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A mancha preta dos citros causada pelo fungo Guignardia citricarpa Kiely [Phyllosticta citricarpa (McAlp.) Van der Aa], possui duas formas de infecção, conídios e ascósporos. Informações a respeito da importância dos conídios na epidemiologia da doença são escassas ou controversas. Visando uma maior compreensão sobre o patossistema citros-G. citricarpa (P. citricarpa), os objetivos desta dissertação foram: elaborar e validar uma escala diagramática para avaliação da severidade da mancha preta em folhas de citros; verificar o efeito da temperatura e da duração do período de molhamento na formação de apressórios formados a partir de conídios; observar por meio de microscopia eletrônica de varredura a germinação de conídios e a formação de apressórios sobre folhas destacadas de limão 'Siciliano' submetidas a diferentes temperaturas e períodos de molhamento. A escala diagramática com níveis de severidade de 1; 3; 6; 12; e 24% de área foliar lesionada foi validada por dois grupos de avaliadores, com e sem experiência na quantificação de doenças. Comparada com a avaliação sem escala, o uso da escala proporcionou melhor precisão e acurácia tanto para avaliadores experientes como inexperientes, quando considerada a estimativa média dos mesmos. Na maioria dos casos, os desvios entre estimativas e severidade atual da doença foram mais evidentes para os níveis de severidade entre 5 e 15%. A reprodutibilidade das avaliações resultou em valores de R 2 mais uniformes para a maioria dos avaliadores experientes. Diferenças consideráveis de precisão foram observadas entre avaliadores inexperientes. O efeito da temperatura (10 o C - 40 o C) e da duração do molhamento (4 - 48 h) na formação de apressórios formados a partir de conídios de G. citricarpa (P. citricarpa) foi avaliado sob condições "in vitro" e sobre a superfície de folhas de limão 'Siciliano'. A formação de apressórios ocorreu em todas as temperaturas a partir de 12 horas de molhamento, sendo os extremos de temperatura (10 o C e 40 o C) menos favoráveis à formação de apressórios. A temperatura mínima para formação de apressórios, estimada pela função beta generalizada foi de 3 o C e a máxima de 48,4 o C, ambas para 48 horas de molhamento. A formação de apressórios foi consideravelmente favorecida pela duração do período de molhamento, com o máximo de apressórios formados a 24 horas de molhamento, para a maioria das temperaturas. O período de molhamento constituído de 48 horas foi essencial para que os esporos submetidos a temperaturas de 10 o C e 40 o C, formassem apressórios. A superfície de resposta obtida pela multiplicação das funções beta generalizada e monomolecular apresentou um ajuste satisfatório para os dados observados na estimativa da porcentagem relativa de apressórios formados (R 2 =0,75). As amostras observadas em microscopia eletrônica de varredura possibilitaram a aquisição de imagens de conídios e apressórios sobre a superfície de folhas de limão 'Siciliano' em todas as combinações de temperatura e molhamento avaliadas. / Citrus black spot caused by Guignardia citricarpa Kiely [Phyllosticta citricarpa (McAlp.) van der Aa] presents two infection forms, conidia and ascospores. Information regarding the importance of the conidia in the epidemiology of the disease is scarce and controversial. Seeking a better understanding on the pathosystem citrus-G. citricarpa (P. citricarpa), the objectives of this dissertation were: elaborate and validate a diagrammatic scale for assessments of the citrus black spot; verify the effect of the temperature and of the wetness duration in the appressorium formation; observe through scanning electron microscopy the germination and formation of appressorium on outstanding lemon 'Siciliano' leaves submitted to different temperatures and wetness duration. The diagrammatic scale with severity levels of 1; 3; 6; 12; and 24% of diseased leaf area was validated by two groups of raters, with experience and without experience in the quantification of diseases. The scale provided better precision and accuracy for both experienced and inexperienced raters, considering the estimates average of them. In the majority of cases, the bias between estimated and actual disease severity were more evident for disease severity levels between 5 and 15%. The reproducibility of assessments resulted in R 2 with more uniforms values