Targeting oncogene promoters: a novel heterocyclic cations as G-quadruplex stabilizing ligands Lenka Pohlová Abstract: The diploma thesis studies an effect of newly synthesized group of compounds - helquats - on the expression of c-myc as a major player in malignant transformation and tumorigenesis via the stabilization of G-quadruplex in c-myc promotor. The G-quadruplex c-myc stabilization ability was tested for 101 helquats using dual luciferase reporter assay. The G-quadruplex c-myc stabilization ability was found for 13 helquats by this method. 8 successful helquats was selected by a comparison of the results from dual luciferase reporter assay and FRET melting assay. Effect on cell viability of tumor (HeLa S3) and non-tumor (HUVEC) cell lines was evaluated for these 8 helquats. Three of them exhibited cytotoxic effect on tumor cells but no effect was observed on viability of non-tumor cells. Moreover, an effect of these 3 helquats on c-myc expression on both mRNA and protein level, where significant effect on c-myc mRNA expression was not found for most of incubation periods. The 30% decrease in mRNA level was observed only for 24 hours incubation period for two helquats (LS702 and MJ656). The decrease in the expression on protein level was observed for all tested helquats, and helquat LS702 had the...

Le procès pénal français repose sur l’idée que le monopole dans la conduite des investigations revient aux agents de l’autorité publique. Pourtant, ce constat devient de moins en moins exact. De multiples facteurs tendent à contester aux enquêteurs officiels l’apanage de l’enquête pénale. Qu’ils soient détectives privés, journalistes d’investigation, ou encore de simples citoyens impliqués dans la mise en œuvre de la loi pénale, de nombreux particuliers procèdent à des actes d’enquête susceptibles d’informer le juge dans le cadre d’un procès. Cette progression de l’enquête pénale privée mérite d’être analysée, en ce qu’elle fait peser sur la justice pénale de nombreux risques en termes de légitimité, de légalité, et d’égalité de tous devant la loi. Pour mieux traiter l’ensemble de ces problématiques, une comparaison avec le droit des États-Unis, terre d’élection des investigations privées, s’avère particulièrement opportune. / The criminal proceedings is built around the idea that the monopoly for conducting investigations is held by representatives of the public authorities. However, this observation is becoming less and less true. Multiple factors contribute to disputing this specific prerogative of the criminal proceedings to the official investigators. Be they private detectives, investigative reporters, or even ordinary citizens involved in the implementation of the criminal law, many individuals operate investigative acts that may inform the sentencing judge during a trial. This increase of the private criminal investigation deserves to be further analyzed as it implies several risks to the criminal justice in terms of legitimacy, legality and equality before the law. To better handle these problematics, a comparison with the US Law, land of private investigations, seemed obvious.

Transmissible spongiform encephalopathies (TSEs) or prion diseases are a class of fatal brain disorders better known as Creutzfeldt-Jacob Disease (CJD) in humans, bovine spongiform encephalopathy (BSE) in cattle, scrapie in sheep, and chronic wasting disease (CWD) in deer and elk. The infectious agent responsible for these diseases is a misfolded prion protein capable of catalyzing a conformational change in normal cellular prion proteins (PrPC) into aberrant disease-causing structural isoforms (PrPSc). Although the etiological agent for TSEs has clearly been defined as PrPSc, there are important gaps in our understanding of how these proteins target and invade brain tissue. It remains to be established how ingested PrPSc ultimately reach the brain and also to understand why these tissues are particularly targeted, notwithstanding that several other tissues highly express prion proteins. Certain viruses, retroviruses in particular, efficiently hijack host proteins and can carry these proteins with them when they are released from a cell. Several lines of evidence have shown that prions and retroviruses can interact and associate at various stages of the retroviral replication cycle. Of special interest is that most retroviruses can cross the blood-brain barrier and could therefore deliver host-derived proteins to neuronal cells. In view of these observations, this thesis investigates whether retroviruses can act as vectors to capture prions from an infected cell and deliver them to a susceptible target cell. In this work, I have cloned human and mouse prion cDNAs from PBMCs and the murine cell line NIH 3T3. Either