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  • About
  • The Global ETD Search service is a free service for researchers to find electronic theses and dissertations. This service is provided by the Networked Digital Library of Theses and Dissertations.
    Our metadata is collected from universities around the world. If you manage a university/consortium/country archive and want to be added, details can be found on the NDLTD website.
441

Антибактеријска активност млека магарице балканске расе / Antibakterijska aktivnost mleka magarice balkanske rase / Antibacterial activity of Domestic Balkan donkey's milk

Šarić LJubiša 27 October 2015 (has links)
<p>Млеко магарице је тек последњих година доспело у фокус научних истраживања, иако су његова благотоворна терапеутска и козметичка својства позната још од античких времена. Упркос томе што знање о функционалности млека магарице константно расте, његов антимикробни потенцијал остаје најмање истражен. Литературни подаци о микробиологији и евентуалној антимикробној активности млека магарице балканске расе која егзистира на подручју Србије и околних балканских земаља су јако лимитирани. Ово млеко се традиционално конзумира без претходне топлотне обраде, што покреће низ питања која се односе на здравствену безбедност конзумирања млека у сировом стању. Предмети истраживања ове докторске дисертације били су утврђивање микробиолошког квалитета сировог млека магарице балканске расе, као и испитивање његове антибактеријске активности према одабраним сојевима Escherichia coli, Salmonella Enteritidis, Salmonella Typhimurium, Staphylococcus aureus, Listeria monocytogenes и Klebsiella pneumoniae. У циљу утврђивања главних носилаца антибактеријског дејства, као и самог модела антибактеријског деловања, у одабраним узорцима овог млека намењеним извођењу антибактеријских испитивања, извршено је одређивање садржаја антимикробних протеина - лизозима и лактоферина, као и садржаја калцијума. У узорцима млека магарице предвиђеним за испитивање антибактеријске активности према S. aureus и L. monocytogenes, одређен је садржај масних киселина са документованом антибактеријском активношћу према Грам<br />позитивним бактеријама. Присуство L. monocytogenes и Salmonella spp. није утврђено ни у једном од 137 испитаних узорака сировог млека магарице, док је број E. coli, колиформних бактерија, Enterobacteriaceae, квасаца и плесни и суспектног B. cereus био испод границе детекције методе. Према резултатима добијеним у овој докторској дисертацији сви испитани узорци сировог млека магарице балканске расе су задовољавали захтеве европских регулатива 92/46/ЕЕC и EC 853/2004 и са микробиолошког аспекта су у потпуности били безбедни за директно конзумирање без претходне топлотне обраде. Сирово млеко магарице балканске расе је показало различиту антибактеријску активност према Грам позитивним и Грам негативним бактеријским сојевима тестираним у оквиру ове докторске дисертације, чији интензитет је зависио од нивоа контаминације узорака млека тестираним патогеном и температуре инкубирања. Температура инкубирања од +15 &deg;C је у односу на +9 &deg;C била генерално повољнија за активност антибактеријских супстанци у млеку магарице према свим тестираним патогенима, али је антибактеријски потенцијал узорака млека магарице на +15 &deg;C био лимитиран бржим умножавањем испитаних бактерија на овој температури. То је посебно важило за узорке са већим нивоима контаминације (103 и 104 cfu/ml). Антибактеријска активност сировог млека магарице према L. monocytogenes и S. aureus се нa свим радним температурама састојала од продужeња лаг фазе и инхибирања бактеријског раста, док се у случају S. Enteritidis, S. Typhimurium, E. coli АTCC 8739, E. coli АTCC 10536 и K. pneumoniae она огледала у редукцији њиховог почетног броја и/или продужењу лаг фазе. Резултати ове докторске дисертације су указали на калцијум зависну природу антибактеријске активности сировог млека магарице према S. Enteritidis, S. Typhimurium и оба тестирана соја E. coli. Најснажнију антибактеријску активност према K. pneumoniae показали су узорци млека магарице, који су поред великог садржаја лизозима имали и велики садржај лактоферина, па би у овом случају основни механизам антибактеријског деловања млека магарице могао бити синергизам лизозима и лактоферина. Лизозим је највероватније главни носилац антибактеријске активности млека магарице балканске расе, обзиром да је у односу на други антимикробни агенс &ndash; лактоферин у тестираним узорцима млека магарице детектован у вишеструко већој концентрацији. Известан допринос антибактеријској активности млека<br />магарице балканске расе према L. monocytogenes и S. aureus могле би да дају и масне киселине са документованим антибактеријским дејством према Грам позитивним бактеријама (линолна, лауринска и олеинска киселина), које су у анализираним узорцима млека магарице у збиру чиниле од 40,3 до 54,7% од укупних масних киселина.</p> / <p>Mleko magarice je tek poslednjih godina dospelo u fokus naučnih istraživanja, iako su njegova blagotovorna terapeutska i kozmetička svojstva poznata još od antičkih vremena. Uprkos tome što znanje o funkcionalnosti mleka magarice konstantno raste, njegov antimikrobni potencijal ostaje najmanje istražen. Literaturni podaci o mikrobiologiji i eventualnoj antimikrobnoj aktivnosti mleka magarice balkanske rase koja egzistira na području Srbije i okolnih balkanskih zemalja su jako limitirani. Ovo mleko se tradicionalno konzumira bez prethodne toplotne obrade, što pokreće niz pitanja koja se odnose na zdravstvenu bezbednost konzumiranja mleka u sirovom stanju. Predmeti istraživanja ove doktorske disertacije bili su utvrđivanje mikrobiološkog kvaliteta sirovog mleka magarice balkanske rase, kao i ispitivanje njegove antibakterijske aktivnosti prema odabranim sojevima Escherichia coli, Salmonella Enteritidis, Salmonella Typhimurium, Staphylococcus aureus, Listeria monocytogenes i Klebsiella pneumoniae. U cilju utvrđivanja glavnih nosilaca antibakterijskog dejstva, kao i samog modela antibakterijskog delovanja, u odabranim uzorcima ovog mleka namenjenim izvođenju antibakterijskih ispitivanja, izvršeno je određivanje sadržaja antimikrobnih proteina - lizozima i laktoferina, kao i sadržaja kalcijuma. U uzorcima mleka magarice predviđenim za ispitivanje antibakterijske aktivnosti prema S. aureus i L. monocytogenes, određen je sadržaj masnih kiselina sa dokumentovanom antibakterijskom aktivnošću prema Gram<br />pozitivnim bakterijama. Prisustvo L. monocytogenes i Salmonella spp. nije utvrđeno ni u jednom od 137 ispitanih uzoraka sirovog mleka magarice, dok je broj E. coli, koliformnih