with carbogênica mixture (95% O2 and 5% CO2). The atrial contraction force was capture by an isometric transducer. Electrocardiographic recordings were performe on isolated heart, aortic perfusion under a constant flow (10 ml / min) Langendorff type system. The hearts were keep spontaneously beating, to determine the heart rate, and in heart stimulated were determined PR interval (PRI), QT (QTi) and complex QRS. Left ventricular pressure was determined in the heart stimulated electrically by means of a balloon inflated with water at a pressure of 15 cmHg. In rat left atrium, the farnesol response to the contraction strength showed a negative inotropic effect, reducing the contraction force at 41.63% at the maximum concentration used, with an EC50 of 2.84 ± 0.19 mM. To evaluate the effect of farnesol of the positive inotropic response of CaCl2 and (±)-Bay K8644 was observed that the farnesol shifted to the right CaCl2 concentration-response curve and decreased maximum efficiency (100% to 23%) and abolished curve of (±)-Bay K8644. TEA was use to evaluate the role of K+ channels in the negative inotropic response and the maximum effect by farnesol (41.63 to 63.02%) was increased. In isolated heart, there was an increase of PRI, QTi and QRS complex, and reduced left ventricular pressure (37, 38%) and heart rate (25.22%). Thus, farnesol exerts inotropic and negative chronotropic responses in the heart by reducing current to the L-type Ca2+. / O farnesol (C15H26O) é um álcool sesquiterpênico encontrado em óleos essenciais e ervas aromáticas. Pesquisas evidenciam algumas propriedades benéficas do farnesol como: propriedades antioxidantes, anti-inflamatórias e quimiopreventivas. Entretanto, o farnesol promoveu inibição dos canais de cálcio tipo-L em músculo liso. Neste trabalho procurou-se analisar os efeitos do farnesol sobre os mecanismos contráteis e eletrofisiológicos sobre o coração de rato. Para esse fim, os estudos contráteis foram realizados em átrios esquerdo estirados a para uma tensão de repouso de 5mN (0,5gf) e submetidos a estimulação de campo com pulsos de corrente supralimiares de 1 Hz, mantido em cuba para órgão isolado, submerso em solução de Krebs-Henseleit (8 mL) e aerado com mistura carbogênica (95 % O2 e 5 % CO2). A força de contração atrial foi captada por um transdutor isométrico. Os registros eletrocardiográficos foram obtidos em coração isolado, sob perfusão aórtica de fluxo constante (10 mL/min), em sistema de Langendorff. Os corações foram mantidos com batimento espontâneo, para determinar a frequência cardíaca, e em corações estimulados foram determinados os intervalos PR (PRi), QT (QTi) e complexo QRS. A pressão ventricular esquerda foi determinada, em coração estimulado eletricamente, por meio de um balonete insuflado com água até uma pressão de 15 cmHg. Em átrio esquerdo de rato, a resposta do farnesol sobre a força de contração apresentou efeito inotrópico negativo, diminuindo a força de contração em 41,63% na concentração máxima usada, apresentando uma CE50 de 2,843 ± 0,19 mM. Ao avaliar o efeito do farnesol sobre a resposta inotrópica positiva do CaCl2 e (±)-BAY K8644 foi observado que o farnesol deslocou para direita a curva concentração-resposta do CaCl2 e diminuiu a eficácia máxima (100% para 23%) e aboliu a curva do (±)-BAY K8644. Para avaliar a participação dos canais para potássio na resposta inotrópica negativa foi utilizado TEA tendo aumento da eficácia máxima do farnesol de 41,63 para 63,02%. Em coração isolado, foi observado aumento do PRi, QTi e complexo QRS, e redução da pressão ventricular esquerda (37,38%) e frequência cardíaca (25,22%). Assim sendo, o farnesol exerce respostas inotrópicas e cronotrópicas negativas no coração, por redução das correntes para Ca2+ tipo-L.
