Les infections bactériennes touchant la circulation sanguine conduisent à un vaste éventail de graves pathologies, comme les chocs septiques ou les infections locales (endocardites et méningites). Neisseria meningitidis colonise avec succès l’endothélium vasculaire et cause des sepsis sévères. Ces infections résultent de la colonisation des cellules endothéliales de l’hôte, étape clef de la pathophysiologie à laquelle les travaux présentés dans ce manuscrit se sont intéressés. La colonisation de l’endothélium par N. meningitidis est un processus complexe qui implique l’adhésion et la multiplication des bactéries à la surface des cellules endothéliales dans le contexte particulier de la circulation sanguine, où des forces mécaniques sont générées par le flux sanguin sur les objets circulants. Bien que de nombreuses études se soient intéressées à l’interaction entre les cellules endothéliales et N. meningitidis, plusieurs aspects demeurent incertains comme par exemple l’impact des contraintes générées par le flux sanguin et la participation relative des deux partenaires de l’interaction dans la colonisation de l’endothélium par N. meningitidis.L’adhésion de la bactérie à la surface des cellules endothéliales est dépendante de facteurs bactériens (les pili de type IV, PT4) et induit une réponse de la part de la cellule hôte, qui se traduit par un remodelage de la membrane plasmique et une réorganisation du cytosquelette d’actine sous les microcolonies. Dans un premier temps, ces travaux de thèse montrent que la réponse cellulaire induite par N. meningitidis participe activement à la colonisation. En effet, la formation de projections membranaires permet à chaque bactérie de la microcolonie d’établir des contacts avec la cellule hôte, nécessaires à la résistance des microcolonies face aux forces mécaniques générées par le flux sanguin. De plus, nous montrons que la protéine PilV, composant des PT4, est impliquée dans le remaniement de la membrane plasmique et la réorganisation du cytosquelette. Nous avons développé une méthode combinant vidéo-microscopie et analyse de fluorescence pour décrypter les événements précoces prenant place lors du contact entre les bactéries et la surface des cellules hôtes. Nous avons alors montré que le remodelage de la membrane induit par N. meningitidis ne dépend pas de la réorganisation du cytosquelette d’actine au site d’infection mais plutôt des propriétés intrinsèques de la bicouche lipidique.Dans un second temps, nous nous sommes intéressés aux étapes tardives de l’infection, c'est-à-dire à l’initiation d’un nouveau cycle de colonisation. Bien que solidement ancrées à la surface des cellules par l’intermédiaire des projections membranaires, quelques bactéries se détachent des microcolonies pour coloniser des nouveaux sites au sein de l’hôte. Nous avons démontré l’importance de modifications post-traductionnelles de la piline majeure dans cette étape de l’infection et caractérisé les mécanismes impliqués.Cette étude a permis d’affiner les mécanismes impliqués dans l’induction de la réponse cellulaire induite par N. meningitidis et son impact sur la colonisation efficace de l’endothélium par ce pathogène. / Bacterial infections targeting the bloodstream lead to a wide array of severe clinical manifestations, such as septic shock or focal infections (endocarditis and meningitis). Neisseria meningitidis colonizes successfully the vascular wall and causes severe sepsis. Such infections result from an efficient colonization of host endothelial cells, a key step in meningococcal diseases which has been the subject of the work presented here. Endothelium colonization by N. meningitidis is a complex process implying bacterial adhesion and multiplication on the endothelial cell surface in the specific context of the bloodstream, where mechanical forces generated by the blood flow are applied on circulating bacteria. Even though many studies focused on the interaction between N. meningitidis and the endothelial cell, many aspects remain elusive, such as the impact of shear stress generated drag forces and the relative contribution of the two partners involved in this interaction.Adhesion to the endothelial cell surface is dependent on bacterial factors called type IV pili (Tfp) and leads to induction of a host cell response, characterized by a local remodeling of the plasma membrane and reorganization of actin cytoskeleton underneath bacterial microcolonies. First, we have shown that the cellular response induced by N. meningitidis actively participate in the colonization process. Indeed, membrane deformation allows contact with every bacterium inside the microcolony, which is necessary for microcolony resistance to mechanical forces. Additionally, we have demonstrated that the PilV protein, a Tfp component, is involved in plasma membrane remodeling and actin cytoskeleton reorganization. We designed a method combining high resolution live-cell fluorescence video-microscopy and fluorescence quantification to decipher the early events induced on contact of bacterial aggregates with the host cell surface. Using this technique we have shown that membrane remodeling does not rely on actin cytoskeleton reorganization but rather on intrinsic properties of the lipid bilayer. Second, we focused on latter steps of the infection process when initiation of a new colonization cycle is initiated. While firmly attached to the host cell surface through the membranous projections, some bacteria can detach from the microcolony to disseminate throughout the host. We have demonstrated the importance of post-translational modification of the major piline in this step and characterized the underlying mechanisms.This work allows refinement of the molecular mechanisms involved in the induction of the cellular response induced by N. meningitidis and its impact on successful endothelium colonization by this pathogen.

