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  • About
  • The Global ETD Search service is a free service for researchers to find electronic theses and dissertations. This service is provided by the Networked Digital Library of Theses and Dissertations.
    Our metadata is collected from universities around the world. If you manage a university/consortium/country archive and want to be added, details can be found on the NDLTD website.
191

Inibição simultânea dos genes antiapoptóticos Bcl-2 e Bcl-XL em células de leucemia  linfoide aguda e células de linfoma do manto mediante RNA de interferência / Simultaneous inhibition of antiapoptóticosBcl-2 and Bcl-XL genes acute lymphocytic leukemia and mantle cell lymphoma by RNA interference

Viviane Dias Faustino 06 November 2012 (has links)
As estatísticas relacionadas aos cânceres hematológicos indicam que a incidência e mortalidade dessas doenças têm aumentado ao longo dos anos. Embora a maioria dos casos de linfomas e leucemias não possua etiologia definida, sugere-se que fatores genéticos possam estar envolvidos. Nesse contexto, destaca-se a família de proteínas Bcl-2, divididas em anti e pró-apoptóticas. Os genes Bcl-2 e Bcl-XL, membros de uma nova classe de oncogenes, que atuam no mecanismo de morte celular das células cancerígenas, sobretudo apoptose, a qual é controlada por numerosos sinais intra e extracelulares. Uma nova estratégia para o tratamento desta doença inclui a terapia gênica mediada por RNA de interferência, que silencia importantes genes, a exemplo dos genes da família Bcl-2. Visto que o silenciamento isolado de um único gene pode não ter resultados expressivos, o presente trabalho teve por objetivo desenhar um RNA de interferência (RNAi) homólogo a dois tipos distintos de RNA mensageiro (RNAm) e inibir simultaneamente os genes Bcl-2 e Bcl-XL,assim como testar a inibição isolada dos mesmos. Amostras de linhagem tumoral Jurkat e Granta-519 foram avaliadas após transfecção com os seguintes RNA:i Bcl-2,Bcl-XL, Bcl-2/Bcl-XL,Bcl-2+Bcl-XL e scramble. Os nossos achados evidenciam que, na linhagem Granta-519, a sequência do RNAi Bcl-2 inibe, isoladamente ou conjugado ao Bcl-XL, o gene Bcl-2. Deste modo, o RNAi Bcl-2 apresenta-se mais eficiente no mecanismo de silenciamento gênico, uma vez que propicia a morte celular frente a toxicidade do quimioterápico etoposide. / The hematological cancer statistics indicates that its incidence and mortality have increased over the years. Although most cases of lymphomas and leukemias has no definite etiology however is suggested that genetic factors may be involved. In this context there is the Bcl-2 proteins family divided into anti-apoptotic and pro-apoptotic which Bcl-2 and Bcl-XL genes are members of a new class of oncogenes that act in cancer cells death mechanisms, especially apoptosis, that is controlled by numerous intra-and extracellular signals. Among new strategies to treat hematological cancer includes gene therapy mediated by RNA interference, which can decrease expression of genes like Bcl-2 family components. Studies of single gene silencing have not shown significant results so this study aimed to design an RNA interference (iRNA) homologous to two distinct types of messenger RNA (mRNA) and inhibit both genes Bcl-2 and Bcl-XL -XL as well as test the inhibition. Commercial cells Jurkat and Granta-519 were evaluated after transfection with iRNA as follows: Bcl-2, Bcl-XL, Bcl-2/Bcl-XL, Bcl-2+Bcl-XL and scramble. Our findings show that in Granta-519 cell line Bcl-2 RNAi sequence inhibits, alone or conjugated to Bcl-XL, Bcl-2 gene. Thus RNAi Bcl-2 appears more effective in gene silencing mechanism as it promotes cell death due chemotherapeutic agent etoposide toxicity.
192

Análise funcional e expressão do gene homeobox HOXB7 em adenocarcinomas pancreáticos ductais / Functional analysis and expression of the homeobox gene HOXB7 in pancreatic ductal adenocarcinoma