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The Effects of Farnesol, a Quorum Sensing Molecule from Candida albicans, on Alcaligenes faecalisHutson, Savannah 01 May 2020 (has links)
Quorum sensing molecules have become a recent focus of study to learn if and how they can be used, both on their own and in conjecture with current antimicrobial methods, as a means of bacterial control. One such quorum sensing molecule is the sesquiterpene alcohol, Farnesol, which is synthesized and released by the fungus, Candida albicans. In most in-vivo cases, our laboratory has shown that Alcaligenes faecalis overtakes C. albicans, preventing its growth. However, as a way to counteract this inhibitory effect, Farnesol may be one way that Candida has found to fight back. In this study, we focused on the inhibitory properties of Farnesol for growth and motility of A. faecalis, as well as, the molecule’s ability to prevent Alcaligenes from creating biofilms and/or degrading them once they have already been established. Our experiments show evidence that Farnesol is able to inhibit both the growth and motility of A. faecalis, and determination of the specific concentrations of Farnesol needed to see the largest effects on A. faecalis biofilms. Our hope is that in future studies, we will be able to add varying concentrations of the Farnesol to known and widely used antibiotics in order to increase the effectiveness of antibiotics against bacterial strains, both in the Alcaligenes genus and in other genus, that have previously been considered “antibiotic resistant”.
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Identification of transcriptional regulators functions in the human fungal pathogen Candida albicans using functional genomicsKhayat, Aline 01 1900 (has links)
Candida albicans, une levure pathogène de l’humain, cause des infections envahissantes chez les individus immunodéprimés. C. albicans peut changer sa morphologie entre les formes levures et filamenteuses, un déterminant de virulence considérable qui est influencé par plusieurs facteurs environnementaux comme le pH, le sérum, les nutriments, et le farnesol, une molécule de la détection du quorum. Le génome de C. albicans a été séquencé et à date, plusieurs gènes codant des régulateurs de transcription (RT) restent incaracterisés. Basé sur des criblages à grande-échelle, il a été possible d’attribuer des phénotypes à certains des RT incaractérisés, cependant, leurs cibles traduisant ces phénotypes restent inconnues. Le but de cette thèse était d’étudier les fonctions biologiques de RT sélectionnés et d’établir des réseaux transcriptionnels chez C. albicans. J’ai utilisé des approches génétiques et génomiques afin d’identifier et de caractériser le regulon de ces RT, ce qui a permis de déterminer leur fonctions biologiques. Notre groupe avait identifié Fcr1p, un RT dont la délétion augmente la filamentation et la tolérance à plusieurs antifongiques. Cependant, le mécanisme sous-jacent reste inconnu. Dans le Chapitre 2, j’ai identifié le régulon d’Fcr1p et j’ai trouvé qu’il régule ses cibles de façon complexe étant en même temps un activateur et un répresseur d’expression de gènes. J’ai démontré que Fcr1p agit comme répresseur direct des gènes de l’assimilation et du métabolisme de l’azote. L’expression de plusieurs de ces cibles était dépendante d’Fcr1p en conditions d’épuisement d’azote. J’ai montrés que Fcr1p agit aussi comme répresseur indirect de gènes hyphe-spécifiques ainsi qu’un activateur indirect de transport et de métabolisme du carbone et de gènes levure-spécifiques. De plus, la suréxpression d’Fcr1p abolit la filamentation sur le milieu Spider, confirmant que c’est un répresseur de filamentation. Dans le Chapitre 3, j’ai décris un crible génétique basé sur un principe de co-culture pour identifier des mutants de RT défectueux en production de farnesol. Conséquemment, les RT Ada2p, Cas5p, Fgr15p, Cas1p, et Rlm1p, impliqués dans le maintien de la paroi cellulaire, ont été identifiés. La quantification du farnesol intracellulaire de ces mutants a confirmé que le défaut observé peut être attribué à un défaut de la biosynthèse de farnesol plutôt qu’à un défaut de sécrétion de celui-ci. Pour comprendre le mécanisme responsable de ce défaut, nous avons commencé par caractériser le régulon de Cas5p