Les pili de type IV (PT4), certainement les organelles les plus répandues des bactéries à Gram-négatif, sont des machineries à multiples fonctions qui jouent un rôle crucial dans la pathogenèse de nombreux pathogènes humains, notamment notre modèle Neisseria meningitidis. L’assemblage des PT4 nécessite une machinerie complexe incluant au moins vingt protéines localisées dans la membrane interne, le périplasme et la membrane externe. Certaines de ces protéines ne sont pas nécessaires pour la biosynthèse des PT4, mais supportent les fonctions qui leur sont associées. Ces protéines, appelées pilines mineures, sont au nombre de trois. Par l’analyse phénotypique des mutants dans les gènes codant pour les pilines mineures, le rôle de chacune a pu être déterminée. Ainsi la piline mineure ComP est nécessaire pour la compétence pour la transformation d’ADN, PilV est requise pour la déformation de la membrane plasmique de la cellule hôte et PilX est essentielle pour l’adhésion des bactéries sur les cellules épithéliales et endothéliales, la formation d’agrégats bactériens et la déformation de la membrane plasmique de la cellule hôte. De nombreuses similarités avec la piline majoritaire laissent penser que les pilines mineures s’insèrent dans la fibre des PT4 pour exercer leurs fonctions, bien que ceci n’a jamais été démontré. Si on connait bien les fonctions des pilines mineures, leur mode d’action n’est toujours pas compris. L’objectif global de ce travail de thèse a été de comprendre comment une fibre protéique peut assurer une diversité de fonctions aussi importante. Pour y parvenir, l’étude du mode d’action des pilines mineures a été entreprise. Contrairement à ce qui prévalait dans le modèle dominant, les pilines mineures PilV et PilX exercent leur fonction à partir de l’espace périplasmique pour moduler la quantité de pili exprimés en surface. En effet, les mutants pilV et pilX présentent respectivement des défauts de piliation de l’ordre de 39% et de 63% par rapport à la souche sauvage. Ces défauts expliquent cependant les phénotypes des mutants. En effet, l’ensemble des fonctions dépendantes des PT4 nécessite une forte quantité de PT4, soit au moins 40% pour l’agrégation et l’adhésion et 70% pour le déclenchement de la réponse cellulaire. Ces résultats révèlent que les pilines mineures sont impliquées dans la biogenèse des PT4 plutôt que dans le support biochimique direct de leurs propriétés. Le défaut de piliation de ces mutants est restauré par l’absence de rétraction, indiquant que les pilines mineures PilV et PilX jouent un rôle dans la stabilité des PT4. Nous avons également montré que la piline mineure ComP est nécessaire pour la piliation et qu’elle présente une fonction redondante avec la piline mineure PilV. Afin de comprendre comment les pilines mineures PilV et PilX exercent leur rôle sur la quantité de pili exprimés en surface, nous avons réalisé une étude structure/fonction de ces deux protéines. Nous avons observé une absence de piliation, en bloquant les pilines PilV et PilX dans la membrane interne, indiquant une interaction directe avec la machinerie des PT4 probablement via la piline majeure PilE. Nous avons également montré qu’il existe une interaction entre les pilines mineures et PilE au niveau de la membrane interne et en amont de l’assemblage des pili. Ces résultats, obtenus par une technique de pontage disulfure, ont cependant besoin d’être confirmés par des contrôles supplémentaires. Par une stratégie de mutagenèse, nous avons enfin mis en évidence que la région D de PilV et les boucles α/β et β2/β3 de PilX sont nécessaires à leur fonctionnement. Ces travaux ont permis de montrer que