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Structural And Functional Studies Of Neisserial Lactoferrin Binding ProteinsRavi Yadav (11850101) 17 December 2021 (has links)
<p>Two species of <i>Neisseria</i>, <i>N. meningitidis</i> and <i>N.
gonorrhoeae</i>, are obligate human pathogens that cause meningitis and
gonorrhea, respectively. Although generally asymptomatic, <i>N. meningitidis</i>
can cause invasive meningococcal disease with high mortality rate. Due to
emerging antibiotic resistance strains of <i>N. gonorrhoeae</i>, the Centers
for Disease Control and Prevention (CDC) have designated it as an urgent threat
to public health. Therefore, immediate interventions are required for fight
against these Neisserial pathogens. Iron is an essential nutrient for all
bacteria, including <i>Neisseria</i>. However, free iron is scarce in human,
therefore, <i>Neisseria</i> have evolved to acquire iron from host proteins.
These iron acquisition systems are immunogenic and important for infection and
are promising therapeutic targets.</p>
<p> In the
host, lactoferrin sequesters free iron and limits iron availability to
pathogens. However, <i>Neisseria</i> have evolved machinery to hijack iron directly
from lactoferrin itself. Lactoferrin
binding proteins, LbpA and LbpB, are outer membrane proteins that together
orchestrate the acquisition of iron from lactoferrin. Additionally, LbpB serves
an additional role in providing protection against host cationic antimicrobial
peptides and innate immune response. Despite studies aimed at deciphering the
roles of LbpA and LbpB, the molecular mechanisms underpinning iron acquisition
and immune protection remain unknown. Here, we investigated the role of the lactoferrin
binding proteins in iron acquisition and protection against cationic
antimicrobial peptides. We obtained three-dimensional structures of <i>Neisseria</i>
LbpA and LbpB in complex with lactoferrin using cryo-electron microscopy and
X-ray crystallography. These structures show that both LbpA and LbpB bind to
C-lobe of lactoferrin, albeit at distinct sites. Structural analyses show that
while lactoferrin maintains its iron-bound closed conformation in the
LbpB-lactoferrin complex, it undergoes a large conformational change from an
iron-bound closed to an iron-free open conformation upon binding to LbpA. This
observation suggest that LbpA alone can trigger the extraction of iron from
lactoferrin. Our studies also provide an explanation for LbpB’s preference
towards holo-lactoferrin over apo-lactoferrin and LbpA’s inability to
distinguish between holo- and apo-lactoferrin. Furthermore, using mutagenesis
and binding studies, we show that anionic loops in the C-lobe of LbpB
contribute to binding the cationic antimicrobial peptide lactoferricin.
Solution scattering studies of the LbpB-lactoferricin complex showed that LbpB
undergoes a small conformational change upon peptide binding.</p>
Together,
our studies provide structural insights into the role of the lactoferrin
binding proteins in iron acquisition and evasion of the host immune defenses.
Moreover, this work lays the foundation for structure-based design of
therapeutics against <i>Neisseria</i> targeting the lactoferrin binding
proteins.
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Caractérisation des fonctions immunomodulatrices de la Cardiotrophin-Like CytokineSarah, Pasquin 03 1900 (has links)
No description available.
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Identifizierung des zellulären Rezeptors für das binäre Toxin von Clostridium spiroformeWilczek, Claudia 26 August 2014 (has links)
Erst kürzlich wurde der Lipolyse-stimulierte Lipoproteinrezeptor (LSR, engl.
lipolysis-stimulated lipoprotein receptor) als der zelluläre Oberflächenrezeptor
von CDT und Iota-Toxin, zweier Vertreter der Iota-Toxin-Familie der
clostridialen Aktin-ADP-ribosylierenden Toxine, identifiziert. In dieser Arbeit
sollte geprüft werden, ob CST, ein weiterer Vertreter der Iota-Toxin-Familie,
ebenfalls LSR für den Zelleintritt nutzt.
