Efforts to mitigate shoreline erosion through living shoreline methods along the USA Atlantic seaboard have often incorporated the cultivation and transplantation of smooth cordgrass, Spartina alterniflora. Assessments of these transplants at several sites in the Indian River Lagoon have shown that survival is variable after a year (survival: 10-93%). Lower survival has been attributed to environmental variables such as dislodgement by wave energy, and transplant shock due to salinity changes from cultivation to estuarine conditions. To improve living shoreline projects, we examined the effects of cultivation salinity (0 ppt, 15ppt) on transplantation success, and the success of anchoring plants to biodegradable mats (Jute mesh, 5 individuals per 50 cm2) and utilizing oyster bags as breakwaters in facilitating reestablishment of new transplants. Spartina alterniflora individuals were grown under salinity treatments for 20 weeks; plants grown in 15 ppt produced new shoots with significantly greater heights than those grown in freshwater. The plants were then transplanted to two sites in the IRL, and monitored after four weeks. After four weeks there was a greater net increase in stem density and larger decrease in plant height for plants grown in 15 ppt. Jute-mesh mats and oyster bags did not impact growth or survival of transplants. Low-saline (15 ppt) conditions increased shoot growth of the project by 50% in four weeks at a cost of 30 cents per additional shoot produced by an individual. Longer-term monitoring will determine if benefits persist or decrease over time, and if the cost is justified by the benefits.

Oyster reefs are important estuarine ecosystems that provide habitat to many species including threatened and endangered wading birds and commercially important fishes and crabs. Infaunal organisms (i.e. small, aquatic animals that burrow in the sediment) are also supported by oyster reef habitats. Infaunal organisms are critical to marine food webs and are consumed by many important species that inhabit coastal estuaries. However, over the past century 85% of shellfish reef habitats have been lost, making restoration of these areas vital. Due to their important role in coastal food webs, infauna is hypothesized to be a strong indicator of habitat productivity to document the transition from a dead to a restored and living intertidal oyster reef. Research was conducted in Mosquito Lagoon of the northern Indian River Lagoon system. Three replicate samples were collected from 12 intertidal oyster reefs (four dead, four live, four restored). Samples were collected one-week pre-restoration and one month and six months post-restoration. Infauna was counted and sorted into six taxonomic categories: polychaetes, amphipods, isopods, gastropods, bivalves, and decapods. Reef infaunal abundance increased following restoration: restored reefs became more similar to live reefs one month following restoration. Six months after restoration restored reefs were also significantly different than dead reefs. Live reefs consistently had high infaunal abundance and dead reefs consistently had low abundance, while restored reefs were intermediate. These data suggest restored reefs are more productive than their dead counterparts, with restoration showing a positive trajectory to impact numerous infaunal species and their associated food webs.

The State of Mississippi wants to manage its oyster resource to increase production, quality, ecological, and economic benefits. In this study, we employ modern portfolio theory (MPT) to test if there are potential gains to hold multiple oyster resources for multiple benefits to aid the state's effort in achieving its goal. Using a Delphi approach, we elicit complete sets of data on ecosystem services (on oxygen, nutrients, sedimentation, and salinity) across multiple oyster resources (traditional plantings, off-bottom farms, and restored reefs). A benefit transfer method is used later to assigned money-metric value to each service estimate. The multiple service values are then aggregated into net service value. We compute the means, standard deviations, and correlations of benefits across all resources using the net service values, and generate efficient frontiers from that information. Results indicate that Mississippi could benefit from holding multiple oyster resources while focusing more on off-bottom oyster farms.