a FLAG epitope tag or the eGFP reporter protein cDNA was inserted into a region of the prion cDNA that is predicted to be amenable to such genetic insertions without affecting protein folding or expression. I then confirmed using both fluorescent and confocal microscopy and that the recombinant proteins had a similar cell distribution to the endogenous prion protein. Using Western blot analysis, I then showed that endogenous and overexpressed prion proteins can be detected in co-transfected cells producing HIV and murine leukemia virus (MLV) retroviral particles. Finally, I went on to show that prions are also present at high levels in HIV and MLV retroviral particles released from these cells. This work constitutes the first step in determining whether retroviruses can act as vectors for prion dissemination. Establishing a strong and clear association between retroviruses, pathogenic prions and prion disease would provide the rationale for preventive measures to be taken directly against retroviruses in order to protect humans and animals that have been newly exposed to PrPSc-infected products or those who are genetically predisposed to develop prion diseases. Anti-retroviral drugs could also be potentially used to delay disease progression and reduce prion transmission in human and animal tissues. The availability of such a treatment would constitute a significant advancement because there is currently no cure or treatment for prion diseases.

La régulation des gènes est à l’origine de la diversité cellulaire en permettant aux cellules de se différencier et de se spécialiser. La régulation génique repose largement sur l’existence de séquences d’ADN non codantes dans le génome, appelées "éléments cis-régulateurs", qui vont permettre de recruter de nombreux facteurs de transcription afin de former d’importants complexes (nucléo)protéiques qui vont agir sur le niveau de transcription des gènes. Ce recrutement est notamment contrôlé par des modifications épigénétiques. Le développement des techniques de séquençage et des méthodes d’analyse bioinformatiques permettent d’intégrer de grandes quantités de données pour étudier le fonctionnement des éléments régulateurs. Dans un premier temps, l’intégration de l’ensemble des données ChIP-seq disponibles dans les bases de données nous a permis de créer un catalogue d’éléments régulateurs putatifs chez l’Homme. L’analyse de ce catalogue nous a alors mené à caractériser ces éléments et à mettre en évidence la complexité combinatoire des facteurs de transcription. Dans un deuxième temps, nous avons réalisé une étude basée sur l’analyse des éléments régulateurs impliqués dans la différenciation précoce des lymphocytes T chez la souris. Cette étude a permis de mettre en évidence deux niveaux de complexité impliqués dans la régulation des gènes : le premier est basé sur la combinatoire des facteurs de transcription au sein des éléments régulateurs et le second repose sur la combinatoire des éléments eux-mêmes. Finalement, nous avons développé une nouvelle technique d’analyse quantitative et à haut débit de l’activité régulatrice de régions génomiques chez les mammifères. / Gene regulation is responsible for cell diversity by allowing cell differentiation and specialisation. Gene expression regulation relies mainly on the existence of non-coding DNA sequences in the genome, called "cis-regulatory elements", which recruit numerous transcription factors to form (nucleo)protein complexes which act on the gene transcription level. This recruitment is controlled in particular by epigenetic modifications. The rapid development of sequencing technologies and bioinformatics methods makes possible the integration of large amounts of data to study regulatory elements. First, the integration of ChIP-seq data for all transcription factors available in public databases has allowed us to create an extensive catalogue of putative regulatory elements in the human genome. The overall analysis of this catalogue led us to further characterize these elements and to highlight the high level of combinatorial complexity of transcription factors in the genome. Secondly, we conducted a more specific study based on the analysis of the regulatory elements involved in the early differentiation of T-cells in mice. This study provided an opportunity to highlight two levels of complexity based on regulatory elements and involved in gene regulation: the first rests on the transcription factor combinatorial in regulatory elements and the second is based on the combinatorial of elements themselves within loci. Finally, to validate experimentally the regulatory elements, we have developed a new quantitative and high-throughput technique to assess the regulatory activity of genomic regions in mammals.