la quantité de pili exprimés par la bactérie est un facteur déterminant pour définir les propriétés des PT4. Les pilines mineures agissent au niveau du périplasme pour promouvoir la biosynthèse des pili, ce qui met en avant le rôle direct de la piline majeure PilE dans les fonctions associées aux PT4. / Type IV Pili (TFP) are widespread filamentous organelles extending from the surface of many Gram-negative bacteria that mediate multiple functions and play a key role in the pathogenesis of several important human pathogens, including our model, Neisseria meningitidis. The assembly of TFP requires a complex machinery composed by at least twenty proteins that are localized in the inner membrane, the outer membrane and the periplasm. Three of these proteins, called minor pilins, are not required for the biosynthesis of the TFP, but support their functions. Based on the phenotypes associated with the mutants, their role on TFP functions has been determined. The minor pilin Comp is required for natural competence for DNA transformation, PilV is required for the deformation of the host cell plasma membrane and PilX is essential for the adhesion of bacteria to epithelial and endothelial cells, the bacterial aggregation and the deformation of the host cell plasma membrane. Many similarities with the major pilin PilE suggests that minor pilin are inserted into the fiber of TFP to exert their functions, although it has never been demonstrated. How these proteins carry out their functions mechanistically is not elucidated. The general objective of this thesis was to understand how a single fiber can provide such a variety of functions. To achieve this, the study of the mode of action of minor pilins was undertaken. Contrarily to what has been previously proposed, the PilV and PilX minor pilins seem to exert their functions from the periplasmic space to modulate the amount of surface exposed pili. Indeed, pilV and pilX strains show piliation defects of 39 % and 63 % respectively compared to the wild type. Besides, we have shown that TFP functions require a large amount of TFP, at least 40 % for the aggregation and adhesion and 70% to induce the reorganization of the plasma membrane. Thus these modest decreases in the amount of pili explain the phenotypes of these mutants. These results indicate that the minor pilins are involved in the biogenesis of TFP rather than in the direct support of their biochemical properties. Moreover, the piliation defect of these mutants is restored in the absence of retraction, indicating that the PilV and PilX minor pilins play a role in the stability of TFP. To understand how PilV and PilX minor pilins modulate surface exposed pili level, we performed a structure/ function analysis of these two proteins. Blocking the PilV and PilX minor pilins in the inner membrane abolishes piliation, indicating a direct interaction with the machinery of TFP, probably via the major pilin PilE. We have also shown that an interaction between the minor pilins and the major pilin occurs in the inner membrane and upstream of the pilus assembly. However, these results, obtained by biochemical techniques, need to be confirmed by additional controls. By a mutagenesis strategy, we finally demonstrated that the D region of PilV and the α/β and β2/β3 loops of PilX are necessary for their functions. This study has shown that a relatively modest decrease in the amount of pili displayed on the bacterial surface leads to a strong effect on the functions carried by TFP. Minor pilins act in the periplasm to promote the biosynthesis of pili, which highlights the direct role of the major pilin in the TFP-dependent functions.