Chile, Thais 12 April 2013 (has links)
O adenocarcinoma pancreático ductal representa a quarta causa de morte por câncer, visto que as taxas de incidência são praticamente idênticas às taxas de mortalidade, o que justifica a natureza altamente agressiva do tumor. Em uma análise preliminar realizada por nosso grupo, avaliou-se a expressão do gene homeobox HOXB7 nas linhagens celulares MIA PaCa-2, BxPC-3 e Capan-1, bem como em tecidos pancreáticos normais, detectando-se o aumento significativo da expressão nas células derivadas de adenocarcinoma pancreático. Alterações na expressão de HOXB7 foram relatadas na formação e progressão de outros cânceres. Nessas condições, este estudo visou não somente avaliar a expressão deste gene em uma série de 29 adenocarcinomas pancreáticos ductais, 6 tecidos metastáticos e 24 tecidos peritumorais, comparando-os aos tecidos normais, mas também averiguar o efeito de sua inibição sobre o perfil de expressão das células citadas. A análise da expressão gênica demonstrou a hiperregulação do transcrito do gene HOXB7 nos tecidos tumorais, corroborando os resultados observados nas linhagens celulares MIA PaCa-2, BxPC-3 e Capan-1. A inibição realizada com RNA de interferência promoveu a modulação de diferentes processos biológicos nas três linhagens celulares pesquisadas, bem como a indução de apoptose e diminuição da proliferação das células MIA PaCa-2. Nesse contexto, o homeobox neste estudo investigado representa mais um componente associado à ampla rede de moléculas envolvidas na caracterização do câncer pancreático e um promissor alvo para futuras terapias biológicas / The pancreatic ductal adenocarcinoma is the fourth leading cause of cancer death, whereas the incidence rates are practically identical to mortality rates, which explains the highly aggressive tumor. In a preliminary analysis performed by our group, we evaluated the expression of the homeobox gene HOXB7 in cell lineages MIA PaCa-2, BxPC-3 and Capan-1, as well as in normal pancreatic tissue, detecting a significant increase in expression in cells derived from pancreatic adenocarcinoma. Changes in expression of HOXB7 were reported in the formation and progression of other cancers. Under these conditions, this study aimed to not only evaluate the expression of this gene in a series of 29 pancreatic ductal adenocarcinomas, 6 metastatic tissues and 24 peritumoral tissues, comparing them to normal tissues, but also examined the effect of its inhibition on the expression profile of the cells mentioned. The analysis of gene expression showed the hyper-regulation of HOXB7 gene transcript in the tumor tissues, confirming the results observed in cell lineages MIA PaCa-2, BxPC-3 and Capan-1. The inhibition performed with RNA interference promoted the modulation of different biological processes in all three cell lines investigated, as well as the induction of apoptosis and decreased in proliferation of the MIA PaCa-2 cells. In this context, the homeobox investigated in this study represents another component associated with the extensive network of molecules involved in the characterization of pancreatic cancer and a promising target for future biologic therapies
193

Silenciamento gênico por interferência de RNA (RNAi) em traça-do-tomateiro, Tuta absoluta (Meyrick), utilizando bactérias expressando dupla fita de RNA (dsRNA) / Gene silencing by RNA interference (RNAi) in tomato leafminer, Tuta absoluta (Meyrick), using bactéria expressing double-stranded RNA (dsRNA)