Zunächst wurden die Toxinkomponenten CSTa und CSTb erstmals
rekombinant hergestellt. Dazu wurden die für CSTa und CSTb codierenden
Genabschnitte mittels PCR amplifiziert und anschließend in einen
Expressionsvektor kloniert. Als Expressionsvektor wurde in dieser Arbeit der
pHis1522-Vektor verwendet. Zur Amplifizierung wurden die Plasmide in E. coli transformiert und anschließend aufgereinigt. Die Proteinexpression erfolgte in B. megaterium, weil dieses Bakterium sich bereits zur Expression anderer clostridialer Toxine bewährt hatte. Zur Aufreinigung der 6xHis-getaggten Proteine wurde die Nickel-Affinitätschromatographie eingesetzt.
Als nächstes wurde gezeigt, dass die rekombinant hergestellten
Toxinkomponenten CSTa und CSTb biologisch aktiv waren. Dazu wurden
CaCo2-Zellen mit CST behandelt und anschließend die Morphologie der Zellen untersucht. CaCo2-Zellen, die mit CSTa und CSTb behandelt wurden, wiesen Vergiftungserscheinungen wie eine typische Zellabrundung auf. Mit dem „Aktin-Nach-ADP-Ribosylierungs-Assay“ und der fluoreszenzmikroskopischen Untersuchung von TRITC-Phalloidin-gefärbtem Aktin wurde gezeigt, dass das rekombinant hergestellte CST Aktin-ADP-ribosylierende Eigenschaften besaß.
Nachdem gezeigt war, dass rekombinant hergestelltes CST sich wie ein
biologisch aktives, binäres Aktin-ADP-ribosylierendes Toxin verhält, konnte
mithilfe der Vergiftung von H1-HeLa(+LSR)-Zellen und nativen H1-HeLa-Zellen, die kein LSR exprimierten, nachgewiesen werden, dass die Wirkung des Toxins LSR-abhängig ist. FACS-Analysen und Kolokalisationsstudien mit Alexa488-gefärbtem CSTb und Antikörper-gefärbtem LSR erbrachten zusätzlich den Beweis, dass CSTb auf der Zelloberfläche an LSR bindet und bei der Aufnahme in die Zellen mit LSR in endozytischen Vesikeln kolokalisiert. Die Ergebnisse dieser Arbeit zeigen, dass das C. spiroforme Toxin (CST) ebenfalls LSR als Rezeptor für den Zelleintritt verwendet.
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Velikost jednotlivých lipoproteinových částic u různých patologických stavů / The size of individual lipoproteins in various pathological conditionsDušejovská, Magdaléna January 2017 (has links)
Metabolic syndrome (MS) and end-stage renal disease (ESRD) represent two clinical- pathologic states with increased risk of atherosclerotic cardiovascular complications with considerable impact on the quality of life of the patients. The knowledge about the changes in distribution of individual lipoprotein subfractions could countribute to the estimation of risk of atherosclerosis development. The studies presented in this thesis aimed at analyses of subfractions of LDL and HDL in the abovementioned pathologic states; moreover, we tried to elucidate the associations of changes in lipoprotein subfractions with clinical as well as biochemical alterations. The Study I was a placebo controlled study observing the effect of polyunsaturated fatty acids of n-3 family (PUFA n-3) administration to patients with MS who were divided to statin-treated ones (36 patients), and those without statin therapy (24 probands). The Study II comprised of 57 patients with ESRD on high volume haemodiafiltration (HV-HDF). In this Study, the parameters after 5-year follow-up were compared with baseline characteristics. Also, we included comparisons with the control group of 50 age and sex matched patients without the signs of ESRD. In Study I, we observed lowering of triacylglycerol and cholesterol content in VLDL...
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The Roles of Moron Genes in the Escherichia Coli Enterobacteria Phage Phi-80Ivanov, Yury V. 23 October 2012 (has links)
No description available.