bakterija, Enterobacteriaceae, kvasaca i plesni i suspektnog B. cereus bio ispod granice detekcije metode. Prema rezultatima dobijenim u ovoj doktorskoj disertaciji svi ispitani uzorci sirovog mleka magarice balkanske rase su zadovoljavali zahteve evropskih regulativa 92/46/EEC i EC 853/2004 i sa mikrobiološkog aspekta su u potpunosti bili bezbedni za direktno konzumiranje bez prethodne toplotne obrade. Sirovo mleko magarice balkanske rase je pokazalo različitu antibakterijsku aktivnost prema Gram pozitivnim i Gram negativnim bakterijskim sojevima testiranim u okviru ove doktorske disertacije, čiji intenzitet je zavisio od nivoa kontaminacije uzoraka mleka testiranim patogenom i temperature inkubiranja. Temperatura inkubiranja od +15 &deg;C je u odnosu na +9 &deg;C bila generalno povoljnija za aktivnost antibakterijskih supstanci u mleku magarice prema svim testiranim patogenima, ali je antibakterijski potencijal uzoraka mleka magarice na +15 &deg;C bio limitiran bržim umnožavanjem ispitanih bakterija na ovoj temperaturi. To je posebno važilo za uzorke sa većim nivoima kontaminacije (103 i 104 cfu/ml). Antibakterijska aktivnost sirovog mleka magarice prema L. monocytogenes i S. aureus se na svim radnim temperaturama sastojala od produženja lag faze i inhibiranja bakterijskog rasta, dok se u slučaju S. Enteritidis, S. Typhimurium, E. coli ATCC 8739, E. coli ATCC 10536 i K. pneumoniae ona ogledala u redukciji njihovog početnog broja i/ili produženju lag faze. Rezultati ove doktorske disertacije su ukazali na kalcijum zavisnu prirodu antibakterijske aktivnosti sirovog mleka magarice prema S. Enteritidis, S. Typhimurium i oba testirana soja E. coli. Najsnažniju antibakterijsku aktivnost prema K. pneumoniae pokazali su uzorci mleka magarice, koji su pored velikog sadržaja lizozima imali i veliki sadržaj laktoferina, pa bi u ovom slučaju osnovni mehanizam antibakterijskog delovanja mleka magarice mogao biti sinergizam lizozima i laktoferina. Lizozim je najverovatnije glavni nosilac antibakterijske aktivnosti mleka magarice balkanske rase, obzirom da je u odnosu na drugi antimikrobni agens &ndash; laktoferin u testiranim uzorcima mleka magarice detektovan u višestruko većoj koncentraciji. Izvestan doprinos antibakterijskoj aktivnosti mleka<br />magarice balkanske rase prema L. monocytogenes i S. aureus mogle bi da daju i masne kiseline sa dokumentovanim antibakterijskim dejstvom prema Gram pozitivnim bakterijama (linolna, laurinska i oleinska kiselina), koje su u analiziranim uzorcima mleka magarice u zbiru činile od 40,3 do 54,7% od ukupnih masnih kiselina.</p> / <p>Donkey&#39;s milk has recently become a very popular topic among scientific community although it has been used for therapeutic and cosmetic purposes since ancient times. Even though the number of investigations concerning donkey&#39;s milk functionality has increased, the studies on its antimicrobial potential are limited. Especially, there is a lack in literature data on microbiological quality and antibacterial activity of donkey&#39;s milk obtained from Domestic Balkan breed originated in Serbia and other countries in Balkan region. The fact that this milk is traditionally consumed without heat treatment launches a series of issues concerning its safety.<br />The aim of this thesis was to determine microbiological quality of Domestic Balkan donkey&#39;s milk, as well as to investigate its antibacterial activity against the selected strains of Escherichia coli, Salmonella Enteritidis, Salmonella Typhimurium, Staphylococcus aureus, Listeria monocytogenes and Klebsiella pneumonia. In order to determine the major antibacterial substances, as well as the model of antibacterial activity, the content of antimicrobial proteins (lysozyme and lactoferrin) and calcium was determined. The amount of fatty acids which are known to be effective against Gram-positive bacteria was determined in milk samples tested for antibacterial activity against S. aureus и L. monocytogenes. The presence of L. monocytogenes and Salmonella spp. was not detected in any of the 137 raw donkey&#39;s milk samples, while the levels of E. coli, coliform bacteria, Enterobacteriaceae, yeast and molds and suspect Bacillus cereus were below the limit of detection of the assays. According to obtained results, all examined Domestic Balkan donkeys&#39; raw milk samples were<br />in accordance with the EU regulations 92/46/ЕЕC and EC 853/2004 in terms of their<br />microbiological quality, thus being completely safe for direct consumptions, without thermal treatment. Raw Domestic Balkan donkey&#39;s milk has expressed different antibacterial activities against Gram-positive and Gram-negative bacteria strains tested in this thesis, with the intensities which depended on contamination level and incubation temperature. In comparison to temperature of +9 &deg;C, the incubation temperature of +15 &deg;C was more favourable for activity of antibacterial substances in donkey&#39;s milk against all tested pathogens. However, the antibacterial potential of donkey&#39;s milk samples at +15 &deg;C was limited with rapid multiplication of bacteria at this temperature. This was especially pronounced in samples characterized with higher contamination levels (103 and 104 cfu/ml). Antibacterial activity of raw donkey&#39;s milk against L. monocytogenes and S. aureus at all tested temperatures reflected in prolonged lag phase and inhibition of bacterial growth, while the activity against S. Enteritidis, S. Typhimurium, E. coli АTCC 8739, E. coli АTCC 10536 and K. pneumonia comprised reduction of initial bacterial numbers and/or prolongation of lag phase.<br />Results obtained in this thesis have indicated on calcium dependent antibacterial activity of raw donkey&#39;s milk against S. Enteritidis, S. Typhimurium and both E. coli strains. The most pronounced antibacterial activity against K. pneumonia was found in donkey&#39;s milk samples which besides high content of lysozyme had high content of lactoferrin, thus indicating that the basic antibacterial mechanism of donkey&#39;s milk might be the synergism between lysozyme and lactoferrin. Lysozyme was probably the substance with the highest antimicrobial activity in Domestic Balkan donkey&#39;s milk, since it was detected in significantly higher concentrations than lactoferrin. The fatty acids which are known to be effective against Gram-positive bacteria (linoleic, lauric and oleic) and which comprised from 40.3 to 54.7% of total fatty acids in tested samples, may also contribute to antimicrobial activity of Domestic Balkan donkey&#39;s milk against L. monocytogenes and S. aureus.</p>
442