for the majority of the experienced raters, considerable differences of precision were observed among inexperienced raters. The effect of the temperature (10 o C - 40 o C) and of the wetness duration (4 - 48 h) in the germination of conidia and appressoria formation of G. citricarpa (P. citricarpa), was assessed "in vitro" and on the surface of lemon 'Siciliano' leaves. The appressoria formation occurred in all the temperatures starting from 12 hours of wetness. The extreme temperatures (10 o C and 40 o C) were less favorable to the apressorium formation. The minimum temperature for appressorium formation, estimated by generalized beta function was of 3 o C and the maximum of 48,4 o C, both for 48 hours of wetness. The appressorium formation was favored considerably by the wetness duration period, with the maximum of apressoria formed at 24 hours of wetness, for majority of the temperatures. The wetness duration period constituted of 48 hours was essential so that the spores submitted to temperatures of 10 o C and 40 o C, formed appressorium. The response surface obtained by the multiplication of the generalized beta and monomolecular functions provided a close fit to observed data in the estimate of the relative percentage of formed appressorium (R 2 =0,75). The samples observed in scanning electron microscopy made possible the acquisition of images of conidia and appressoria on the surface of lemon 'Siciliano' leaves in all the temperature combinations and wetness evaluated.

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Made available in DSpace on 2015-03-26T13:37:41Z (GMT). No. of bitstreams: 1 texto completo.pdf: 321107 bytes, checksum: 908241592d4e38b9e9d64df652b74e85 (MD5) Previous issue date: 2010-02-10 / Coordenação de Aperfeiçoamento de Pessoal de Nível Superior / The rice crop is of great importance on the world stage because it serves as the main food for millions of people around the world. However, several factors affect its production, mainly the diseases. The seed spot is caused by various fungi such as Bipolaris oryzae, Pyricularia grisea, Microdochium oryzae, Phoma sorghina, Cladosporium sp. and others. In seeds, this disease can cause reduction on germination and decrease on production due to the sterility of panicles. The application of silicon (Si) has been studied as an alternative in the control of plant diseases. Thus, the aim of this work was to evaluate the effect of calcium silicate and rice husk hulls in the incidence of fungi associated with flooded rice seed. Rice plants were submitted with rice husk hulls and calcium silicate in the doses 0, 153 and 357 kg/ha of Si. Two experiments were performed, one in the 2007/2008 harvest season and another in 2008/2009 and later seed samples were analyzed in the laboratory. Evaluations of Browning Index Seeds (BIS), the Si concentration in the pericarp of the seeds and determination of seedborne fungi were executed. There was no significant difference from the F test for IES and Si concentration for the two sources of Si in the doses used in both experiments. The efficiency of the products used and the concentration of Si in the pericarp of the seeds were similar, independently of the applied dose. In general, the fungi found in both experiments were Bipolaris oryzae, Curvularia lunata, Fusarium semitectum, F. solani, Microdochium oryzae, Nigrospora oryzae, Pyricularia grisea, Trichoconiella padwickiii and Cladosporium cladosporioides. The incidence of these fungi was not affected by the application of rice husk hulls or calcium silicate in the doses used. / A cultura do arroz tem grande importância no cenário mundial, pois se faz base da alimentação de milhões de pessoas ao redor do mundo. Porém, vários fatores afetam sua produção, dentre eles, as doenças. As manchas em sementes é causada por diversos fungos como Bipolaris oryzae, Pyricularia grisea, Microdochium oryzae, Phoma sorghina, Cladosporium sp., dentre outros. Em sementes, esta doença pode levar a redução da germinação e queda na produção devido à esterilidade de panículas. A aplicação de silício (Si) tem sido estudada como alternativa para o auxílio no controle de doenças de plantas. Desta forma, objetivou-se com este trabalho avaliar o efeito da aplicação de silicato de cálcio e de casca de arroz carbonizada na incidência de fungos associados a manchas em sementes de arroz. Plantas de arroz foram submetidas à