Bento, Flavia de Moura Manoel 15 December 2017 (has links)
O uso da técnica de RNAi vem sendo avaliada em diversos insetos-pragas pois, é uma estratégia inovadora que pode ser integrada no manejo de importantes pragas agrícolas. Os insetos da Ordem Lepidoptera são reconhecidos por apresentarem recalcitrância à técnica de silenciamento utilizando dsRNA. Assim, ajustes devem ser feitos aos métodos de entrega de dsRNA para que haja estabilidade da molécula até atingir o mRNA alvo de silenciamento no inseto. O silenciamento gênico por RNAi possui potencial de uso para o controle da \"traça-do-tomateiro\" Tuta absoluta (Meyrick, 1917) (Lepidoptera: Gelechiidae), uma das principais pragas do tomateiro no mundo. O objetivo do trabalho foi selecionar e avaliar o silenciamento de genes de T. absoluta, utilizando o método de entrega de dsRNA via bactéria E. coli HT115 (DE3), disponibilizada em dieta artificial. Também, objetivando a aplicabilidade da utilização de bactérias que se desenvolvam no mesmo hábitat de insetos-pragas, estudou-se a colonização das bactérias endofíticas Pantoea agglomerans linhagem 33.1, Burkholderia sp. linhagem SCMS54 e Burkholderia ambifaria linhagem RZ2MS16 em plantas de tomateiro e lagartas de T. absoluta, para posterior transformação e tentativa de utilização como estratégia de entrega de dsRNA para silenciamento de genes alvos de T. absoluta. Foram avaliados, por meio da metodologia de dieta artificial, oito genes de T. absoluta: juvenile hormone inducible protein - JHP; juvenile hormone epoxide hydrolase protein - JHEH; ecdysteroid 25-hydroxylase - PHM; chitin synthase A - CHI; glutathione S-transferase epsilon 2 - GST; carboxylesterase - COE; alkaline phosphatase - AP e; arginine kinase - AK. Por meio de avaliação dos parâmetros biológicos (mortalidade larval; duração da fase larval e peso de pupas) e expressão gênica em cinco períodos de alimentação, comprovou-se a eficiência da metodologia na avaliação do silenciamento gênico por RNAi, sendo possível realizar screening de grande quantidade de genes e avaliar os efeitos do silenciamento gênico no desenvolvimento de T. absoluta. Os genes AK, CHI e JHP apresentaram resultados positivos quanto ao silenciamento gênico e mortalidade larval, sendo promissores para uso de silenciamento por RNAi como estratégia de controle de T. absoluta. Pantoea agglomerans apresentou os melhores resultados de colonização de plantas de tomateiro \"Micro-Tom\" e lagartas de T. absoluta, além de estarem presentes em tecidos preferencialmente utilizados na alimentação das lagartas. Porém, lagartas não apresentaram diferenças na mortalidade larval ao se alimentarem de plantas de tomateiro \"Micro-Tom\" inoculadas com bactérias de P. agglomerans transformadas. / The use of RNAi technique has been evaluated in several insect pests because it is an innovative strategy that can be integrated in the management of important agricultural pests. Insects of the Order Lepidoptera are recognized to present recalcitrance to gene silencing using dsRNA. Thus, adjustments should be done to dsRNA delivery methods to have molecule stability until it reaches the mRNA target for silencing in the insect. Gene silencing by RNAi has potential use to control the tomato leafminer Tuta absoluta (Meyrick, 1917) (Lepidoptera: Gelechiidae), one of the main insect pests of tomato crop worldwide. The objective of this work was to select and evaluate the silencing of T. absoluta genes using dsRNA delivery method via E. coli HT115 (DE3) bacterium, offered in artificial diet. Also, aiming the applicability of the use of bacteria growing in the same habitat of insect pests, we evaluate the colonization of the endophytic bacteria Pantoea agglomerans strain 33.1, Burkholderia sp. strain SCMS54 and Burkholderia ambifaria strain RZ2MS16 in tomato plants and T. absoluta larvae for further transformation and potential use as dsRNA delivery strategy for silencing target genes of T. absoluta. We evaluated eight genes of T. absoluta: juvenile hormone inducible protein - JHP; juvenile hormone epoxide hydrolase protein - JHEH; ecdysteroid 25-hydroxylase - PHM; chitin synthase A - CHI; glutathione S-transferase epsilon 2 - GST; carboxylesterase - COE; alkaline phosphatase - AP and; arginine kinase - AK. Evaluating biological parameters (larval mortality, larval stage duration and pupal weight) and gene expression in five feeding periods, we proved the efficiency of the methodology in the evaluation of gene silencing by RNAi, and evaluated the effects of gene silencing on the development of T. absoluta. The genes AK, CHI and JHP presented positive results regarding gene silencing and larval mortality, being promising to use RNAi silencing as a strategy to control T. absoluta. Pantoea agglomerans showed good results colonizing \"Micro-Tom\" tomato plants and T. absoluta larvae, besides being present in tissues preferentially used by larvae for feeding. However, larvae did not show differences in larval mortality when feeding on tomato plants inoculated with transformed P. agglomerans.
194