Cette thèse issue d'une collaboration entre l'Université Lyon 1 et Sanofi Pasteur (SP) porte sur l'étude du procédé de dépolymérisation et d'activation d'un polyoside capsulaire. Cette réaction est la première étape du couplage d'un vaccin (Menactra®) antiméningococcique conjugué (polyoside du méningocoque de groupe C conjugué à l'anatoxine diphtérique). L'objectif de ce travail, réalisé dans le cadre d'un programme d'amélioration de la conformité et de la robustesse des procédés de SP, est la compréhension du mécanisme et l'optimisation des paramètres clés de cette réaction. Le procédé de couplage de ce vaccin tel qu'il est décrit par SP comporte 3 étapes clés : la dépolymérisation/activation du polyoside par le peroxyde d'hydrogène, la dérivatisation par un "linker" et le greffage à la protéine. Si les 2 dernières étapes sont des réactions chimiques bien connues, la première qui permet, à la fois de réduire la masse molaire du polyoside et de générer des groupements réducteurs, est plus obscure. Une stratégie a été élaborée afin de comprendre cette réaction. Dans un premier temps, l'étude poussée du procédé a permis d'identifier les paramètres impactant la cinétique de dépolymérisation et l'activité réductrice. Ensuite, l'analyse structurale, par diverses techniques, du polyoside dépolymérisé a confirmé l'activation. Enfin, la caractérisation de modifications chimiques de macromolécules étant relativement complexe, de plus petits modèles (monomère, tétramère) ont été utilisés et ont permis d'établir un mécanisme réactionnel de la dépolymérisation du polyoside. A partir de ces résultats, plusieurs solutions ont été proposées à l'industriel pour améliorer le rendement et/ou la robustesse du procédé / This PhD work, initiated by Sanofi Pasteur in collaboration with the University of Lyon 1, concerns the study of the Menactra® vaccine, a glycoconjugate vaccine produced by covalently coupling Neisseria meningitidis serogroups A, C, W135, Y capsular polysaccharides to diphtheria toxoid. The objective was to better understand the chemistry involved in the conjugation process of the vaccine, in order to improve the process robustness and the overall conjugated yields with particular emphasis on the serogroup C. The conjugation process can be divided into 3 key steps: depolymerization/activation by hydrogen peroxide, derivatization, and conjugation. While the 2 last steps of the process are well known in bioconjugation chemistry, the exact mechanism of the first step, which serves 2 purposes, first to reduce the polysaccharide molecular weight and second, to generate the reducing groups on the polysaccharide chain, is poorly understood. An overall strategy for the characterization of the serogroup C polysaccharide depolymerization process was successfully applied to understand this reaction. We first provided a process description of this step, identified and optimized the key process parameters. Then, the structural comparison of the polysaccharide before and after the depolymerization obtained with specified analytical methods gave important information on the mechanism. Finally, well defined sialic and tetrasialic acids were reacted with H2O2 to complete the elucidation of this complex mechanism. From these results, several solutions were proposed to the industrial to improve the yield and the robustness

Neisseria meningitidis é um diplococo Gramnegativo, aeróbio e encapsulado, causador mais comum de meningite e septicemia. Este agente é o principal causador de infecções bacterianas invasivas no mundo. Apesar de existirem 13 sorogrupos de N. meningitidis, apenas 6 são capazes de causar infecção: A, B, C, W135, X e Y. O sorogrupo B difere dos outros sorogrupos patogênicos por sua cápsula polissacáride ter composição idêntica ao ácido policiálico, presente em muitas glicoproteínas humanas, particularmente encontrados no tecido cerebral fetal, e bioquimicamente homóloga com a estrutura molecular de adesão do neurônio. Sendo assim, a cápsula polissacáride não pode ser usada em vacinas conjugadas, pois pode causar autoimunidade, sendo pouco imunogênica. Doenças meningocócicas causadas pelos sorogrupos A, C, Y e W135 podem ser prevenidas pelas vacinas que contêm polissacarídeos capsulares específicos conjugados. Para que uma vacina seja eficaz contra o sorogrupo B, é importante que esta abranja todos os sorotipos e seja capaz de promover imunidade duradoura, principalmente em crianças abaixo de dois anos, as mais acometidas. Vacinas baseadas em vesículas de membrana externa (OMVs, do inglês Outer Membrane Vesicles) de N. meningitidis B são amplamente estudadas. No presente estudo, OMVs de