Analyse der UPR vermittelten Stressantwort und ihrer Funktion während der biotrophen Entwicklung von<i> Ustilago maydis</i> / Analysis of the UPR mediated stress response and its function during the biotrophic development of <i>Ustilago maydis</i>

Hampel, Martin 18 October 2016 (has links)
Die Unfolded Protein Response (UPR) ist ein in Eukaryoten konservierter Signalweg, der durch Akkumulation von un-/fehlgefalteten Proteinen im endoplasmatischen Retikulum (ER) aktiviert wird um die Proteinhomöostase zu gewährleisten. In <i>Saccharomyces cerevisiae</i> wird die UPR durch den ER-Stresssensor Ire1p und den bZIP Transkriptionsfaktor Hac1p, oder XBP1 in höheren Eukaryoten, reguliert. In dieser Arbeit konnten die Homologe der zentralen UPR-Regulatoren im biotrophen Pilz <i>Ustilago maydis</i> charakterisiert und die UPR als essenzieller Koordinator der pathogenen Entwicklung identifiziert werden. Die Komplementation der <i>∆HAC1</i> Mutante durch <i>cib1</i> (Homolog von <i>HAC1</i>) und umfassende Expressionsanalysen zeigten, dass die Regulationsmechanismen der UPR in <i>U. maydis</i> weitestgehend konserviert sind, das Spektrum der regulierten Zielgene jedoch sekretierte Virulenzfaktoren beinhaltet die für die pathogene Entwicklung notwendig sind. So konnten durch <i>in silico</i> Vorhersage möglicher Cib1 Bindestellen (UPRE) mit pit1/pit2 und tin1-1 drei bereits charakterisierte Effektorgene als direkt regulierte UPR-Zielgene identifiziert werden. Die gezielte Deletion des vorhergesagten UPREs führt zu einer Aufhebung der ER-Stress induzierten und Cib1 abhängigen Expression von pit2 und verringert die Virulenz signifikant. Darüber hinaus konnte gezeigt werden, dass eine funktionelle UPR sowohl notwendig für eine verstärkte Expression wie auch für die korrekte Prozessierung des Pit2-Effektors innerhalb des ERs ist. Im Gegensatz zur Bäckerhefe <i>S. cerevisiae</i> und den filamentösen Ascomyceten <i>Aspergillus niger</i> und <i>Trichoderma reseei</i> kodiert die ungespleißte XBP1 mRNA in höheren Eukaryoten für einen negativen Regulator der UPR. Mit den vorliegenden Untersuchungen in <i>U. maydis</i> konnte erstmals für niedere Eukaryoten gezeigt werden, dass die ungespleißte cib1 mRNA für einen negativen Regulator kodiert, der darüber hinaus eine bislang unbeschriebene und vermutlich konservierte Funktion in der Antwort auf ER-Stress besitzt. Die genaue Kontrolle der UPR-Aktivität ist Voraussetzung für die korrekte Ausführung der verschiedenen Schritte innerhalb der pathogenen Entwicklung von <i>U. maydis</i>. Während eine vorzeitige UPR-Aktivierung zur Inhibition des zur Pflanzeninfektion notwendigen filamentösen Wachstums führt, ist die gezielte Aktivierung der UPR nach erfolgreicher Penetration der Pflanzenoberfläche und ihre andauernde Aktivität während des Wachstums <i>in planta</i> notwendig für die pathogene Entwicklung. Die direkte Interaktion zwischen Cib1 und dem Entwicklungsregulator Clp1 während dieser Entwicklungsphase führt zur Stabilisierung von Clp1 und der Modulation der Cib1 abhängigen Genexpression. Auf diese Weise wird die Proliferation <i>in planta</i> ermöglicht und eine erhöhte ER-Stressresistenz vermittelt. Zusammenfassend zeigen die gewonnenen Ergebnisse, dass die UPR in <i>U. maydis</i> als Kontrollpunkt dient, um die zelluläre Physiologie, den Entwicklungsverlauf und die Sekretion von Effektoren aufeinander abzustimmen.
443

Investigation of Anaplasma phagocytophilum and Anaplasma marginale adhesin-host cell interactions