aplicação de cinza de casca de arroz e silicato de cálcio nas doses utilizadas foram de 0; 153 e 357 kg/ha de Si. Dois experimentos foram conduzidos, sendo um na safra 2007/2008 e outro na safra 2008/2009 e, posteriormente, amostras de sementes foram analisadas em laboratório. Foram realizadas avaliações do Índice de Escurecimento de Sementes (IES), da Concentração de Si no pericarpo das sementes e a determinaçãp dos fungos presentes nas sementes. Não foi encontrada diferença significativa a partir do teste F para IES e concentração de Si para as duas fontes de Si empregadas, nas doses utilizadas nos dois experimentos, ou seja, a eficiência dos produtos utilizados e a concentração de Si no pericarpo das sementes foi semelhante, independente da dose aplicada. Em geral, os fungos encontrados em ambos experimentos foram Bipolaris oryzae, Curvularia lunata, Fusarium semitectum, F. solani, Microdochium oryzae, Nigrospora oryzae, Pyricularia grisea, Trichoconiella padwickiii e Cladosporium cladosporioides. A incidência destes fungos não foi afetada pela aplicação de casca de arroz carbonizada ou silicato de cálcio nas doses utilizadas.

A mancha preta dos citros causada pelo fungo Guignardia citricarpa Kiely [Phyllosticta citricarpa (McAlp.) Van der Aa], possui duas formas de infecção, conídios e ascósporos. Informações a respeito da importância dos conídios na epidemiologia da doença são escassas ou controversas. Visando uma maior compreensão sobre o patossistema citros-G. citricarpa (P. citricarpa), os objetivos desta dissertação foram: elaborar e validar uma escala diagramática para avaliação da severidade da mancha preta em folhas de citros; verificar o efeito da temperatura e da duração do período de molhamento na formação de apressórios formados a partir de conídios; observar por meio de microscopia eletrônica de varredura a germinação de conídios e a formação de apressórios sobre folhas destacadas de limão 'Siciliano' submetidas a diferentes temperaturas e períodos de molhamento. A escala diagramática com níveis de severidade de 1; 3; 6; 12; e 24% de área foliar lesionada foi validada por dois grupos de avaliadores, com e sem experiência na quantificação de doenças. Comparada com a avaliação sem escala, o uso da escala proporcionou melhor precisão e acurácia tanto para avaliadores experientes como inexperientes, quando considerada a estimativa média dos mesmos. Na maioria dos casos, os desvios entre estimativas e severidade atual da doença foram mais evidentes para os níveis de severidade entre 5 e 15%. A reprodutibilidade das avaliações resultou em valores de R 2 mais uniformes para a maioria dos avaliadores experientes. Diferenças consideráveis de precisão foram observadas entre avaliadores inexperientes. O efeito da temperatura (10 o C – 40 o C) e da duração do molhamento (4 – 48 h) na formação de apressórios formados a partir de conídios de G. citricarpa (P. citricarpa) foi avaliado sob condições "in vitro" e sobre a superfície de folhas de limão 'Siciliano'. A formação de apressórios ocorreu em todas as temperaturas a partir de 12 horas de molhamento, sendo os extremos de temperatura (10 o C e 40 o C) menos favoráveis à formação de apressórios. A temperatura mínima para formação de apressórios, estimada pela função beta generalizada foi de 3 o C e a máxima de 48,4 o C, ambas para 48 horas de molhamento. A formação de apressórios foi consideravelmente favorecida pela duração do período de molhamento, com o máximo de apressórios formados a 24 horas de molhamento, para a maioria das temperaturas. O período de molhamento constituído de 48 horas foi essencial para que os esporos submetidos a temperaturas de 10 o C e 40 o C, formassem apressórios. A superfície de resposta obtida pela multiplicação das funções beta generalizada e monomolecular apresentou um ajuste satisfatório para os dados observados na estimativa da porcentagem relativa de apressórios formados (R 2 =0,75). As amostras observadas em microscopia eletrônica de varredura possibilitaram a aquisição de imagens de conídios e apressórios sobre a superfície de folhas de limão 'Siciliano' em todas as combinações de temperatura e molhamento avaliadas. / Citrus black spot caused by Guignardia citricarpa Kiely [Phyllosticta citricarpa (McAlp.) van der Aa] presents two infection forms, conidia and ascospores. Information regarding the importance of the conidia in the epidemiology of the disease