In order to maintain a multicellular organism cells need to interact and communicate with each other. Signalling cascades such as the Bone Morphogenic Protein (BMP) and Hedgehog (Hh) signalling pathways therefore play essential roles in development and disease. Intercellular signalling also underlies the function of stem cell niches, signalling microenvironments that regulate behaviour of associated stem cells. Range and intensity of the niche signal controls stem cell proliferation and differentation and must therefore be strictly regulated. The testis and ovary of the fruit fly Drosophila melanogaster are established models of stem cell niche biology. In the apical tip of the testis, germ line stem cell (GSCs) and somatic cyst stem cells (CySCs) are arranged around a group of postmitotic somatic cells termed hub. While it is clear which signals regulate GSC maintenance it is unclear how these signals are spatially regulated. Here I show that BMP signalling is specifically activated at the interface of niche and stem cells. This local activation is possible because the transport of signalling and adhesion molecules is coupled and directed towards contact sites between niche and stem cells. I further show that the generation of the BMP signal in the wing disc follows the same mechanism. Hh signalling controls somatic stem cell populations in the Drosophila ovary and the mammalian testis. However, it was unknown what role Hh might play in the fly testis, where the components of this signalling cascade are also expressed. Here I show that overactivation of Hh signalling leads to an increased proliferation and an expansion of the cyst stem cell compartment. Finally, while the major components of the Hh signalling pathway are known, detailed knowledge of how signal transduction is implemented at the cell biological level is still lacking. Here, I show that localisation of the key signal transducer Smo to the plasma membrane is sufficient for phosphorylation of its cytoplasmic tail and downstream pathway activation. Using advanced, microscopy based biophysical methods I further demonstrate that Smo clustering is, in contrast to the textbook model, independent of phosphorylation.:Summary 1 List of publications 3 1 Introduction 9 Aims of the thesis 15 2 Generation of a local BMP signal in testis and wing disc 17 2.1 Introduction . . . . . . . . . . . . . . . . . . . . . . . . . . . . 19 2.1.1 Stem cells and stem cell niches . . . . . . . . . . . . . . 19 2.1.2 The Drosophila testis stem cell niche . . . . . . . . . . 20 2.1.3 BMP signalling in the fly . . . . . . . . . . . . . . . . . 23 2.2 Results . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 25 2.2.1 The BMP niche signal is transduced locally at adherens junctions 25 2.2.2 Generation of the local BMP niche signal . . . . . . . . 30 2.2.3 Exocyst involvement in long-range BMP signalling . . 34 2.3 Discussion . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 37 3 Hedgehog pathway overactivation in the testicular niche 41 3.1 Introduction . . . . . . . . . . . . . . . . . . . . . . . . . . . . 43 3.1.1 The role of Hedgehog in the fly . . . . . . . . . . . . . 43 3.2 Results . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 45 3.2.1 Overexpression of Hh increases the CySC number and expands their range 45 3.3 Discussion . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 47 4 Visualization of Smo phosphorylation and biophysical detection of Smo clustering 49 4.1 Introduction (part I) . . . . . . . . . . . . . . . . . . . . . . . 51 4.1.1 Hedgehog signalling in the fly . . . . . . . . . . . . . . 51 4.1.2 Reception and transduction of the Hh signal by Ptc and Smo 54 4.2 Results (part I) . . . . . . . . . . . . . . . . . . . . . . . . . . 56 4.2.1 A fluorescent reporter for Drosophila Smo tail phosphorylation 56 4.2.2 Smo phosphorylation and localisation in the salivary gland 61 4.2.3 Smo localisation in cultured insect cells . . . . . . . . . 63 4.2.4 Smo membrane localisation and phosphorylation . . . . 65 4.3 Introduction (part II) . . . . . . . . . . . . . . . . . . . . . . . 67 4.3.1 Fluorescence correlation spectroscopy (FCS) . . . . . . 67 4.3.2 Dual-color fluorescence cross-correlation spectroscopy (FCCS) 72 4.3.3 Artefacts in FCS/FCCS . . . . . . . . . . . . . . . . . 73 4.4 Results (part II) . . . . . . . . . . . . . . . . . . . . . . . . . . 79 4.4.1 Smo clustering measured by FCCS . . . . . . . . . . . 79 4.5 Discussion . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 82