Hebert, Kathryn S. 01 January 2016 (has links)
Anaplasma phagocytophilum and A. marginale are the etiologic agents of bovine anaplasmosis and human granulocytic anaplasmosis, respectively. As obligate intracellular pathogens, binding and entry of host cells is a prerequisite for survival. The molecular events associated with these processes are poorly understood. Identifying the adhesins mediating binding, delineating their key functional domains, and determining the molecular determinants to which they bind not only benefits better understanding of Anaplasma spp. pathobiology, but could also benefit the development of novel approaches for protecting against infection. We previously demonstrated that A. phagocytophilum outer membrane protein A (ApOmpA) is critical for bacterial binding and entry host through recognition of α2,3-sialic acid and α1,3-fucose of its receptors, including 6-sulfo-sLex. In this study, we determined that two amino acids, G61 and K64, within its binding domain (ApOmpA59-74), are essential for ApOmpA function. We also confirmed the ability of ApOmpA to act as an adhesin and invasin as it conferred adhesiveness and invasiveness to inert beads. We next extended our studies to A. marginale as it also expresses OmpA (AmOmpA) and its role in infection has not been studied. Molecular models of ApOmpA and AmOmpA were nearly identical, especially in the ApOmpA binding domain and its counterpart in AmOmpA. Antisera raised against AmOmpA or its putative binding domain inhibit A. marginale infection. AmOmpA G55 and K58 are contributory and K59 is essential for AmOmpA to bind to host cells. AmOmpA binding is dependent on α2,3-sialic acid and α1,3-fucose. Coating inert beads with AmOmpA conferred the ability to bind to and be taken up by host cells, confirming that it acts as an adhesin and invasin. 6-sulfo-sLex is dispensable for AmOmpA binding and A. marginale infection. ApOmpA works cooperatively with Asp14 (14-kDa A. phagocytophilum surface protein) to promote optimal infection of host cells. We found that Asp14 is conserved across A. phagocytophilum strains and in A. marginale and confirmed the ability of Asp14 to act as an adhesin and invasin as it conferred adhesiveness and invasiveness to inert beads. Collectively, this work advances our understanding of A. phagocytophilum and A. marginale adhesion and invasion of host cells.
444

Investigations into the cellular interactome of the PB2 protein expressed by seasonal and highly pathogenic avian influenza viruses

Arnold, Ulrike 09 August 2018 (has links)
PB2 ist ein essentieller Bestandteil der trimeren RNA abhängigen RNA Polymerase von Influenzaviren und ist bekannt für seine Schlüsselrolle in der Bestimmung des Viruswirtsspektrums. Diese Arbeit diente der Identifizierung neuer Interaktionspartner von PB2 eines saisonalen und eines hochpathogenen Influenzavirus Stammes im Kontext infizierter humaner alveolar Epithelzellen (A549) unter Einsatz massenspektrometrischer Analysen. Die anschließende Untersuchung ausgewählter zellulärer Interaktoren hatte zum Ziel, deren Einfluss auf den Replikationszyklus der Influenzaviren zu bestimmen, sowie Unterschiede in ihrer Relevanz für das saisonale und das hochpathogene Virus aufzuzeigen. Die Erzeugung und Nutzung von Influenzaviren die einen Strep-tag an ihrem PB2 Protein tragen ermöglichte eine Anreicherung von PB2 und seiner Interaktionspartner. Die anschließende massenspektrometrische Analyse identifizierte 22 potentielle PB2 Interaktionspartner. Eine Auswahl an 13 Proteinen wurde tiefer gehend analysiert und eine Komplexbildung mit PB2 konnte für 9 Proteine bestätigt werden. Darüber hinaus zeigten 11 Proteine einen Polymerase stimulierenden bzw. hemmenden Effekt. Das Polymerase stimulierende Protein HSPA8 wurde zur weiteren Untersuchung ausgewählt. Während ein Einfluss von HSPA8 auf den hochpathogenen Influenzastamm nicht abschließend geklärt werden konnte, wurde seine Bedeutung für den Vermehrungszyklus des saisonalen Stammes aufgezeigt. Die Überexpression von HSPA8 führte zu einer Steigerung der Polymerase-Aktivität, wohingegen die Erniedrigung des HSPA8 Spiegels in einer Verringerung der viralen Replikation und der Polymerase-Aktivität resultierte. Interessanterweise führte die Erniedrigung des HSPA8 Spiegels auch zu stark verminderter PB2-Expression, jedoch nur im Falle des saisonalen Influenzastammes. Dieser Befund deutet auf eine Rolle von HSPA8 als PB2-Chaperon, notwendig für Proteinstabilität von saisonalen aber nicht hochpathogenen Influenzaviren, hin. / PB2 is an essential component of the influenza virus trimeric RNA dependent RNA polymerase and is known to play a key role in virus host range determination. Here, a combined affinity-purification/mass spectrometric approach was performed to identify novel interaction partners of PB2 of seasonal and highly pathogenic viral strains in infected human alveolar epithelial cells (A549). The subsequent analysis of selected cellular interaction partners aimed to determine the influence of these proteins on the replication cycle, as well as to determine differences in their relevance for the seasonal and the highly pathogenic influenza virus strain. Generation and use of recombinant influenza viruses carrying a Strep-tag at their PB2 protein allowed for enrichment of PB2 and its interaction partners. The subsequent mass spectrometric analysis identified 22 potential PB2 interaction partners. A selection of 13 proteins was further analyzed, and co-precipitation with PB2 was confirmed for 9 proteins. Moreover, an inhibitory or stimulatory effect on polymerase activity was observed for 11 proteins. The polymerase stimulating protein HSPA8 was selected for further investigation. While the influence of HSPA8 on the highly pathogenic strain remained unclear, its importance for seasonal influenza virus life cycle was demonstrated. Overexpression of HSPA8 resulted in increased polymerase activity while HSP8 knock down resulted in reduction of viral replication and viral polymerase activity. Intriguingly, the knock down of HSPA8 led to a strong decrease of PB2 protein expression. However, this was only observed for seasonal PB2. These results indicate a role of HSPA8 as a PB2 chaperone, necessary for protein stability of seasonal but not highly pathogenic influenza virus.
445

Caractérisation de la RNase P nucléaire de Candida glabrata et amélioration des outils d’édition de son génome / Characterization of the nuclear RNase P of Candida glabrata and improvement of genome editing tools