meningococo B (B:4:P1.9) foram associadas a um lipídio catiônico, o dioctadecildimetilamônio (DDA-BF) em preparação antigênica testada em camundongos fêmeas não isogênicos, e comparamos os títulos de anticorpos IgG, IgG1, IgG2a e IgG2b com os anticorpos produzidos por camundongos imunizados com a mesma OMVS associada ao hidróxido de alumínio, por ELISA. As análises foram realizadas com soros de cada animal colhidos individualmente, após 60 dias de imunização. A avidez dos anticorpos também foi analisada por ELISA. Immunoblot e Dot-ELISA avaliaram a reação específica entre a cepa homóloga usada na imunização e a reação a antígenos cruzados com outras cepas de meningococo. A hipersensibilidade tardia (HTT) foi comparada entre os dois grupos experimentais, após o desafio com cepa homóloga em uma das patas, depois de 24 horas da injeção, após 14 dias da primeira dose de imunização. / Neisseria meningitidis is an encapsulated Gram-negative aerobic diplococcus, the most commom meningitidis and sepsis agent , and the major bacterial invasive disease agent worldwide. Infections are caused by only 6 of 13 pathogenic serogroups: A,B,C, W135 and Y. Meningococcal serogroup B differs from the other pathogenic serogroups because it has a capsular polysaccharide identical to the polysialic acid present in many human glycoproteins, in particular, it is similar to carbohydrates found in fetal brain tissue. This is the reason that it does not allow the use of polysaccharide protein in conjugate vaccine, and for its low immunogenic. An effective meningococcal B vaccine development should cover all serotypes and be able to promote long term immunity, mainly in children under 2 years, the most affected age. Meningococcal outer membrane vesicles (OMVs) vaccines are widely studied. In this present study, meningococcal serogroup B OMVs (B:4:P1.9) was associated with a cationic lipid, dioctadecyldimetylammonium (DDA-BF) in an antigenic preparation tested in female outbred mice. Individual serum was collected, and antibodies titles IgG, IgG1, IgG2a were compared with animals immunized with OMVs and aluminium hydroxide, analyzed by ELISA. Analyses were carried out 60 days after first immunization. Antibodies avidity index were also analyzed by ELISA. Immunoblot and Dot-ELISA were carried out to evaluate specific reaction for homologous stranis and cross-reactive antigens present in other meningococcal strains. Delayed type hypersensitivity (DTH) was compared between two experimental groups, 24 hours before injection of homologous strain challenge.

As proteínas de classe 3 são candidatas na preparação de uma vacina contra a doença meningocócica. O objetivo deste estudo é determinar a imunogenicidade da proteína de classe 3 purificada da cepa de Neisseria meningitidis do sorogrupo B juntamente com a capacidade adjuvante de whole cells de Bordetella pertussis. Foram imunizados camundongos BALB/c neonatos em um intervalo de 3 a 12 dias entre 1 e 4 doses da proteína de classe 3 mais adjuvante, pela via intranasal e no 21º dia pela via intramuscular com a proteína de classe 3 emulsificada com hidróxido de alumínio. Os resultados demonstraram que após 2 doses pela via intranasal e 1 dose pela via intramuscular houve rápido estímulo das células imunes nos camundongos adultos BALB/c e neonatos BALB/c e outbred. Todos os soros foram analisados por ELISA e immunoblot. O adjuvante B. pertussis administrado pelas vias intranasal ou intramuscular, aumentou a resposta imune comparada com os controles. Anticorpos bactericidas e de alta afinidade foram produzidos. / Proteins of class 3 sound candidates in the preparation of vaccine against meningococcal illness. The aim of this study was to determine the immunogenicity of class 3 proteins purified of Neisseria meningitidis of the serogroup B along with whole cells of Bordetella pertussis as adjuvant. BALB/c and outbred neonate mice between 3 and 12 days old were immunized with 1 to 4 doses of the purified class 3 proteins with or without adjuvant given by the intranasal route, and on the 21st day the animals received an intramuscular dose of the class 3 proteins with or without aluminum hydroxide. The results demonstrated that after 2 doses by the intranasal route and 1 dose intramuscular there was a rapid stimulation of the immune cells in BALB/c adult mice as well as BALB/c and outbred neonates mice. All sera were analyzed by ELISA and immunoblot. The adjuvant B. pertussis used in the present investigation and given via the intranasal or intramuscular route increased the immune response compared with the controls. High affinity and bactericidal antibodies were produced.