is scarce and controversial. Seeking a better understanding on the pathosystem citrus-G. citricarpa (P. citricarpa), the objectives of this dissertation were: elaborate and validate a diagrammatic scale for assessments of the citrus black spot; verify the effect of the temperature and of the wetness duration in the appressorium formation; observe through scanning electron microscopy the germination and formation of appressorium on outstanding lemon 'Siciliano' leaves submitted to different temperatures and wetness duration. The diagrammatic scale with severity levels of 1; 3; 6; 12; and 24% of diseased leaf area was validated by two groups of raters, with experience and without experience in the quantification of diseases. The scale provided better precision and accuracy for both experienced and inexperienced raters, considering the estimates average of them. In the majority of cases, the bias between estimated and actual disease severity were more evident for disease severity levels between 5 and 15%. The reproducibility of assessments resulted in R 2 with more uniforms values for the majority of the experienced raters, considerable differences of precision were observed among inexperienced raters. The effect of the temperature (10 o C - 40 o C) and of the wetness duration (4 – 48 h) in the germination of conidia and appressoria formation of G. citricarpa (P. citricarpa), was assessed "in vitro" and on the surface of lemon 'Siciliano' leaves. The appressoria formation occurred in all the temperatures starting from 12 hours of wetness. The extreme temperatures (10 o C and 40 o C) were less favorable to the apressorium formation. The minimum temperature for appressorium formation, estimated by generalized beta function was of 3 o C and the maximum of 48,4 o C, both for 48 hours of wetness. The appressorium formation was favored considerably by the wetness duration period, with the maximum of apressoria formed at 24 hours of wetness, for majority of the temperatures. The wetness duration period constituted of 48 hours was essential so that the spores submitted to temperatures of 10 o C and 40 o C, formed appressorium. The response surface obtained by the multiplication of the generalized beta and monomolecular functions provided a close fit to observed data in the estimate of the relative percentage of formed appressorium (R 2 =0,75). The samples observed in scanning electron microscopy made possible the acquisition of images of conidia and appressoria on the surface of lemon 'Siciliano' leaves in all the temperature combinations and wetness evaluated.

La recherche d’une agriculture durable et respectueuse de l’environnement passe par une réduction de l’usage d’intrants de synthèse. L’agroécologie cherche à utiliser les interactions entre les organismes de l’agroécosystème pour optimiser son fonctionnement, comme la régulation naturelle des bioagresseurs. C’est dans cette optique que s’inscrit ce travail de thèse qui étudie l’effet de la fertilisation des cultures sur les épidémies de pathogènes foliaires fongiques des cultures. De plus, nous étudions l’évolution des pathogènes face à des scénarios de fertilisation. Cela questionne la durabilité des pratiques culturales qui participent à la régulation les épidémies. Pour répondre à ces questions, nous avons adopté une démarche de modélisation qui permet de simuler l’effet de différents scénarios de fertilisation. Le point de départ et l’originalité de notre démarche a été de considérer le système hôte-pathogène comme un système ressource-consommateur et d’y appliquer des concepts de l'écologie évolutive pour répondre à ces questions agronomiques. Dans les deux modèles construits durant cette thèse, la fertilisation influence directement la quantité de ressources disponible pour le pathogène. Nous nous y concentrons sur un trait d'histoire de vie du pathogène, la période de latence (durée séparant l'infection du début de la sporulation), qui correspond à la durée minimale d'un cycle infectieux et qui, conditionne la stratégie d'allocation des ressources du pathogène. La latence détermine en effet la quantité de ressource qui sera allouée à la croissance du mycélium (donc sa taille à maturité) et celle qui sera ensuite allouée à la sporulation (en relation avec sa taille). Les modèles développés permettent d'étudier les réponses épidémiologique et évolutive des pathogènes foliaires fongiques à la