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Lipoprotein-associated phospholipase A2 (Lp-PLA2) in acute coronary syndromeJabor, Bashar 12 1900 (has links)
La phospholipase A2 liée aux lipoprotéines (Lp-PLA2) est une biomarqueur de plusieurs maladies inflammatoires et une niveau sérique élevé est associé à l’instabilité de la plaque artérioscléreuse. Comme son nom l’indique, la Lp-PLA2 est liée aux lipoprotéines plasmatiques (LDL et HDL) et son rôle est de prévenir l’accumulation de phospholipides oxidés a la surface des lipoprotéines. Toutefois, les produits de dégradation des phospholipides oxidés par la Lp-PLA2 - le lysophosphatidyl choline par les acides gras oxidés peuvent aussi promouvoir l’inflammation.
Mieux comprendre le métabolisme de la Lp-PLA2 pourrait nous permettre de mieux apprécier son rôle dans la formation d’une plaque artérioscléreuse instable, car des études antérieures ont démontré une forte expression de la Lp-PLA2 dans la plaque. De plus, il existe une forte corrélation entre les niveaux et l’activité plasmatiques de la Lp-PLA2 et la maladie coronarienne, les accidents cérébraux-vasculaires et la mortalité cardiaque. L’inhibition de la Lp-PLA2 avec une petite molécule, le darapladib, n’a pas démontré de bénéfice sur les évènements cardiovasculaires dans deux études cliniques.
Cette thèse présentera d’abord une revue de la littérature sur la Lp-PLA2 et les maladies cardiovasculaires et les deuxième et troisième chapitres, une étude clinique réalisée sur des patients avec un syndrome coronarien aigu. / Lipoprotein associated phospholipase A2 (Lp-PLA2) is a biomarker of several inflammatory diseases and syndromes. An elevated Lp-PLA2 level is associated with unstable atherosclerotic plaques. Bound to plasma lipoproteins (LDL and HDL), Lp-PLA2 prevents the formation of biologically active oxidized phospholipids on their surface such as oxidized phosphatidylcholine (oxPC). Nevertheless, the products of Lp-PLA2 action, lysophosphatidylcholine (LPC) and non-esterified fatty acids (NEFA) are both known to aggravate inflammation.
Thus, understanding the metabolism of Lp-PLA2 could help us better understand its role in plaque formation, as studies have shown high expression of Lp-PLA2 and LPCs in unstable plaques. Moreover, studies showed correlation between increased Lp-PLA2 mass and activity and increased risk of coronary artery disease, stroke, and death. The inhibition of Lp-PLA2 with a small molecule, Darapladib, has not demonstrated benefit in reduction of cardiovascular events in two clinical studies.
Here, the first chapter will focus on Lp-PLA2 and cardiovascular disease in man, highlighting the latest updates in the literature. The second and third chapters will introduce experimental work on Lp-PLA2 in the setting of acute coronary syndrome.
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Surface-Engineered Magnetic Nanoparticles for Sample Preparation and Analysis of Proteins and PeptidesPirani, Parisa 15 May 2015 (has links)
Sample preparation as an essential step in mass spectrometry-based analysis, plays a critical role in proteomics studies. Magnetic nanoparticles (MNPs) have been widely used in protein and peptide sample preparation due to their magnetic properties, biocompatibility, easy synthesis and surface functionalization. MNPs loaded with analyte or analyte modification reagent can be easily separated from the reaction medium by an externally applied magnetic field. The small size of MNPs provides high analyte loading and extraction capacity. Additionally, MNP can be decorated with different functional groups to achieve selective modification or extraction of analyte. In this study we have utilized silica coated iron oxide magnetic nanoparticles (Fe3O4@SiO2 MNPs) for protein and peptide sample preparation.
Fluorescence-based methods were utilized for quantitative and qualitative characterization of N-hydrosucccinimidyl (NHS) ester groups on the surface of Fe3O4@SiO2 MNPs. Fluorophore Dansylcadaverine was conjugated to NHS ester functional groups. Fluorometric measurement of cleaved dansylcadaveine was employed to determine the number of NHS ester groups per MNPs that was found to be 2.6 × 102 and 3.4 × 103for 20 nm and 100 nm Fe3O4@SiO2 MNPrespectively. The efficiency of labeling native bovine serum albumin (BSA) by NHS ester coated Fe3O4@SiO2 MNPs was also explored in terms of maximizing the number of MNPs conjugated per BSA molecule or maximizing the number of BSA molecules conjugated per each MNP.