<p>Adhesives  are  found  in  almost  every  aspect  of  the  modern  world.  They  are  found  in plywood used in buildings, electronics, shoes, plumbing and in almost every facet of your daily life. Nature also has an abundance of these adhesives that are used fora multitude of applications. Some  animals, like  the  blue  mussel, use  their  adhesive  for  protection  against  ocean  waves  and predators  while other animals, such  as  the  spider, use  it  to  trap  prey. Investigation  of  theses adhesives has led to the identification of several different proteins that allow for these animals to make  their  adhesive.  Some  of  them  are  composed of rare  amino  acids that  while  other  animals use  a combination  of  inorganic  and  organic  components.  Understanding  of  these  unique adhesives  can be  a  boon  for designof future  adhesives  that  do  not  have  the disadvantagesof current day commercialized glues.</p> <p>Increasing interest  in  the  restoration  of  natural  oyster  reefs  and  the  cement  that  holds them  together  has  resulted  in  the  identification  of  the  Shelk2  protein  that  is  found  both  in  the mantle  of  the  oyster’s  shell  as  well  as  the  cement  that  holds  the  reefs  together. Gaining  an understanding  of  how  this  protein  functions  and  its  part  in  the  oyster  reef  could  be  quite beneficial  for  projects  investing  in  reef  restorations  as  well  as  underwater  adhesion.  Gathering protein  from  the  animal  for  experimentation  and  characterization  can  be  labor  intensive  and extremely challenging. Luckily, cloning technology has become a useful tool for the expression of large quantities of proteins that can be difficult or impossible to gather from the native animal. Using <em>E. coli</em>, it  is  possible  to design  and express  this protein  in  hopes  of  gaining  a  better understanding of its impact on oyster settlement and adhesion.</p> <p>Sustainability is a major downside to current day adhesives that current technologies have not  been  able  to  solve. Most adhesives  that  are  on  the  market  today  are  primarily  derived  from petroleum. Current  research  has  begun  investigating  alternatives  to  the  large   epoxy   and formaldehyde  adhesive  market,  but  the  barrier  of  entry  is  hard  to  overcome.  To  replace  these glues  the  new  material  must  be  affordable,  non-petroleum  derived,  and  available  on  a  massive scale.  These  requirements  are  hard  to  meet  for  many  materials  and  due  to  that  the  current  bio-adhesive are generally very low strength.</p> <p>The work presented here will detail the characterization, and expression of some of these natural  adhesives that  have  been  found  in  the  Eastern  oyster. Another  aspect of  this  work includes the synthesis of a new bio-based adhesive system. Utilizing biomimetic chemistry along with  sustainably  sourced  materials  a  new  adhesive  has  been  formulated that  has  comparable adhesive strength to current day commercial adhesives.</p>

Rice is a staple crop for many countries around the world, and is one of the top three food sources globally. Many environments where rice is grown contain stressors likely to limit its growth and yield. In southern Senegal (Casamance region), rice is mainly cultivated in lowlands near estuaries where drought, salinity, acidity, poor soil fertility, and iron toxicity are the main limiting factors. In Casamance, average rice yield for local farmers is 1 to 2 tons per hectare (809 to 1618 pounds per acre), compared to worldwide average yield of more than 4 tons per hectare. The soil where our 2-year experiment (2014 and 2015) was conducted is highly saline-sodic and acidic, and the salt tolerant cultivar we grew yielded 3.4 tons per hectare in 2013. Our main objective was to increase rice yield. The water table height, salinity, and pH were measured weekly during the rice growing season, and the soil was described, sampled, and analyzed to better understand the water and soil resources. Two planting methods were tested: flat planting and planting on beds. Two soil amendments were compared with each planting method: biochar and crushed oyster shells, alone and in combination. An untreated control was included in the experiment. All plots were fertilized. Treatment effects on soil properties and yield were compared in a split-plot design. Plant tissue was sampled for elemental content. The water table was above the surface and was saline during half of the growing season in 2014, and decreased after rice grain head emerged. Planting methods and amendments did not have an effect on yield in 2014, but biochar amendment increased yield in 2015. In 2014, soil salinity and sodium decreased to below toxic levels late in the growing season in the flat plots but not in the bedded plots. Therefore, flat planting is more appropriate in these lowland rice production systems. Soil pH increased from 4.4 to 7.7 in flat planting where biochar+shell was applied. Soil available nutrients such as P, Mn, and Zn were significantly higher in flat planting compared to beds. Toxic levels of Na (> 2000 milligrams per kilogram) were measured in leaves sampled just before flowering. We recommend flat planting and amending soil with biochar in saline-sodic acid-sulfate paddy soils in Casamance to improve rice yield. / Master of Science

One of the primary concerns of science studies scholars is the translation and utilization of theory in practice. In this thesis, I address this concern as it applies to theories of environmental ethics by analyzing the present use in and the applicability of Green philosophy to a current environmental public policy debate. Namely, through a history and analysis of the debate over the proposed introduction of a foreign species of oyster to the Chesapeake Bay, show that the Green perspective can, if adopted, be a valuable aid to solving current environmental problems. / Master of Science