Dahman, Yacine 19 September 2018 (has links)
Candida glabrata est une levure pathogène opportuniste, apparaissant aujourd’hui comme la deuxième cause de candidémie en Europe et en Amérique du Nord. Cette levure présente de nombreuses particularités génomiques telles que la présence de nouveaux domaines structuraux au sein d’ARN non-codants ubiquitaires. Le premier aspect de cette thèse a consisté en l’étude de la sous-unité ARN atypique de la Ribonucléase P nucléaire de C. glabrata. Cet ARN contient trois grand domaines additionnels octroyant au transcrit une taille trois fois plus élevée que la moyenne des sous-unités ARN des RNase P eucaryotiques. Les expériences réalisées ont permis une meilleure compréhension du rôle de ces domaines additionnels et ont démontré la présence inédite de la protéine Rcl1 au sein du complexe de la RNase P. Dans un second temps ce travail de thèse a aussi contribué à l’amélioration des outils d’édition du génome de C. glabrata existants. De nouvelles cassettes intégratives de faible taille et positivement sélectionnables ont été mises au point. Ces éléments présentent toutes les caractéristiques permettant leur utilisation dans la modification du génome de souches sauvages et d’isolats cliniques de C. glabrata. / Candida glabrata is an opportunistic pathogenic yeast, and is today the second causative agent of candidemia in Europe and North America. This yeast has many genomic peculiarities such as the presence of new structural domains within ubiquitous non-coding RNAs. The first aspect of this thesis was the study of the atypical RNA subunit of the nuclear Ribonuclease P of C. glabrata. This RNA contains three large additional domains giving the transcript an overall size more than three times larger than the average eukaryotic RNase P RNA subunits. The experiments performed led to a better understanding of the role of these additional domains and demonstrated for the first time the presence of the Rcl1 protein within the RNase P complex. Secondly, this thesis work also contributed to the improvement of existing genome editing tools in C. glabrata. New small and positively selectable integrative cassettes have been developed. These elements exhibited all the required characteristics for their use in wild-type strains and clinical isolates of C. glabrata.
446

Guenon Hybridization and Its Effects on Parasite Infection in Gombe National Park, Tanzania

Unknown Date (has links)
Fecal samples were obtained from guenons in Gombe National Park utilizing noninvasive, opportunistic sampling techniques. Samples were then examined for the presence of gastrointestinal parasites using chlorazol black stain, Lugol’s iodine staining, as well as concentration via fecal flotation with Sheather’s sugar solution. Results were analyzed using SPSS (IBM corp), and compared to other forested regions in Africa to determine whether hybridization influences parasite prevalence of these guenons living in Gombe; and if these guenons differ from similar guenons in other regions of Africa. The null hypothesis was unable to be rejected in all cases; hybridization could not be stated as a contributing factor for differences found in parasitic prevalence rates. Furthermore, no statistical difference was found between Gombe’s guenons, and those living in other regions of Africa in most cases. The author suspects that the abundance of parasitic generalists discovered, small sample size, and opportunistic sampling protocol contribute to these finding. / Includes bibliography. / Thesis (M.A.)--Florida Atlantic University, 2017. / FAU Electronic Theses and Dissertations Collection
447

Avaliação da qualidade microbiológica de amostras de mercado de queijo mussarela, elaborado a partir de leite de búfala (Bubalus bubalis). / Evaluation of the microbiology quality of mozzarella cheese, produced with milk of buffalo (Bubalus bubalis) and acquired in the market.

Olivieri, Débora de Azevedo 17 May 2004 (has links)
A mussarela de leite de búfala, principal queijo obtido a partir desse leite no Brasil, é um produto praticamente novo no mercado, com alta aceitação pelos consumidores e excelentes perspectivas. Seguindo tecnologia de produção tradicional italiana, caracteriza-se pela intensa manipulação durante a sua elaboração. No presente trabalho, avaliou-se a qualidade microbiológica de duas marcas comerciais de queijo mussarela de leite de búfala, sendo uma das marcas comercializada em embalagem com soro (A) e a outra em embalagem sem soro e a vácuo (B), adquiridas no comércio varejista da cidade de Piracicaba/SP. As análises microbiológicas compreenderam a determinação do NMP de coliformes totais e fecais, a pesquisa de Listeria spp., a contagem de Staphylococcus coagulase-positiva e a pesquisa de Salmonella spp. Com base nos resultados obtidos, pode-se afirmar que as duas marcas analisadas encontram-se em acordo com os padrões microbiológicos legais vigentes. No entanto, pôde-se notar que a qualidade microbiológica dos queijos comercializados em embalagem com soro mostrou-se inferior à dos oferecidos ao consumo em embalagem sem soro e a vácuo. / Buffalo mozzarella cheese, main cheese obtained from buffalo milk in Brazil, is practically a recent product in the market, showing high acceptance by consumers and excellent perspectives. Following traditional italian production tecnology, this cheese is intensely manipulated during its manufacture. In this study, the microbiology quality of two commercial brands of buffalo mozzarella cheese was evaluated, being one of the brands presented in bag with whey (A) while the other one is presented in bag without whey and under vacuum (B). The samples were acquired in the Piracicaba city commerce. Microbiology analysis comprehended the determination of the MPN of total and fecal coliforms, the Listeria spp. presence / absence, the coagulase-positive Staphylococcus accounting and the Salmonella spp. presence / absence. Based on the analysis results, both brands are according to current legal microbiology standards specifications. However, the microbiology quality of the cheeses packed in bag with whey was lower than the microbiology quality of those offered in bag without whey and under vacuum.
448

Avaliação do efeito de moduladores epigenéticos na biossíntese de produtos naturais em fungos / Evaluation of the effect of epigenetic modifiers in the biosynthesis of fungal natural products.