Neisseria lactamica, uma bactéria comensal não patogênica, predominantemente humana e usualmente encontrada no trato respiratório superior de crianças, está intimamente relacionada a Neisseria meningitidis patogênica. A colonização com N. lactamica pode ser responsável pelo envolvimento da imunidade natural contra a infecção pelos meningococos em crianças pequenas, quando as taxas de portadores de meningococos são baixas. Estas características levam a sugerir que os componentes de N. lactamica possam ser um elemento-chave para a produção de uma nova vacina para N. meningitidis. Devido ao pouco conhecimento sobre a dinâmica dos portadores e sobre a diversidade da população de N. lactamica em crianças, tem sido difícil escolher um isolado representativo para preparar um adequado produto imunogênico. Em nosso estudo, foi proposto um protocolo para estudar a imunogenicidade de whole cells de N. lactamica, N. meningitidis, N. sicca ou N. meningitidis c (isoladas de portadores), através da imunização intranasal em coelhos, considerando a via de entrada natural do patógeno. Isolados da orofaringe de N. lactamica, N. meningitidis, N. sicca ou N. meningitidis c, foram inoculados em coelhos adultos pela via intranasal, numa concentração de densidade ótica 1.0 a 650nm, num volume de 1000 ?L. Os coelhos foram imunizados por quatro vezes em intervalos de sete dias. Também foram usadas cepas como N. subflava, N. elongata, N. sicca, N. perflava, N. mucosa isoladas do líquido cérebro-espinhal ou sangue de pacientes. Os coelhos desenvolveram níveis de anticorpos IgG específicos no soro, como foi determinado por ELISA usando whole cells de cepas homólogas e heterólogas. O soro dos coelhos imunizados com N. lactamica, N. meningitidis, N.sicca ou N. meningitidis c, apresentaram anticorpos IgG que reagiram com antígenos numa faixa de 5 a 130 kDa por meio de immunoblot. Os anticorpos presentes nos soros dos coelhos imunizados com N. lactamica não induziram altos títulos de anticorpos com atividade bactericida contra as cepas de N. meningitidis, no entanto, esta atividade pode ser observada com anticorpos produzidos pelos coelhos imunizados intranasalmente com N. meningitidis. Anticorpos IgG de alta avidez foram produzidos, embora não tenha sido determinada uma significativa correlação entre atividade bactericida e a indução de anticorpos IgG de alta avidez, principalmente nos coelhos imunizados com N. lactamica. A imunização RESUMO intranasal usando whole cells de N. lactamica foi adequada para sensibilizar eficientemente o sistema imune de mucosa no modelo coelho. / Neisseria lactamica, a commensal bacterium non-pathogenic to human beings and usually found in the upper respiratory tract of children, is closely related to pathogenic Neisseria meningitides. Colonization with N. lactamica can be responsible for evolving natural immunity to meningococcal infection in childhood, when rates of meningococcus carriers are low. These features lead to suggest that N. lactamica components can be key-elements in the production of a new vaccine for N. meningitides. As little is known about dynamic carriers and N. lactamica population diversity in children, it has been difficult choosing a representative for preparing an adequate immunogenic product. A protocol was proposed to study immunogenicity of whole cells of N. lactamica, N. meningitidis, N. sicca or N. meningitides c (carrier-isolated) by i.n. immunization in rabbits considering the natural pathogen entry route. Oropharinx-isolated N. lactamica, N. meningitidis, N. sicca, or N. meningitides c were i.n. inoculated into adult rabbits, in a concentration of optical density 1.0 at 650nm in a volume of 1000 ?L. The rabbits were immunized four times at seven-day intervals. N. subflava, N. elongata, N. sicca, N. perflava, N. mucosa strains isolated from CSF and blood from patients were also used. The rabbits developed levels of specific lgG antibodies in serum, as determined by ELISA using whole cells of homologous and heterologous strains. Serum from rabbits immunized with N. lactamica, N. meningitidis, and N. sicca or N. meningitides c, presented lgG antibodies reactive to 5 to 130 kDa antigens on immunoblot. Antibodies in serum from rabbits immunized with N. lactamica failed to induce high concentration of antibodies with bactericidal activity against N. meningitidis; however, this activity could be observed with antibodies produced by rabbits i.n. immunized with N. meningitidis. High avidity lgG antibodies were produced, although a significant correlation between bactericidal activity and induction of lgG antibodies of high avidity could not be determined, mainly in rabbits immunized with N. lactamica. Intranasal immunization of N.lactamica whole cells was suitable to efficiently sensitize mucosal immune system in rabbit model.