Organogênese in vitro em laranja azeda (Citrus aurantium L.) e transformação genética de limão \'Cravo\' (Citrus limonia L. Osbeck) e laranja \'Valência\' (Citrus sinensis L. Osbeck) com o gene da replicase do Marafivirus / In vitro organogenesis in sour orange (Citrus aurantium L.) and genetic transformation of Rangpur lime (Citrus limonia L. Osbeck) and Valencia sweet orange (Citrus sinensis L. Osbeck) with the Marafivirus replicase gene

Silva, Rosely Pereira da 30 June 2008 (has links)
Embora desfrute de inegável importância econômica, os citros estão sujeitos a muitos problemas sanitários sendo alguns, limitantes para o cultivo como é o caso das doenças causadas por vírus. A morte súbita dos citros é uma doença relacionada à combinação copa/ porta-enxerto e manifesta sintomas na região da enxertia sobre porta-enxertos intolerantes. Embora sua etiologia não tenha sido determinada, há indicações que a causa da MSC esteja relacionada a uma estirpe do vírus da tristeza dos citros (CTV), a um vírus do gênero Marafivirus, ou a uma associação entre eles. Uma vez que a transformação genética têm sido considerada como uma ferramenta auxiliar a programas de melhoramento de citros, o objetivo deste trabalho foi obter plantas transgênicas de limão \'Cravo\' e laranja \'Valência\' contendo o gene da replicase do Marafivirus e estudar a regeneração e obtenção de plantas in vitro de laranja azeda, via organogênese, visando futuros trabalhos de transformação genética. Experimentos para indução da organogênese in vitro foram realizados avaliando-se citocininas (BAP, TDZ e CIN), em diferentes concentrações, isoladamente ou em combinação com ANA, condições de luminosidade (fotoperíodo de 16 h e escuro por 30 dias), meios de cultivo e explantes (provenientes de plantas germinadas in vitro e de plantas mantidas em estufa). Além disso, avaliou-se o enraizamento dos brotos regenerados. Para a transformação genética, explantes de limão \'Cravo\' e laranja \'Valência\' foram inoculados e co-cultivados com a estirpe EHA 105 de Agrobacterium tumefaciens contendo o gene da replicase do Marafivirus (em seqüência sense e antisense interligadas por um íntron). A construção gênica foi elaborada a partir do plasmídeo pCAMBIA 2201, dirigidas pelo promotor 35S e terminador NOS, contendo ainda o gene de seleção nptII. A transformação foi confirmada por análises de PCR e \'Southern blot\'. A transcrição do gene foi avaliada por RT-PCR e \'northern blot\'. A adição de BAP, combinada ou não com ANA, e em combinações com CIN ao meio de cultivo, assegurou maior formação de gemas adventícias em segmentos de epicótilo de laranja azeda. Entretanto, TDZ não se mostrou favorável a essa resposta, que também é afetada pela ausência de luz. Os explantes provenientes do cultivo in vitro mostraram-se mais favoráveis à resposta organogênica. O enraizamento das brotações de laranja azeda regeneradas foi obtido no meio MT com metade da concentração de sais, sem ou com auxinas. Foi possível obter plantas transgênicas de limão \'Cravo\' e de laranja \'Valência\' contendo o gene da replicase do Marafivirus utilizando-se segmentos internodais como explantes. A análise de \'Southern blot\' confirmou a integração de um a quatro eventos de inserção do transgene no genoma das plantas. A transcrição do gene da replicase do Marafivirus e do gene nptII foi observada por RT-PCR. / In spite of great economic importance, the citrus industry is affected by many phytopathological problems some, limiting its cultivation such as virus-caused diseases. The citrus sudden death disease is related to scion/rootstock combinations and manifests symptoms in the grafting area of intolerant rootstocks. Although its etiology has not been determined, there are indications that the cause of MSC might be related to a strain of the Citrus tristeza virus (CTV), to a virus of the Marafivirus group, or to an association of both viruses. Since the genetic transformation has been considered as an auxiliary tool to programs of citrus improvement, the objectives of this work were to obtain transgenic plants of the Rangpur lime and Valencia sweet orange containing the Marafivirus replicase gene and study the in vitro regeneration of sour orange plants through organogenesis, aiming for future work in genetic transformation. Experiments for induction of in vitro organogenesis were carried out evaluating citocinins (BAP, TDZ and KIN), in different concentrations, separately or in combination with NAA, lighting conditions (photoperiod of 16 hours and darkness for 30 days), cultivation media and explants (coming from in vitro germinated plants and from green house cultivated plants). Besides this, rooting of the regenerated shoots was evaluated. For the genetic transformation, Rangpur lime and Valencia sweet orange explants were inoculated and co-cultivated with the EHA-105 Agrobacterium tumefaciens strain containing the Marafivirus replicase gene (in sense and antisense sequence linked by an intron). The genetic construct used derived from the pCAMBIA 2201 plasmid, driven by the 35S promoter and NOS terminator, containing the selection nptII gene. The genetic transformation was confirmed by PCR and Southern blot analysis. The gene transcription was evaluated by RT-PCR and northern blot. The addition of BAP to the culture medium, combined or not with NAA, and in combinations with KIN, assured a greater formation of adventitious buds in sour orange epicotyl segments. However, TDZ was not favorable to this response, that is also affected by the absence of light. Explants coming from in vitro cultivation were more favorable to the organogenic response. Rooting of sour orange regenerated shoots was obtained in MT medium with half the salt concentration, with or without auxin. It was possible to obtain transgenic Rangpur lime and Valencia sweet orange plants containing the Marafivirus replicase gene using internodal segments as explants. The Southern blot analysis confirmed the integration of one to four copies of the transgene in the plant genome. The transcription of the Marafivirus replicase gene and the nptII gene was observed by RT-PCR.
195