Lysine residues of apolipoprotein B-100 (apoB-100) on the surface of intact human low density lipoprotein (LDL) were labeled by NHS ester modified Fe3O4@SiO2 MNPs in aqueous solvents at room temperature. The MNP labeledapoB-100 was treated by SDS to remove lipids and then digested using trypsin. Tryptic peptides were eluted from MNPs by cleaving disulfide linkage between labeled peptides and MNPs. LC-MS/MS analysis found 28 peptides containing labeled lysine residues. These lysine residues should be on the solvent exposed surface of LDL since the large size of MNPs prevents contact of the labeling reagent to those lysines embedded inside the structure of LDL.
TCEP- immobilized Fe3O4@SiO2MNPs were fabricated and utilized for reduction of disulfide bonds in bovine pancreas insulin and two different cyclic peptides. Disulfide bonds were efficiently cleaved at room temperature in both organic and aqueous solvents confirmed by LC-MS/MS analysis of reduced/alkylated protein and peptides. Disulfide reduction and alkylation reactions was performed in one step and the reducing agent was simply separated from peptide and protein solution by magnetic separation.
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Régulation de l'expression hépatique de récepteur LSR (lipolys stimulated lipoprotein receptor) : rôles de l'acide docosahexaénoïque et du récepteur PPARa ( peroxisome proliferator-activated receptor alpha) / Regulation of the expression of hepatic lipolysis stimulated lipoprotein receptor : roles of docosahexaenoic acid and peroxisome proliferator-activated receptor alphaAkbar, Samina 11 December 2013 (has links)
Le récepteur LSR est un acteur important du métabolisme hépatique, puisqu'il joue un rôle dans la clairance des lipoprotéines à ApoB/ApoE riches en triglycérides durant la période postprandiale. Dans cette étude, nous avons montré qu'un traitement in vitro par DHA peut augmenter les niveaux de protéine et d'activité LSR dans les cellules d'hépatome de souris Hepa 1-6. En toute cohérence, un régime supplémenté en DHA a conduit à élever les niveaux de protéine LSR hépatique chez la souris. Mais aucune de ces deux études n'a montré de changement au niveau des ARNm. Ceci suggère que l'enrichissement en DHA influe positivement sur le microenvironnement de LSR et son ancrage à la surface de la cellule. Nous avons ensuite étudié le rôle du récepteur PPAR[alpha] dans la régulation du gène lsr. Une analyse in silico nous a permis d'identifier des éléments PPRE dans la région 5' régulatrice du gène humain et de ses homologues de souris et de rat. Des traitements pharmacologiques par des agoniste et antagoniste spécifiques de PPAR[alpha] ont montré que ce récepteur est impliqué dans la régulation transcriptionnelle de l'expression du LSR dans les cellules Hepa 1 6. Enfin, une analyse transcriptomique a révélé une diminution de l'expression de PPAR[alpha] et d'autres gènes impliqués dans le métabolisme lipidique hépatique chez la souris LSR+/- sous régime standard ou riche en graisses. En conclusion, toutes ces études indiquent que l'activité LSR hépatique est sous le contrôle de facteurs nutritionnels capables d'activer divers mécanismes de régulation, faisant du LSR une cible d'intérêt potentiel pour des stratégies nutritionnelles ou thérapeutiques destinées à prévenir ou traiter les dyslipidémies / Lipolysis stimulated lipoprotein receptor (LSR) plays an important role in the clearance of ApoB/ApoE containing triglyceride-rich lipoproteins during postprandial phase. In this study, we demonstrated that in vitro treatment of mouse hepatoma cells, Hepa 1-6, with docosahexaenoic acid (DHA) led to an increase in LSR protein levels as well as its activity. Furthermore, the mice placed on the diet supplemented with DHA showed an increase in hepatic LSR protein. However, the mRNA levels remained unchanged in both in vitro and in vivo studies, suggesting that DHA enrichment may result in changes in LSR microenvironment that could affect its anchorage at the surface of cell membrane. Specific peroxisome proliferator response elements were identified in the upstream region of human, mouse