Neisseria meningitidis är en bakterie som kan leda till invasiv sjukdom eller endast orsaka bärarskap i nasopharynx. Bakterien delas in i olika serogrupper och klonala komplex. Vissa av dessa grupper och klonala komplex förekommer endast hos invasiva isolat och andra bland bärare, vilket tyder på att det finns genetiska skillnader mellan invasiva och bärarisolat. I denna studie undersöktes genen pilE som kodar för PilE proteinet och ingår i bakteriens pili. Proteinet finns i två klasser, klass 1 och klass 2. Metoden som användes för att studera eventuella skillnader i förekomst och uttryck av pilE genen var digital droplet PCR (ddPCR). Både DNA och RNA kvantifierades med ddPCR för att undersöka antalet kopior av pilE genen (DNA) samt dess uttryck (RNA) mellan invasiva isolat och bärarisolat, mellan klass 1 pilE isolat och klass 2 samt fördelning av klasserna i isolattyperna. Principen för ddPCR är att dela ett prov till tiotusentals nanodroppar där individuella droppar genomgår PCR för en senare avläsning av flourescens från prober. Resultatet visade skillnad mellan bärarisolat och invasiva isolat där de invasiva isolaten visade mindre uttryck av pilE än bärarisolat. Klass 2 isolat hade signifikant färre genuttryck än klass 1 isolat och invasiva isolat visade klass 2 i högre utsträckning än bärarisolat. / Neisseria meningitidis is a bacterium that can cause invasive disease or carriage in the nasopharynx. The bacteria are divided into different serogroups and clonal complexes. Specific serogroups and clonal complexes are more frequent or are only found among invasive isolates or in carriage isolates. This study has investigated pilE, a gene that encodes the PilE protein located in the bacteria´s pilin and the protein is found in either class 1 or class 2. digital droplet PCR was used to investigate differences in presence and expression of the gene pilE. Both DNA and RNA was quantified to study the difference in copy number of the pilE gene (DNA) and its expression (RNA) between invasive isolates and carriage isolates but also between class 1 isolates and class 2 isolates. The distribution of classes between the isolate types was also investigated. The ddPCR method divides a sample into thousands of nanodroplets and a PCR reaction occurs in each droplet followed by droplet reading where fluoroscens from probes is measured. The difference that could be seen was that the invasive isolates expressed pilE in lower copies. Class 2 isolates had a significantly lower gene expression than class 1 isolates and invasive isolates expressed class 2 in a higher frequency.

Neisseria meningitidis is an obligate human pathogen causing over 1000 cases of meningococcal disease within the U.K., 10 % of which result in long-term disability or fatality. 10-70 % of the population carry N. meningitidis in their nasopharynx, the natural reservoir of this bacterium, as a commensal. The host-pathogen interactions of this species are complex and a greater understanding of the molecular mechanisms involved in pathogenesis and immune evasion is required. Three aspects of N. meningitidis pathogenesis were explored in this study. One mechanism of immune evasion which promotes serum resistance of N. meningitidis is recuitment of complement factor H through domains 6 and 7 (fH₆₇) by factor H binding protein (fHbp). In this study, mouse fH₆₇ was recombinantly expressed and purified. fHbp did not bind mouse fH₆₇ at physiologically relevant protein concentrations. The structure of mouse fH₆₇ was solved, showing differences in domain orientation and surface chemistry compared to the human version of this protein, potentially accounting for the host specificity of this interaction. Type IV pili (T4P) are crucial adhesins of N. meningitidis, the fibre of which is composed of thousands of copies of PilE. A method was developed to recombinantly produce large quantities of this protein from a variety of meningococcal strains and the structure was solved of one PilE protein. Subsequent analysis was performed with the PilE proteins investigating their interaction with the putative pilus receptor CD46 and human epithelia as well as their immunogenicity. A method was also established to produce PilC, the proposed tip-assocoated adhesin of T4P. ZapE has recently been identified as an important protein in pathogen colonisation, functioning as an ATPase linked to Z-ring formation in bacterial cell fission. Both N. meningitidis and E. coli ZapE were recombinantly produced. The domain boundaries were mapped and ATPase activity was confirmed. No interaction was seen with FtsZ but DNA binding and modulation was observed by shift assays, the exact function of which remains to be elucidated in future studies.