Almeida, Marília Oliveira de 02 July 2014 (has links)
A manipulação seletiva de alvos epigenéticos usando pequenas moléculas inibidoras das enzimas histona-desacetilases (HDACs) e DNA metiltransferases (DNMTs) é uma estratégia para estimular a expressão das vias biossintéticas e a produção de novos metabólitos secundários em fungos. Neste trabalho, inibidores de histonadesacetilases (butirato de sódio, ácido hidroxâmico suberoilanilida e ácido valproico) e inibidores de DNA metiltransferases (5-azacitidina, hidralazina, procaína e procainamida) foram suplementados em culturas líquidas e sólidas dos fungos endofíticos Fusarium oxysporum SS46, Hyphodermella corrugata FLe8.2 e Chaetomium globosum VR10, das linhagens comerciais Fusarium oxysporum ATCC MYA 4623 e Chaetomium globosum ATCC 56726 e do fitopatógeno Botrytis cinerea B0510. O fungo endofítico H. corrugata FLe8.2, em meio PDB, produziu o composto 2-(2-metoxifenil)-4H-piran-4-ona, e sua cultura em meio Czapek suplementada com hidralazina levou ao isolamento de 3-metil-1,2,4-triazolo[3,4-a]-ftalazina. O tratamento de F. oxysporum SS46 e F. oxysporum ATCC MYA 4623 com hidralazina em meio Czapek levou ao isolamento de um novo composto, 2H-[1,2,4]triazino[3,4- a]-ftalazina. Nestas culturas houve biotransformação da hidralazina pelos fungos, provavelmente como mecanismo de desintoxicação. Ainda, a hidralazina teve um efeito inibidor sobre a biossíntese do ciclohexadepsipeptídeo beauvericina em F. oxysporum SS46. Nas culturas de C. globosum VR10 em meio Czapek os inibidores de HDACs e de DNMTs suprimiram a biossíntese de chaetoglobosinas. A adição de ácido valproico na cultura de C. globosum VR10 em meio PDB eliciou a produção da chaetoviridina B. A adição de 5-azacitidina nas culturas de C. globosum VR10 em meio sólido PDA não modificou a produção da chaetoglosina A. A produção de chaetoviridina B por C. globosum ATCC 56726 em meio PDA foi inibida na menor concentração de 5-azacitidina, 50 ?M, e retomada na concentração de 150 ?M. O tratamento de B. cinerea B0510 com ácido hidroxâmico suberoilanilida SAHA levou à biossíntese de um novo composto, ácido 5-benzil-2,3-di-hidroxi-3-isopropil-4- oxotetrahidrofuran-2-carboxílico, o qual também foi isolado da linhagem geneticamente modificada B. cinerea Bc ?STC2. No geral, considerando as linhagens fúngicas estudadas, os resultados mostram que a adição de moduladores químicos que atuam em mecanismos epigenéticos promove mudanças no perfil de metabólitos secundários. / The selective manipulation of epigenetic targets using small molecule inhibitors of histone deacetylase (HDAC) and DNA methyltransferase (DNMT) activities is a strategy to elicit the expression of biosynthetic pathways and production of new secondary metabolites in fungi. In this work, HDAC inhibitors (sodium butyrate, suberohydroxamic acid and valproic acid) and DNMT inhibitors (5-azacitidine, hydralazine, procaine and procainamide) were supplemented in liquid and solid cultures of the endophytic fungi Fusarium oxysporum SS46, Hyphodermella corrugata FLe8.2 and Chaetomium globosum VR10, of the commercial fungal strains Fusarium oxysporum ATCC MYA 4623 and Chaetomium globosum ATCC 56726 and of the phytopathogenic fungus Botrytis cinerea B0510. The endophytic fungus H. corrugata FLe8.2 produced 2-(2-methoxyphenyl)-4H-pyran-4-one in PDB medium, while in the presence of hydralazine in Czapek medium the fungus produced 3- methyl-1,2,4-triazolo[3,4-a]-phthalazine. Treatment of F. oxysporum SS46 and F. oxysporum ATCC MYA 4623 with hydralazine in a Czapek medium led to the isolation of new compound, 2H-[1,2,4]triazino[3,4-a]-phthalazine. Hydralazine was biotransformed by these three fungi probably as a detoxification strategy. In addition, hydralazine also inhibited the biosynthesis of the cyclodepsipeptide beauvericin by F. oxysporum SS46. HDAC and DNMT inhibitors suppressed chaetoglobosins\' biosynthesis by C. globosum VR10 cultures in Czapek medium. The biosynthesis of chaetoviridin B by C. globosum VR10 was elicited by acid valproic in PDB medium. The production of chaetogosin A by C. globosum VR10 in PDA medium has not been affected by 5-azacitidine. The biosynthesis of chaetoviridin B by C. globosum ATCC 56726 in PDA medium was inhibited in the presence of lower concentration 5- azacitidine (50 ?M) and recovered in the higher concentration (150 ?M). Treatment of B. cinerea B0510 with suberohydroxamic acid led to the biosynthesis of the new compound 5-benzyl-2,3-dihydroxy-3-isopropyl-4-oxotetrahydrofuran-2-carboxylic acid, which was also isolated from the genetically modified strain B. cinerea Bc ?STC2. Results showed that chemical compounds that act in epigenetic mechanisms can induce changes in the secondary metabolite profiles in the fungal strains studied in this work.
449

Prevalência e fatores associados ao estado de portador de Neisseria spp. em núcleos familiares: estudo de base populacional / Prevalence and factors associated with Neisseria spp. carrier state in family households: population-based study