and rat lsr gene by in silico analysis. We therefore sought to determine the role of the transcription factor, peroxisome proliferator-activated receptor (PPAR[alpha]), in LSR regulation. In vitro pharmacological studies using PPAR[alpha]-selective agonist and antagonist agents demonstrated that PPAR[alpha] is indeed involved in the transcriptional regulation of LSR expression. Furthermore, qPCR array analysis revealed the downregulation of PPAR[alpha] and various genes involved in hepatic lipid metabolism in LSR+/- mice on standard and high-fat diets. In conclusion, these studies show that the hepatic LSR activity is controlled by dietary factors that can activate various pathways involved in regulating lipid homeostasis, therefore representing LSR as a potential target for either nutritional or therapeutic strategies towards the prevention or treatment of dyslipidemia
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Étude sur l’entreposage de la matière grasse chez des femmes obèses post-ménopausées présentant un taux élevé ou normal d’apolipoprotéine B.Salem, Huda 07 1900 (has links)
CONTEXTE: L'inefficacité de captation des acides gras libres (AGL) par le tissu adipeux blanc (TAB) est connue pour favoriser la résistance à l'insuline (RI) dans les tissus périphériques, mais
dans le foie, elle favorise également la production accrue de lipoprotéines contenant
l'apolipoprotéine B100 (lipoprotéines apoB). Nous avons récemment démontré que les femmes
post-ménopausées obèses avec un nombre élevé de lipoprotéines apoB à jeun (apoB plasmatique >
1,2 g/L) avaient plus de RI que les femmes avec un taux d’apoB normal. Notre objectif était donc
d'examiner si l'inefficacité de captation des AGL pourrait être un mécanisme expliquant la RI, in
vivo dans cette population. HYPOTHÈSES: Les femmes ménopausées en surpoids/obèses avec un
taux d’apoB élevé ont moins d'efficacité à capter les AGL par le TAB que les femmes avec un taux
d’apoB faible. MÉTHODES/RÉSULTATS: L'efficacité de captation des AGL a été examinée
dans 22 femmes non diabétiques en surpoids/obèses. La population a été séparée selon la médiane
d’apoB (0.9 g/L) en 2 groupes; les femmes ayant un taux d’apoB inférieur vs supérieur à la médiane
(N=11/groupe). L'efficacité de captation des AGL par le TAB a été indirectement évaluée en
suivant le sort d'un repas riche en gras (0.0162g 13C-trioléine/g de matières grasses, 66% de gras,
47g gras/m2 surface corporelle) marqué au 13C-trioléine, sur 6h en circulation ([13C]TG et [13C]AGL
plasmatiques) et en oxydation (13CO2 dans l’air expiré [AE]). L’enrichissement en 13C des
échantillons d’AE et du plasma a été mesuré par spectrométrie de masse pour ratio isotopique. Les
femmes ayant un apoB élevé avaient une clairance plasmatique totale postprandiale des TG (p
<0,05) réduite sans diminuer de la clairance plasmatique totale des AGL, par rapport aux femmes
ayant un faible taux d’apoB. Cependant, en examinant le sort du 13C-trioléine, les femmes ayant un
apoB élevé avait une réduction de la clairance des [13C]TG plasmatiques (44,78 μM vs 7,81 μM; p
<0,05) et des [13C]AGL plasmatiques (2,64 uM vs 0,06 uM; p <0,05) à 6h, sans aucune différence
en % récupéré de 13C-trioléine dans le CO2 de l’AE. Ces données suggèrent que les femmes ayant
un taux d’apoB élevé ont une réduction postprandiale de la clairance et de la captation de 13Ctrioléine
par le TAB. CONCLUSION: La captation inefficace des AGL par le TAB des femmes
post-ménopausées en surpoids et obèses avec un surplus d’apoB peut être un mécanisme sousjacent
à la RI chez ces sujets. / BACKGROUND: Inefficiency of fatty acid (FA) trapping in white adipose tissue (WAT) is known to promote insulin resistance (IR) in peripheral tissue, but in the liver, it also promotes increased secretion of apolipoprotein B100-lipoproteins (apoB-lipoproteins). We recently demonstrated that
post-menopausal obese women with high numbers of fasting apoB-lipoproteins (plasma apoB> 1.2 g/L) had higher IR than women with normal apoB. Our aim was thus to examine whether inefficiency of FA trapping was a mechanism explaining IR in vivo in this population.