Casamance is a region in southern Senegal that traditionally produces rainfed rice, but Senegal produces only 1/3 of its rice consumption. Lowland areas, where rice is primarily produced, have acid sulfate soils with low pH and potential aluminum and iron toxicity. The goal of this work was to determine if soil amendments can alleviate soil acidity, counteract the negative biogeochemical effects that occur in flooded conditions, and increase rice yield. A two-year experiment was conducted to test the following soil treatments – agricultural lime, pulverized oyster shell, biochar, and control (no amendment) – in flat and raised beds. Plots amended with lime and shell materials had increased soil pH, base saturation, Ca, and cation exchange capacity. Meanwhile, biochar elevated particulate organic matter and C:N ratios. Exchangeable Fe and Al were negatively correlated with soil pH, while Geobacteraceae populations (Fe reducing bacteria) increased with pH. A greater proportion of the total Fe was strongly bound in fractions that were less bioavailable in plots amended with shell or lime, and overall rice yields were significantly higher following amendment with shell or lime. During the second growing year these effects diminished, suggesting that liming effects did not persist as expected. These results demonstrate the benefits of soil amendments that raise soil pH and suggest that this effect operates by influencing overall soil nutrient availability to rice plants, but further research is needed regarding the timing and sustainability of the beneficial liming effect. / Master of Science

Live eastern oyster (Crassostrea virginica) reefs have declined by 62.6% in Mosquito Lagoon (ML) along the eastern Florida coast since 1943. While this species creates reefs by successive generations of oysters recruiting to conspecific shells, C. virginica can also attach to non-reef substrates including mangrove roots and armoring (e.g., seawalls), which may help counteract reef habitat loss. In recent decades, warmer winters have enabled red (Rhizophora mangle) and black (Avicennia germinans) mangrove expansion in subtropical salt marshes and temperate estuaries where oyster reefs occur. Additionally, 11.8% of ML's shorelines have been armored as of 2018. These non-reef substrates add potential surface area and a 3-D substrate for oyster settlement. Aerial imagery from 1984 to 2021 was used to track extent (ha) changes in mangroves, oyster reefs, and hard armoring. Mangrove extent increased 859.2%, hard-armoring extent decreased 56.3%, and live oyster reef area decreased 55.3% (rate: -0.86 ha/yr). Additionally, 83 oyster reefs were 100% converted into mangrove islands, resulting in a 654.6% increase in the number of new conversions between 1984 and 2021. To determine if oyster abundances on non-reef substrates are comparable to live oyster reefs, oyster characteristics were compared between substrate types using field surveys to collect metrics (live densities, shell heights, canopy heights). Mean densities and canopy heights (± S.E.) were highest on concrete/metal seawalls (481.8 ± 113.0 oysters m2 and 678.4 ± 408.6 mm, respectively). Mean shell heights (± S.E.) were largest on oyster reefs (52.0 ± 2.2 mm) and within black mangrove pneumatophores on oyster reefs (41.3 ± 10.0 mm). Between 1984 and 2021, oyster reefs lost 291.0 oysters/ha versus non-reef habitats, which added an average (± S.E.) of 104.7 ± 78.2 oysters/ha. These findings suggest mangrove roots and armoring support oyster reef-level populations by providing 3-D attachment space and partially offset oyster losses on reefs.

Oyster reefs support diverse estuarine communities and food webs. Factors controlling oyster reef community development were studied on restored reefs in the St. Lucie Estuary. Freshwater discharges create stresses that cause oyster mortality, habitat loss and reduction in reef community diversity. Using structural equation modeling, it was demonstrated that salinity, turbidity, and chlorophyll-a gradients influence oysters and some reef invertebrate species, but did not support the predictions of the Intermediate Disturbance Hypothesis. In contrast, diversity and species richness were greatest at low stress sites. A field experiment showed that topographic relief and architectural complexity enhanced colonization and growth of reef-building species (e.g.oysters and mussels). The relief by complexity interaction had a higher order, synergistic effect on oyster abundance. When considered separately, increasing relief further enhanced dominant sessile taxa (cirripeds and ascideans) ; while, increasing complexity supported greater species richness and the abundance of cirripeds. / by Elizabeth A. Salewski. / Thesis (M.S.)--Florida Atlantic University, 2012. / Includes bibliography. / Mode of access: World Wide Web. / System requirements: Adobe Reader.

<p>Curiosity is a powerful tool, and combined with the ability to observe the natural world, grants humankind an unique opportunity, the opportunity to wonder why. Why do things exist?, why do they do the things they do?, why is this even possible?</p> <p>Research in our lab is focused on the basic understanding and potential application of biological materials, in particular, biological adhesives produced by marine organisms such as oysters. Oysters produce a cement-like material that is able to withstand the dynamic conditions found in coastal environments. The focus of this dissertation is to lay the basis of the characterization of new biological materials by observing and analyzing its physical properties, to measure the performance of the material in natural conditions and finally to identify the basic components that give the material the properties that we observe. The end goal of this project is to understand the properties of this material so we are able to develop a synthetic system that is able to imitate, as close as possible, what we find in nature. These results, and more importantly, the new questions that emerge from this research, provide a first look at the adhesive system of oysters leading the way to new discoveries in the future.</p>