Rationale design of polymeric siRNA delivery systems

Kim, NaJung 01 July 2011 (has links)
Regulation of gene expression using small interfering RNA (siRNA) is a promising strategy for research and treatment of numerous diseases. However, siRNA cannot easily cross the cell membrane due to its inherent instability, large molecular weight and anionic nature. For this reason, a carrier that protects, delivers and unloads siRNA is required for successful gene silencing. The goal of this research was to develop a potential siRNA delivery system for in vitro and in vivo applications using cationic polymers, chitosan and polyethylenimine (PEI), poly(ethylene glycol) (PEG), mannose, and poly(D,L-lactic-co-glycolic acid) (PLGA). Furthermore, the delivery system was constructed in two different ways to explore the effect of mannose location in the structure. In the first approach, mannose and PEG were directly conjugated to the chitosan/PEI backbone, while mannose was connected to the chitosan/PEI backbone through PEG spacer in the second approach. First, the ability of modified chitosan polymers to complex and deliver siRNA for gene silencing was investigated. Despite the modified chitosan polymers successfully formed nanoplexes with siRNA, entered target cells and reduced cytotoxicity of unmodified chitosan, they showed limited gene silencing efficiency. For this reason, modified PEIs were examined to improve in vitro gene knockdown. The modified PEI polymers also complexed with siRNA and facilitated endocytosis of the nanoplexes. In addition, the modifications reduced inherent cytotoxicity of unmodified PEI without compromising the gene silencing efficiency on both mRNA and protein levels. Interestingly, we found that complexation of siRNA with PEI-PEG-mannose resulted in higher cell uptake and gene silencing than complexes made with mannose-PEI-PEG. Finally, the effect of sustained release of the mannosylated pegylated PEI/siRNA nanoplexes on gene silencing was tested by encapsulating the nanoplexes within PLGA microparticles. The modified PEIs enhanced the entrapment efficiency of siRNA into the particles and resulted in reduced initial burst followed by sustained release. Incorporating the modified PEIs increased cellular uptake of siRNA, whereas it did not enhance in vitro gene knockdown efficiency due to the sustained release properties. The modified PEIs reduced the in vitro cytotoxicity and in vivo hepatotoxicity of the PLGA microparticles. In addition, encapsulating the nanoplexes into PLGA microparticles further reduced the cytotoxicity of PEI. Throughout the study, the second structure was proven more efficacious than the first structure in cellular uptake, gene silencing, siRNA encapsulation, and sustained release. We have developed novel polymeric siRNA delivery systems that enhance delivery efficiency and cellular uptake of siRNA. They have great potential for utility as a long-acting siRNA delivery system in biomedical research.
196