The main aim of this work is to describe the history and development of Czech Television's regional news coverage in years from 1992 till 2012, using the testimonies of direct TV staff involved in this reporting beyond the available resources, thereby expanding the amount of information on this issue. To achieve this information, the oral history method was used and the subsequent verification of the information obtained was done using the literature, diploma theses, annual reports and other sources in this work specified. The result of this work is the extension and addition of new facts and information about the history of Czech Television's regional news, especially of internal character, not yet obtainable from available professional publications or public reports and data. These include information on the nature of interpersonal relations in regional news, the attempt to influence the outward processing and thematic focus of the editorial offices and the specific technical and structural development of individual regional editorial offices. Key words Czech Television, ČT, CST, narrator, reporter, regional news, regions, Večerník, Události, Události v regionech.

As with women journalists in other male-dominated fields, female music writers have long endured gendered harassment. In the newsroom, this sexist treatment is foisted upon female music journalists by their male editors and colleagues; in the outside world, it often occurs at the hands of male sources, readers, and online trolls. Unfortunately, the victims of such abuse are frequently left to cope with it alone, and many report that their mental health suffers in the process. Some may even ultimately decide to quit pursuing music journalism entirely. These women report wanting to feel more supported within their work environment, as well as through informal means, such as via a network of fellow female writers. Feminist media theory, utilitarianism, and ethics of care will serve as the study's theoretical bases. This research, based on in-depth interviews with women music journalists, suggests that the vast majority of participants had faced sexism and/or gendered harassment during their time as a female music journalist, experiences that left many of them feeling frustrated and devalued. Based on the research, I offer recommendations on how to make the industry more inclusive for women writers.

Food contact materials are materials that are intended to come into contact with food, and we are exposed to different types of chemicals that exist in the packages on a daily basis. In this study, a battery of effect‑based in vitro cellular bioassays was used to evaluate the presence of bioactive compounds in commonly used food contact materials made of paper and cardboard, retrieved from the Swedish market. Sample extracts were tested at concentrations 0.3, 1, 3 and 10 mg food contact material/mL cell culture medium. The use of effect-based bioassays allowed for screening of multiple health-relevant endpoints in a non-targeted approach. Hence, taking unknown substances and mixtures into consideration when addressing potential toxicity of the materials. In essence, detection of bioactivity could be considered as moderate to high in assays of positive effects. Antiandrogenic and antiestrogenic effects were found in 72% of the samples, followed by 47% bioactivity in the Nrf2 assay. No androgenic effect was detected. Usage of effect-based bioassays allows for high sensitivity and low detection limits, and these can be used as a first approach to evaluate package materials to ensure the safety of consumers. / Livsmedelsförpackningar är material som är avsedda att komma i kontakt med livsmedel. Vi exponeras för olika typer av kemikalier som existerar i dessa förpackningar varje dag. I denna studie användes ett batteri av effektbaserade in vitro bioanalytiska metoder för att undersöka förekomst av bioaktiva ämnen i vanligen använda livsmedelsförpackningar tillverkade av papper och kartong, insamlade från den svenska marknaden. Provextrakten testades i koncentrationerna 0.3, 1, 3 och 10 mg livsmedelsförpackning/mL cellmedium. Att använda effektbaserade bioanalyser möjliggör undersökning av flertalet hälsorelevanta effekter genom en icke-riktad strategi. På så sätt tas okända substanser och komplexa blandningar i beaktande. Andelen bioaktiva prover kan anses måttlig till hög för positiva analyser. Antiandrogena och antiöstrogena effekter detekterades i 72% av proverna, följt av 47% bioaktivitet i Nrf2 analysen. Ingen agonistisk androgen effekt observerades. Att använda effektbaserade bioanalyser möjliggör hög sensitivitet och detektion vid låga koncentrationer, därför kan dessa användas som ett första steg för att evaluera förpackningsmaterial för att säkra konsumenternas hälsa.