Lima, Jaqueline Costa 24 January 2019 (has links)
Introdução - O estado de portador assintomático ocorre quando o hospedeiro alberga o agente etiológico sem apresentar doença. Os fatores associados ao estado de portador de Neisseria não patogênica (NNP) e Neisseria meningitidis (Nm) diferem entre si, no entanto, as características epidemiológicas de ambas ainda são pouco exploradas. Objetivos - Estimar a prevalência, analisar possíveis diferenças em distintos estratos sociais, identificar o genótipo das cepas isoladas, assim como, investigar fatores associados ao estado de portador de Nm e de NNP em núcleos familiares residentes em Cuiabá-MT. Método - Estudo transversal de base populacional, desenvolvido de 07/2016 a 07/2017, incluindo todos os moradores de uma amostra probabilística estratificada composta de 243 núcleos familiares (domicílios) de área urbana, em bairros de alta e baixa renda do município de Cuiabá. Foram incluídos os domicílios com ao menos uma criança de 12 e 60 meses de idade. Todos os residentes nos domicílios selecionados foram submetidos a coleta de swab de orofaringe para o isolamento de Neisseria spp. Para a comparação de proporções utilizou-se o teste do qui-quadrado. Foram estimadas as razões de prevalências (RP) com seus respectivos intervalos de confiança 95% (IC95%) e para a investigação de fatores associados ao estado de portador de Nm e de NNP foram utilizados modelos de regressão de Poisson. O ajuste das variáveis no modelo final foi avaliado pelo teste de Hosmer e Lemeshow. Resultados: Foram estudados 1.050 indivíduos residentes em 233 núcleos familiares. A prevalência de portadores de Neisseria spp. foi de 10,6% (111/1.050), a de Nm de 2,4% (25/1.050) e de NNP de 8,2% (86/1.050). Dentre 111 portadores, 62 (56,0%) foram por N. lactamica, 25 (22,0%) por Nm, 21 (19,0%) por N. subflava., duas (2,0%) por N. mucosa e uma (1,0%) por N. polysaccharea. Das Nm, 76% (19/25) eram não grupáveis, 16% (4/25) eram do sorogrupo B, 4% (1/25) do sorogrupo C e 4% (1/25) do sorogrupo W. A prevalência de Nm em bairros de baixa renda foi de 2,8% (23/816) e nos de alta renda de 0,8% (2/234) (p=0,058), com uma razão de prevalência (RP) de 3,3 (IC95%:0,8-13,9). A prevalência de NNP em bairros de baixa renda foi de 8,2% (67/816) e em bairros de alta renda de 8,1% (19/234), com uma RP de 1,0 (IC95%:0,6-1,6). Permaneceram independentemente associados ao estado de portador de Nm após ajuste para conviver com tabagista no domicílio e por número de pessoas por dormitório: i) residir em bairro de baixa renda (RPajustada=2,6); ii) faixa etária de 5 a 14 anos (RPajustada=2,7); iii) faixa etária de 15 a 29 anos (RPajustada=2,4) e faixa etária de 30 e anos e mais (RPajustada=1,4). Após o ajuste para a infecção respiratória nos últimos cinco dias, apresentar asma, três ou mais pessoas por dormitório e sexo masculino, mostraram-se independentemente associados ao estado de portador de NNP: i) pertencer a faixa etária de cinco a 14 anos de idade (RPajustada=2,8) e de menores de cinco anos de idade (RPajustada=7,2); ii) residir em casa precária/quitinete (RPajustada=2,1). Conclusões - O contexto social influencia o estado de portador de Nm e NNP. As vacinas conjugadas meningocócicas podem prevenir doenças direta e indiretamente e tais resultados podem subsidiar a elaboração de estratégias de intervenção, especialmente para a identificação de grupos alvo de programas de vacinação. / Introduction - The asymptomatic carrier state occurs when the host harbors the etiologic agent without presenting disease. The associated factors with the carrier state of non-pathogenic Neisseria (NNP) and Neisseria meningitidis (Nm) differ among them, however, the epidemiological characteristics of both are still poorly explored. Objectives - To estimate the prevalence, to analyze possible differences in different social strata, to identify the genotype of the isolated strains, as well as to investigate associated factors with the Nm and NNP carrier state in family\'s households living in Cuiabá-MT. Methods - A cross-sectional study was conducted in 07/2016 a 07/2017, in the city of Cuiabá, including all residents of a stratified probabilistic sample which was composed by 243 urban households (families nucleus) with high and low income neighborhoods of the city of Cuiabá. Households with at least one child between 12 and 60 months age were included. All residents in the selected households were submitted to oropharynx swab collection for the isolation of Neisseria spp. To compare proportions the chi-square test was used. For the estimates of prevalence ratios (PR) and the respective 95% confidence intervals (95% CIs), for the analysis of the associated factors with Nm and NNP carrier state Poisson regression models were used. The adjustment of the variables in the final model was evaluated by the Hosmer e Lemeshow test. Results - A total of 1,050 individuals residing in 233 families nucleus were studied. The prevalence of Neisseria spp. was of 10.6% (111/1,050), Nm of 2.4% (25/1,050) and NNP of 8.2% (86/1,050). Among 111 carriers, 62 (56.0%) were by N. lactamica, 25 (22.0%) by Nm, 21 (19.0%) by N. subflava, two (2.0%) by N. mucosa and one (1.0%) by N. polysaccharea. Of the Nm, 76% (19/25) were non-grouping, 16% (4/25) were serogroup B, 4% (1/25) serogroup C and 4% (1/25) serogroup W. Prevalence of Nm in low-income neighborhoods was 2.8% (23/816) and high-income (0.8%) (2/234) (p=0.058), with a prevalence ratio of 3.3 (95% CI:0.8-13.9). The prevalence of NNP in low-income neighborhoods was 8.2% (67/816) and in high-income neighborhoods of 8.1% (19/234), with a PR of 1.0 (95% CI:0,6-1,6). They remained independently associated with Nm state after adjusting to live with a smoker at home and by number of people per dormitory: i) living in a low-income neighborhood (PRadjusted=2.6); ii) age group of 5 to 14 years (PRadjusted=2.7); iii) age range of 15 to 29 years (PRadjusted=2.4) and age group of 30 years and over (PRadjusted=1.4). After adjusting for respiratory infection in the last five days, presenting asthma, three or more people per dormitory and male sex, were independently associated with NNP status: i) belonging to the age group of five to 14 years of age (PRadjusted=2.8) and of children under five years of age (RPadjusted=7.2); ii) residing in a precarious home/kitchenette (PRadjusted= 2.1). Conclusions - The social context influences the carrier state of Nm and NNP. Meningococcal conjugate vaccines can prevent diseases directly and indirectly and such results may support the development of intervention strategies, especially for the identification of target groups of vaccination programs.
450