Developing an optimal method for producing a tearless onion

Kamoi, T. January 2008 (has links)
People experience the irritating tearing and burning sensation of lachrymatory factor (LF, propanthial S-oxide) when cutting or chopping onion bulbs. LF is produced by lachrymatory factor synthase (LFS) specifically from 1-propenyl sulfenic acid, a breakdown product of trans-1-propenyl-L-cysteine sulfoxide (1-PRENCSO) by alliinase. This thesis describes strategies to produce a tearless onion by using RNA interference (RNAi) silencing. To determine whether a gene silencing cassette can silence lfs gene transcripts from onion (Allium cepa L.), a crop recalcitrant to genetic transformation, a gene silencing assessment system was developed by using a model plant as a host for the gene of interest. Tobacco (Nicotiana tabacum) plants transgenic for LFS enzyme activity from onion were first produced by introducing a CaMV 35S-onion-lfs gene construct. These plants were then subjected to a second transformation with an RNAi construct directed against the lfs gene sequence. LFS enzyme activity assay showed that the transgenic plants, containing both the lfs gene and the RNAi construct, had significantly reduced LFS activity. This observation was supported by Western analysis for the LFS protein and further validated by quantitative RT-PCR analysis that demonstrated a significant reduction in the lfs transcript level in the dual transformants. This work demonstrated that the RNAi construct is a suitable candidate for the development of a tearless onion. This model plant RNAi system has wide reaching applications for assessment and targeting of plant secondary pathway genes, from poorly studied or recalcitrant plant species, that are important in pharmacological, food and process industries. The functional RNAi vector identified in the model system was transformed into onion. Endogenous lfs transcript levels were successfully reduced by up to 43-fold in six transgenic lines. In consequence, LFS enzyme activity was decreased by up to 1573-fold and this observation was supported by Western analysis for the LFS protein. Furthermore, the production of the deterrent LF upon tissue disruption was reduced up to 67-fold. Subjective olfactory assessment of silenced lines indicated that the pungent odour given off by the leaf and bulb material was much reduced compared with that of non-transgenic counterparts, and that this was replaced by a sweeter milder onion odour. A novel colorimetric assay demonstrated that this silencing had shifted the 1-PRENCSO breakdown pathway so that by reducing LFS protein, more 1-propenyl sulfenic acid was converted into di-1-propenyl thiosulfinate. A consequence of the raised thiosulfinates levels was a marked increase in the downstream production of a non-enzymatically produced zwiebelane isomer that has never previously been identified, and other volatile compounds, di-1-propenyl disulfides and 2-mercapto-3,4-dimethyl-2,3-dihydrothiophenes, which had previously been reported either in small amounts or had not been detected in onions. These raised volatile sulfur compounds provide an explanation for the unique flavour notes of the LF reduced onion and are predicted to have health benefits akin to those found in garlic. These results demonstrated that silencing of LFS enzyme activity by introducing an RNAi construct directed against the lfs gene sequence simultaneously reduced levels of the deterrent LF and increased the desirable thiosulfinates in onions.
197

Testing the effect of in planta RNA silencing on Plasmodiophora brassicae infection