The mechanism to maintain stem cell properties and to exit into differentiation pathways is a pivotal question in stem cell research. Spermatogonia are the adult stem cells of the male germ line, which are used in biomedical research as a source of undifferentiated cells. The communication between germ line stem cells and specialized somatic cells (Sertoli cells and Leydig cells) plays important roles in stem cell maintenance, germ cell proliferation, and differentiation. With regard to the biology of stem cells and spermatogenesis, the medaka (Oryzias latipes) is used as a teleost model organism, and it is also used to assess the effects of endocrine disruptors on reproductive phenomena. However, the lack of suitable molecular markers hampers the detection, isolation and analysis of different testis cells including gonial stem cells and Leydig cells. Therefore, oct4, sox2 and cyp11b were chosen to create transgenic reporter lines for the labeling of stem cells and Leydig cells, respectively. The present study had the aim to examine the temporal and spatial expression of the respective genes during embryonic development and in adult gonads of the medaka, and to describe the application of these transgenic lines in stem cell biology and reproductive biology. The mCherry expression in transgenic fish of the line FSI-Tg(sox2-mCherry)17 marks embryonic stem cells, Leydig cells and interstitial cells in adult testis. Faithful EGFP and DsRed expression in transgenic reporters strains for oct4 and cyp11b mimics the endogenous expression of oct4/pou2 and cyp11b-protein, respectively. The reporter gene expression in the strains FSI-Tg(oct4-EGFP)9 and FSI-Tg(oct4-EGFP)A allows the visualization of oct4 positive cells during embryonic development, PGCs, early germ cells and adult gonial cells. The Leydig cells express brightly green or red fluorescence in the medaka strains FSI-Tg(cyp11b-EGFP)20 and FSI-Tg(cyp11b-DsRed)1434, respectively, allowing the easy identification of Leydig cells in adult testis. The oct4-EGFP reporter labels medaka embryonic and spermatogonial stem cells, in which the spermatogonial stem cells at the ends of the testicular lobules show brightly green fluorescence. The transgenic expression in stem cells is also shown in the flow plot of primary testis cells. The spermatogonia are the largest cells and have the strongest fluorescence, which decreased upon differentiation. Therefore, the oct4-EGFP reporter strains will provide an opportunity to detect and to isolate the EGFP expressing cells for transplantation. These strains will also facilitate further experiments on the effects of drugs or hypoxia on these cells, because the strongest EGFP expressing cells can be easily detected in transgenic lines. Labeling of Leydig cells in cyp11b reporter lines opens a new area to study the seasonal variation of spermatogenesis. The medaka is a seasonal breeder in its natural habitat and the simulation of seasonal changes allows the simultaneous quantitative analysis of oct4-EGFP and cyp11b-DsRed expressing cells under such conditions.