Avaliação de extratos de plantas quanto à atividade antimicrobiana e à detoxificação de micotoxinas / Evaluation of plant extracts on antimicrobial activity and detoxification of mycotoxins

Ponzilacqua Silva, Bárbara 12 December 2018 (has links)
A exposição humana a microrganismos patogênicos e suas toxinas em alimentos constitui um grave problema de saúde pública. O uso indiscriminado de antimicrobianos convencionais promove o aumento da resistência dos microrganismos às principais moléculas existentes no mercado. Além disso, as limitações do uso de substâncias químicas em matérias primas alimentares têm estimulado pesquisas para o desenvolvimento de metodologias eco-amigáveis para evitar a multiplicação de fungos e/ou eliminar suas toxinas. O Staphylococcus aureus é uma das principais bactérias patogênicas que apresenta taxas elevadas de resistência aos antimicrobianos, e por este motivo tem sido objeto de estudo de pesquisas que tentam identificar novos compostos bioativos para o combate de infecções. O Aspergillus parasiticus é um dos principais fungos produtores de aflatoxinas, substâncias carcinogênicas que contaminam diversos tipos de cereais antes e após o processamento. Estudos recentes demonstraram que extratos de plantas possuem atividade antimicrobiana e antifúngica, além de potencial para degradação de micotoxinas. Neste contexto, o presente estudo teve por objetivos avaliar a atividade antimicrobiana in vitro de extratos brutos e liofilizados de folhas de maracujá, araçá, alecrim e orégano sobre células planctônicas de S. aureus e A. parasiticus, bem como verificar a capacidade dos referidos extratos em degradar in vitro a aflatoxina B1 (AFB1), ocratoxina A (OTA) e zearalenona (ZEA). Os efeitos antibacterianos e antifúngicos dos extratos foram avaliados através da determinação da concentração inibitória mínima (CIM) e concentração bactericida / fungicida mínima (CBM/CFM). Os ensaios de degradação da micotoxinas foram realizados em diferentes tempos de incubação (12-48 h) a 37º C, utilizando-se cromatografia líquida de alta eficiência (HPLC) para determinação das concentrações das micotoxinas. O maracujá não demonstrou atividade antimicrobiana tanto para S. aureus quanto para A. parasiticus. Dos quatro extratos estudados, o araçá demonstrou o maior efeito antibacteriano, cujos valores de CIM para extratos bruto e liofilizado foram 0.39 mg/mL e 0.45 mg/mL, respectivamente. Os menores valores de CIM para A. parasiticus foram obtidos com o orégano liofilizado (8.33 mg/mL) e o araçá bruto (3.215 mg/mL). Contudo, não foi possível identificar valores de CFM para o fungo analisado. Não houve efeito de degradação de OTA e ZEA por nenhum dos extratos avaliados. Todos os extratos reduziram a concentração de AFB1 após 48 h de incubação. A maior porcentagem (60.3%) de redução de AFB1 foi obtida com o extrato de alecrim após 48 h de incubação. A atividade antimicrobiana demonstrada pelos extratos das plantas avaliadas indica um potencial para sua aplicação no combate a bactérias patogênicas e fungos toxigênicos. Este é o primeiro estudo realizado com extratos dessas quatro espécies de plantas que evidenciou a capacidade de redução in vitro de AFB1. / Human exposure to pathogenic microorganisms and their toxins in food is a serious public health problem. The indiscriminate use of conventional antimicrobials increases the resistance of microorganisms to the main molecules available in the market. In addition, limitations on the use of chemical substances in food raw materials have stimulated researches for the development of eco-friendly methodologies to avoid the multiplication of fungi and/or eliminate their toxins. Staphylococcus aureus is one of the major pathogenic bacteria with high rates of antimicrobial resistance, and for this reason it has been the subject of research studies aiming to identify new bioactive compounds to combat infections. Aspergillus parasiticus is one of the main aflatoxin-producing fungi, which are carcinogenic substances that contaminate many types of cereals before and after processing. Recent studies have demonstrated that plant extracts have antimicrobial and antifungal activity, as well as potential for degradation of mycotoxins. In this context, the objective of the present study was to evaluate the in vitro antimicrobial effects of crude and lyophilized extracts of leaves from sweet passion fruit, araçá, rosemary and oregano on planktonic cells of S. aureus and A. parasiticus. The in vitro degradation of aflatoxin B1 (AFB1), ochratoxin A (OTA) and zearalenone (ZEN) by the crude extracts was also investigated. The antimicrobial and antifungal effects were evaluated by determining the minimum inhibitory concentration (MIC) and minimum bactericidal / fungicidal concentration (MBC / MFC). Mycotoxin detoxification assays were conducted at different incubation times (12-48h) at 37 °C. The concentrations of mycotoxins were determined by high performance liquid chromatography (HPLC). Sweet passion fruit had no antimicrobial activity on S. aureus or A. parasiticus. Out of the four extracts evaluated, araçá showed the highest antimicrobial effect with MIC of 0.39 mg/mL and 0.45 mg/mL for crude and lyophilized extracts, respectively. The lowest MIC values for A. parasiticus were obtained with lyophilized oregano (8.33 mg/mL) and crude araçá (3.215 mg/mL). However, no MFC values were obtained for the analyzed fungi. Although OTA e ZEN were not degraded by any extract evaluated, all extracts reduced the concentration of AFB1 after 48 h of incubation. The highest percentage of AFB1 reduction (60.3%) was obtained with rosemary extract after 48h of incubation. The antimicrobial activity demonstrated by extracts of the evaluated plants indicates a potential for application against pathogenic bacteria and toxigenic fungi. This is the first study carried out with extracts of these four plants species that demonstrated the in vitro ability for AFB1 reduction.

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