par des analyses de profilages d’expression et de localisation. J’ai montré que Cas5p se lie à des gènes impliqués dans le catabolisme des hydrocarbures et la production d’énergie. Cas5p induit aussi des gènes impliqués dans le catabolisme des hydrocarbures et des lipides et réprime des gènes impliqués dans le métabolisme primaire, montrant que Cas5p régule plusieurs voies métaboliques, notamment celle du carbone. En plus des fonctions d’Ada2p et Rlm1p dans la liaison et/ou la régulation de gènes du catabolisme des hydrocarbures, nos résultats appuient avec la proposition que le farnesol constitue une traduction du métabolisme du carbone cellulaire. Dans l’ensemble, ces résultats ont aidé à élucider le rôle d’Fcr1p ainsi que 5 autres RT dans la régulation de voies métaboliques fondamentales influençant le dimorphisme, un attribut crucial de la virulence chez C. albicans. / Candida albicans, an important human fungal pathogen, causes life-threatening invasive infections in immuno-compromised individuals. It switches between yeast and filamentous forms. This dimorphism is a considerable virulence attribute and one that is influenced by many environmental factors, such as pH, serum, nutrients and farnesol, a quorum sensing molecule. The genome of C. albicans has been sequenced and to date, many of the genes encoding transcriptional regulators (TRs) remain uncharacterized. Based on large-scale screens, it was possible to assign phenotypes to some of the uncharacterized TRs, however the targets of these TRs that mediate these phenotypes remain to be identified. The aim of this thesis work was to understand the normal biological function of selected TRs and construct transcriptional networks in C. albicans. I used genetic and genomic approaches to identify and characterize the regulon of these TRs, which helped to define their biological functions. Our group has previously identified Fcr1p, a zinc cluster TR whose deletion increases cell tolerance to multiple drugs and enhances filamentation. However, the mechanism by which it mediates these phenotypes is still unknown. In Chapter 2, I identified the regulon of Fcr1p and found that it regulates its targets in a complex manner since it can act both as an activator and as a repressor of gene expression. I have shown that Fcr1p acts as a direct negative regulator of genes involved in nitrogen source assimilation and metabolism. The Fcr1p-dependent expression of a number of its targets also occurs under nitrogen starvation conditions. Results also showed that Fcr1p is an indirect negative regulator of hyphal-specific genes, and an indirect positive regulator of carbon source transport and metabolism, as well as yeast-specific genes. Furthermore, Fcr1p overexpression abrogates filamentation on Spider medium confirming that it is a negative regulator of filamentation. In Chapter 3, I describe a genetic screen based on a co-culture assay with A. nidulans to identify TR mutants defective in farnesol production. Our results identified Ada2p, Cas5p, Fgr15p, Cas1p, and Rlm1p, five TRs involved in cell wall integrity. Intracellular farnesol quantification in these mutants confirmed that the observed defect in farnesol production could be attributed to impairment in farnesol biosynthesis rather than export of this molecule. To get an insight into the molecular mechanism responsible for this defect, we started by identifying the regulon of Cas5p using expression and location profiling. Results showed that Cas5p binds genes involved in carbohydrate catabolism and energy production. Cas5p also upregulates genes involved in carbohydrate and lipid catabolism and downregulates genes involved in primary metabolism, indicating that Cas5p is involved in the regulation of many pathways, with a clear involvement in carbon metabolism. Coupled to the known function of Ada2p and Rlm1p in binding and/or regulating genes involved in carbohydrate catabolism, our results support the proposition that farnesol is a metabolic read-out of the cell carbon metabolic activity. Taken together, these results helped elucidate the role of Fcr1p as well as five other TRs in the regulation of central metabolic pathways that influence morphological switching, a crucial attribute of C.albicans virulence.
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