fertilisation des cultures, avec comme référence le système Blé d'hiver/Rouille brune. Nous avons considéré différentes échelles dans ce travail : depuis la lésion où le pathogène se nourrit directement sur son hôte, jusqu’à la parcelle où se développent les épidémies et au paysage où les flux de spores entre les parcelles sont source d’extension des épidémies dans l’agroécosystème. Un premier modèle, à l'intersection des modèles épidémiologiques "SEIR" et des modèles de populations structurées, couvre les échelles de la lésion à celles de l’épidémie et de la parcelle. Le second modèle, à l'intersection des modèles SEIR et des modèles spatiaux d'épidémiologie du paysage, couvre les échelles de la parcelle au paysage agricole. Nous étudions les dynamiques épidémiologiques et évolutives, en comparant des concepts de fitness empiriques et d’invasion. Nous montrons que la fertilisation des cultures, en déterminant la dynamique des ressources disponibles pour les pathogènes, impacte fortement les épidémies. Nos modèles prédisent que la latence des pathogènes évolue en réponse à des compromis écologiques variés, d’une part pour optimiser l’allocation des ressources au niveau des feuilles, mais également pour gagner la course face à la croissance du couvert. La fertilisation, en changeant les concentrations de métabolites foliaires et les dynamiques de croissance du couvert, impacte donc épidémies et réponses évolutives de la latence des pathogènes. A l’échelle du paysage, l’introduction de pratiques variées de fertilisation dans un paysage préalablement homogène pourrait permettre de réduire les épidémies. Cependant, notre modèle prédit une durée limitée de cet effet du fait de l’évolution et de la diversification des pathogènes dans un paysage hétérogène. Ce travail ouvre la voie à des travaux sur l’effet et la durabilité des pratiques pour réguler les épidémies dans l’agroécosystème. Enfin, nous montrons par un travail de méta-analyse qu’il existe une relation forte entre type trophique et latence du pathogène, suggérant que les différents types de pathogènes répondront différemment à des scénarios de réduction de fertilisation / The quest for a sustainable agriculture requires a reduction in the use of synthetic inputs. In this perspective, agroecology seeks to use interactions between organisms in the agroecosystem to replace inputs by ecosystem services, such as the natural regulation of pests and diseases. In this context, this thesis studies the effect of crop fertilization on epidemics of crop fungal foliar pathogens. We also take into account the evolution of these pathogens in response to fertilization scenarios. This allows us to study the sustainability of agricultural practices that contribute to the regulation of epidemics. To answer these questions, we adopted a modelling approach that simulates the effect of different fertilization scenarios. The starting point and originality of our approach was to consider the pathosystem as a consumer-resource system and to use concepts of evolutionary ecology to answer the abovementioned agronomic questions. In the two models developed in this thesis, fertilization directly determines the quantity of resources available for the pathogen. We focus on one of the pathogen's life history traits, the latent period (time period between infection and the onset of sporulating lesions), which corresponds to the minimum duration of an infectious cycle and constrains the pathogen's resource allocation strategy. The latent period determines the amount of resource that will be allocated to either growth of mycelium (and therefore to pathogen size at maturity) or to sporulation (proportional to the pathogen’s size). The models we developed make it possible to study the epidemiological and evolutionary responses of fungal foliar pathogens to crop fertilization. We parameterized our models according to our biological knowledge of the wheat-rust pathosystem. Our modelling work encompasses different spatial and temporal scales: from the lesion where the pathogen feeds directly on its host, to the field and the landscape where the spores that flow between fields are the source of epidemics in the agroecosystem. The first model, at the intersection of the "SEIR" epidemiological models and structured population models, covers the scales of a lesion, the crop canopy and the field. The second model, at the intersection of SEIR and