Le carcinome ovarien est l'une des tumeurs gynécologiques les plus meurtrières dans le monde et particulièrement au Canada. En effet, il s’agit du troisième cancer de l’appareil reproducteur féminin le plus fréquent au Canada, selon la Société Canadienne du Cancer qui estima que sur 3 000 canadiennes ayant été diagnostiquées avec un cancer de l’ovaire en 2022, environ 1 950 ne survivront pas à la maladie. Les traitements de première ligne pour ce cancer comprennent la chirurgie cytoréductive associée à une chimiothérapie à base de platine et de taxane comme l’association des anticancéreux que sont le Carboplatine et Paclitaxel. Nous retrouvons également comme traitement la radiothérapie, et, plus récemment, les inhibiteurs de la poly (ADP-ribose) polymérase (PARPi) comme l'Olaparib qui sont désormais utilisés en première ligne dans ce type de cancer. Ces traitements peuvent entraîner différentes décisions concernant le devenir des cellules, impliquant non seulement la mortalité ou la survie des cellules cancéreuses, mais aussi un arrêt de la prolifération induit par le traitement appelé TIS pour sénescence induite par la thérapie. Alors que les décisions relatives au devenir des cellules sont déterminantes pour l'issue du traitement du cancer, notre capacité à mesurer le devenir des cellules dans le cancer en temps réel est extrêmement limitée. Pour cette raison, il n'existe pas de modèles de cancer de l'ovaire qui puissent fournir un suivi non invasif du devenir des cellules à des moments spécifiques avec des biomarqueurs adaptés, pour décrypter le rôle des différents devenirs cellulaires, ou pour servir de contrôles expérimentaux précis dans les tests précliniques des stratégies d'intervention basées sur le devenir des cellules. Néanmoins, nous avons démontré qu’un fragment du promoteur du gène de la protéine p21, que nous avons nommé p21SEN, n'est exprimé que pendant la sénescence induite par les radiations, la chimiothérapie et les PARPi dans des lignées d’adénocarcinome ovarien à cellules claires (TOV21G). En effet, nous avons généré des lignées exprimant une protéine fluorescente verte dirigée par le promoteur p21SEN et ainsi, nous avons pu observer et suivre son activation à travers un signal vert durant la sénescence induite par les différents traitements utilisés. De plus, de façon intéressante, nos résultats ont également permis de montrer que cette expression de p21SEN durant la TIS semble être partiellement indépendante du facteur de transcription p53. Ainsi, nous suggérons que le promoteur p21SEN pourrait servir de rapporteur, en partie indépendant de p53, de l'induction de la sénescence dans un modèle utilisant un système de surveillance non invasif des décisions relatives au devenir des cellules dans le cancer de l'ovaire. / Ovarian carcinoma is one of the deadliest gynecological tumors worldwide, and particularly in Canada. In fact, it is the third most common cancer of the female reproductive system in Canada, according to the Canadian Cancer Society, which estimates that out of 3,000 Canadian women diagnosed with ovarian cancer in 2022, around 1,950 will not survive the disease. First-line treatments for this cancer include cytoreductive surgery combined with platinum and taxane chemotherapy such as the combination of the anticancer drugs Carboplatin and Paclitaxel. Other treatments include radiation therapy and, more recently, poly (ADP-ribose) polymerase inhibitors (PARPi) such as Olaparib, which are now used as first-line therapy for this type of cancer. These treatments can lead to different cell fate decisions, involving not only cancer cell death or survival, but also a treatment-induced proliferation arrest called TIS for therapy-induced senescence. While cell fate decisions are critical to the outcome of cancer treatment, our ability to measure cell fate in real time in cancer is extremely limited. For this reason, there are no ovarian cancer models that can provide non-invasive monitoring of cell fate at specific time points with tailored biomarkers, to decipher the role of different cell fates, or to serve as accurate experimental controls in preclinical testing of fate-based intervention strategies. Nevertheless, we have demonstrated that a fragment of the p21 promoter, which we have termed p21SEN, is expressed only during radiation-, chemotherapy-, and PARPi-induced senescence in clear cell ovarian adenocarcinoma cell lines (TOV21G). Indeed, we generated cell lines expressing a green fluorescent protein directed by the p21SEN promoter and thus, we were able to observe and follow its activation through a green signal during the senescence induced by the different treatments used. Moreover, interestingly, our results also showed that this expression of p21SEN during TIS seems to be partially independent of the transcription factor p53. Thus, we suggest that the p21SEN promoter could serve as a partially p53-independent reporter of senescence induction in a model using a non-invasive monitoring system of cell fate decisions in ovarian cancer.