The primary approach to the control of meningococcal disease remains effective vaccination programmes in susceptible populations. Vaccines against serogroups A, C, W and Y offer broad protection against meningococci and both polysaccharide and conjugate quadrivalent vaccines are licensed for use in the UK. Previous studies have assessed the antibody response to meningococcal polysaccharide and conjugate vaccines, but there is limited information on the nature of the B cell response to these antigens. As part of a clinical trial using both polysaccharide (MenACWY-PS) and conjugate (MenACWY-CRM) vaccines in adult volunteers, this DPhil reports the analysis of subsets of antigen specific B-cells produced in response to either vaccine. Prior MenACWY-PS impaired the response to a subsequent dose of MenACWY-CRM. This may be due to MenACWY-PS driving terminal differentiation of antigen specific cells into plasma cells, without replenishment of the memory B cell pool. In addition, despite prior data indicating that it may act as a thymus dependent antigen, the serogroup A polysaccharide component of MenACWY-PS appears to behave in the same way as serogroup C, W & Y polysaccharide components. Antibody molecules recognise and bind to a multitude of conformational epitopes. This variability is enabled by the complexities of immunoglobulin variable domain gene recombination which can generate a vast potential repertoire of unique antibody molecules. However, the diversity of the antibody repertoire is more restricted against specific antigens and within defined B cell subsets. In this DPhil, ‘next generation’ sequencing technologies were used to investigate the diversity of the B cell variable domain before and after vaccination of adult volunteers. Individuals at baseline were found to have distinct antibody repertoires. Vaccination with a Haemophilus influenzae type b (Hib) conjugate vaccine resulted in an oligoclonal antibody response, with enrichment for Hib specific canonical antibody sequences.

La protéine périplasmique PilB est décrite jouer un rôle in vivo dans la résistance des bactéries pathogènes du genre Neisseria au peroxyde d’hydrogène généré par les macrophages de l’hôte. PilB est composée de trois domaines : un domaine N-terminal (N-ter) à activité disulfure oxydoréductase, un domaine central à activité méthionine sulfoxyde réductase (Msr) de classe A, et un domaine C-terminal à activité Msr de classe B. Les MsrA et MsrB catalysent la réduction des méthionine sulfoxydes (MetSO) incluses dans des protéines, en méthionines (Met). Les deux classes A et B de Msr sont structuralement distinctes et réduisent respectivement l’isomère S et R de la fonction sulfoxyde du substrat. Elles présentent un mécanisme catalytique similaire à trois étapes impliquant la formation d’un intermédiaire acide sulfénique, suivie de celle d’un pont disulfure intramoléculaire, qui est ensuite réduit par la thiorédoxine (Trx) dans le cas des Msr cytoplasmiques et par le domaine N-ter dans le cas des domaines Msr de PilB. Le domaine N-ter présente un repliement de type DsbE. Les DsbE sont des disulfure oxydoréductases périplasmiques impliquées dans la maturation des cytochromes c. Les études réalisées au cours de ma thèse ont permis de caractériser les résidus du site actif de la MsrA de N. meningitidis impliqués dans la reconnaissance du substrat sulfoxyde et la catalyse de l’étape réductase. L’étude des disulfure oxydoréductases périplasmiques de N. meningitidis a également été entreprise afin de caractériser in vitro la DsbE de N. meningitidis et de pouvoir identifier les facteurs structuraux et moléculaires impliqués dans la reconnaissance de leurs cibles et/ou partenaires. / The periplasmic protein PilB is described to be involved in vivo in the resistance of pathogens from Neisseria genus to hydrogen peroxide generated by the host macrophages. PilB is composed of three domains : the N-ter domain (N-ter) that display a disulfure oxidoreductase activity, the central and the C-terminal that display methionine sulfoxide reductase A and B activities. MsrA and MsrB catalyse the reduction of protein bound methionine sulfoxide (MetSO) back to methionine (Met). These two classes of Msr A and B are structurally unrelated and are specific for the reduction of the S and R isomer of the sulfoxide function respectively. They share a similar catalytic mechanism consisting of three steps that involve the formation of a sulfenic acid intermediate followed by the formation of an intramolecular disulfide bond that is then reduced by thioredoxin for cytoplasmic Msrs and by the N-ter domain for the Msrs domain of the PilB protein. The N-ter domain display a DsbE fold. These proteins are periplasmic disulfure oxidoreductases involved in the cytochrome c maturation pathway. The results obtained during my PhD have lead to the characterisation of residues of the actove site of Neisseria meningitidis involved in the recognition of the sulfoxide substrate and in the catalysis of the reductase step. The study of periplasmic disulfure oxidoreductases from N. meningitidis was undertaken in order to characterise in vitro the DsbE from N. meningitidis. The structural and molecular factors involved in the recognition of their targets and/or partners could then be determined.