HYPOTHESES: Postmenopausal overweight and obese women with high apoB have lower
efficiency of FA trapping in WAT than women with low apoB. METHODS/RESULTS: The
efficiency of FA trapping was examined in 22 non-diabetic overweight and obese women, and the
group was separated around median apoB (0.9 g/L) into women with higher vs lower apoB (N=11
per group). The efficiency of FA trapping in WAT was indirectly assessed by following the fate of a
13C-triolein labelled high-fat meal (0.0162g 13C-triolein/g of fat, 66% fat, 47 g fat/m2 body surface
area) over 6 hours in circulation (plasma [13C]TG and [13C]FA) and oxidation (breath 13CO2). 13Cenrichment
of breath and plasma samples was measured by isotope ratio mass spectrometry.
Women with higher apoB had delayed total postprandial plasma TG clearance (p<0.05) but not total
plasma free FA clearance compared to women with lower apoB. However, examining the fate of
13C-triolein revealed that women with higher apoB had delayed plasma [13C]-TG clearance (44.78
μM vs 7.81 μM; p<0.05) and plasma [13C]-FA clearance (2.64 μM vs 0.06 μM; p<0.05) at 6 hours,
without any differences in % recovered 13C-triolein in breath CO2. This data suggests that women
with higher apoB have lower postprandial 13C-triolein clearance and trapping in WAT.
CONCLUSION: Ineffective FA trapping in WAT in post-menopausal overweight and obese
women with higher apoB may be a mechanism underlying IR in these subjects.
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Receptor mediated catabolism of plasminogen activatorsGrimsley, Philip George, Medical Sciences, Faculty of Medicine, UNSW January 2009 (has links)
Humans have two plasminogen activators (PAs), tissue-type plasminogen activator (tPA) and urokinase-type plasminogen activator (uPA), which generate plasmin to breakdown fibrin and other barriers to cell migration. Both PAs are used as pharmaceuticals but their efficacies are limited by their rapid clearance from the circulation, predominantly by parenchymal cells of the liver. At the commencement of the work presented here, the hepatic receptors responsible for mediating the catabolism of the PAs were little understood. tPA degradation by hepatic cell lines was known to depend on the formation of binary complexes with the major PA inhibitor, plasminogen activator inhibitor type-1 (PAI-1). Initial studies presented here established that uPA was catabolised in a fashion similar to tPA by the hepatoma cell line, HepG2. Other laboratories around this time found that the major receptor mediating the binding and endocytosis of the PAs is Low Density Lipoprotein Receptor-related Protein (LRP1). LRP1 is a giant 600 kDa protein that binds a range of structurally and functionally diverse ligands including, activated α2 macroglobulin, apolipoproteins, β amyloid precursor protein, and a number of serpin-enzymes complexes, including PA??PAI-1 complexes. Further studies for the work presented here centred on this receptor. By using radiolabelled binding assays, ligand blots, and Western blots on cultured cells, the major findings are that: (1) basal LRP1 expression on HepG2 is low compared to a clone termed, HepG2a16, but appears to increase in long term culture; (2) a soluble form of LRP1, which retains ligand-binding capacity, is present in human circulation; (3) soluble LRP1 is also present in cerebral spinal fluid where its role in neurological disorders such as Alzheimer??s disease is a developing area of interest; and (4) the release of LRP1 is a mechanism conserved in evolution, possibly as distantly as molluscs. The discovery, identification, and characterisation of soluble LRP1 introduces this protein in the human circulation, and presents a possible further level of regulation for its associated receptor system.
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