spatial landscape epidemiology models, covers the scales of the field and the agricultural landscape. We study epidemiological and evolutionary dynamics of pathogen populations by comparing empirical and invasion fitness concepts. We show that crop fertilization, by determining the dynamics of available resources for pathogens, has a strong impact on foliar fungal epidemics. Our models predict that pathogen latent period evolves in response to various ecological trade-offs; on the one hand to optimize resources allocation at the leaf scale, on the other hand to win the race against canopy growth. By changing the leaf metabolite content and the rate of canopy growth, fertilization therefore impacts both epidemics and evolutionary responses of pathogen latent period. At the landscape scale, the introduction of various fertilization practices in a previously homogeneous landscape could help to partially regulate epidemics. However, our model predicts that the beneficial effects of heterogeneity will vanish due to the evolution and diversification of pathogens in heterogeneous landscapes. This work sets the stage for further work on the effect and sustainability of agricultural practices on the regulation of crop epidemics in agroecosystems. Finally, by performing a meta-analysis, we bring out a strong relation between pathogen trophic type and latent period, suggesting that different trophic types of pathogens will respond differently to decreasing fertilization scenarios

Indiana University-Purdue University Indianapolis (IUPUI) / Candida albicans and Candida glabrata are opportunistic human pathogens that are the leading cause of fungal infections, which are increasingly becoming the leading cause of sepsis in immunosuppressed individuals. C. glabrata in particular has become a significant concern due to the increase in clinical isolates that demonstrate resistance to triazole antifungal drugs, the most prevalent treatment for such infections. Triazole drugs target the ERG11 gene product and prevent C-14 demethylation of the first sterol intermediate, lanosterol, preventing the production of the pathways end product ergosterol. Ergosterol is required by yeast for cell membrane fluidity and cell signaling. Furthermore, C. glabrata, and not C. albicans, has been reported to utilize cholesterol as a supplement for growth. Although drug resistance is known to be caused by an increase in expression of drug efflux pumps, we hypothesize a second mechanism: that the overuse of triazole drugs has lead to the increase of resistance by C. glabrata through a 2-step process: 1) the accumulation of ergosterol auxotrophic mutations and 2) mutants able to take up exogenous cholesterol anaerobically in the body acquire a second mutation allowing uptake of cholesterol aerobically. Two groups of sterol auxotrophic C. glabrata clinical isolates have been reported to take up sterol aerobically but do not produce a sterol precursor. Sterol auxotrophs have been created in C. glabrata by disrupting different essential genes (ERG1, ERG7, ERG11, ERG25, and ERG27) in the ergosterol pathway to assess which ergosterol mutants will take up sterols aerobically. Random and site-directed mutagenesis was also completed in ERG25 of Saccharmoyces cerevisiae. The ERG25 gene encodes a sterol C-4 methyloxidase essential for sterol biosynthesis in plants, animals, and yeast. This gene functions in turn with ERG26, a sterol C-3 dehydrogenase, and ERG27, a sterol C-3 keto reductase, to remove two methyl groups at the C-4 position on the sterol A ring. In S. cerevisiae, ERG25 has four putative histidine clusters, which bind non-heme iron and a C-terminal KKXX motif, which is a Golgi to ER retrieval motif. We have conducted site-directed and random mutagenesis in the S. cerevisiae wild-type strain SCY876. Site-Directed mutagenesis focused on the four histidine clusters, the KKXX C-terminal motif and other conserved amino acids among various plant, animal, and fungal species. Random mutagenesis was completed with a procedure known as gap repair and was used in an effort to find novel changes in enzyme function outside of the parameters utilized for site-directed mutagenesis. The four putative histidine clusters are expected to be essential for gene function by acting as non-heme iron binding ligands bringing in the oxygen required for the oxidation-reduction in the C-4 demethylation reaction.