Bulman, S. R. January 2006 (has links)
In the late 1990s, a series of landmark publications described RNA interference (RNAi) and related RNA silencing phenomena in nematodes, plants and fungi. By manipulating RNA silencing, biologists have been able to create tools for specifically inactivating genes. In organisms from trypanosomes to insects, RNA silencing is now indispensible for studying gene function. RNA silencing has been used in a project aimed at systematically knocking out all genes in the model plant Arabidopsis thaliana. RNA silencing has a natural role in defending eukaryotic cells against virus replication. By assembling virus DNA sequences in a form that triggers RNA silencing, biologists have created plants resistant to specific viruses. In this study, we set out to test if a similar approach would protect plants against infection by the agriculturally important Brassica pathogen, Plasmodiophora brassicae. P. brassicae is an obligate intracellular biotroph, from the little studied eukaryotic supergroup, the Rhizaria. To identify the gene sequences that would be starting material for P. brassicae RNA silencing, new P. brassicae genes were gathered by cDNA cloning or genomic PCR-walking. Using suppression subtractive hybridisation (SSH) and oligo-capping cloning of full-length cDNAs, 76 new gene sequences were identified. A large proportion of the cDNAs were predicted to contain signal peptides for ER translocation. In addition to the new cDNA identified here, partial sequences for the P. brassicae actin and TPS genes were published by other researchers close to the beginning of this study. Using PCR-walking, full-length genomic DNA sequences from both genes were obtained. Later, genomic DNA sequences spanning or flanking a total of 24 P. brassicae genes were obtained. The P. brassicae genes were rich in typical eukaryotic spliceosomal introns. Transcription of P. brassicae genes also appears likely to begin from initiator elements rather than TATA-box-containing promoters. A segment of the P. brassicae actin gene was assembled in hairpin format and transformed into Arabidopsis thaliana. Observation of simultaneous knockdown of the GUS marker gene as well as detection of siRNAs indicated that the hpRNA sequences induced RNA silencing. However, inoculation of these plants with P. brassicae resulted in heavy club root infection. We were unable to detect decreases in actin gene expression in the infecting P. brassicae, at either early or late stages of infection. We conclude that, within the limits of the techniques used here, there is no evidence for induction of RNA silencing in P. brassicae by in planta produced siRNAs.
198

Identification of Genes Associated with the Endocrine Heart under Normal and Pathophysiological Conditions Using Genomic and Transcriptional Analysis

Forero McGrath, Monica 28 September 2011 (has links)
The endocrine heart synthesises and secretes two polypeptide hormones: the natriuretic peptides (NP) atrial natriuretic factor (ANF) and B-type natriuretic peptide (BNP). The biological actions of these hormones serve both acutely and chronically to reduce systemic blood pressure and hemodynamic load to the heart, thus contributing to the maintenance of cardiorenal homeostasis. Considerable effort has been focused on the elucidation of the mechanistic underlying ANF and BNP gene expression and secretion but much remains to be determined regarding specific molecular events involved in the cardiocyte secretory function. These hormones are produced by the atrial muscle cells (cardiocytes), which display a dual secretory/muscle phenotype. In contrast, ventricular cardiocytes display mainly a muscle phenotype. Comparatively little information is available regarding the genetic background for this important phenotypic difference with particular reference to the endocrine function of the heart. We postulated that comparison of gene expression profiles between atrial and ventricular muscles would help identify transcripts that underlie the phenotypic differences associated with the endocrine function of the heart as well as identify signaling pathways involved in its regulation. The cardiac atrial and ventricular transcriptomes were analyzed using oligonucleotide microarrays under normal or chronically induced aortocaval shunt volume-overload conditions. Transcriptional differences were validated by RT-PCR and transcripts of interest were knocked-down by RNAi. Comparison of gene expression profiles in the rat heart revealed a total of 1415 differentially expressed genes between normal atrial and ventricular tissues. Functional classification and pathway analysis identified numerous transcripts involved in mechanosensing, vesicle trafficking, hormone secretion, and G protein signaling. Volume-overloaded animals exhibited a progressive increase in cardiac mass over the four-week time course, an increase in expression of known hypertrophic genes, as well as the differential expression of 700 genes within the atria. Volume-overload specifically downregulated the accessory protein for heterotrimeric G protein signaling RASD1 in the atria. In vitro, knockdown of RASD1 in the atrial-derived HL-1 cells, significantly increased ANF secretion, demonstrating a previously unknown negative modulator role for RASD1. The data developed in this investigation provides insight into the expression profiles of genes particularly centered on the secretory function of the heart under normal and chronic hemodynamic overload conditions. Genome-wide expression profile analysis identified RASD1 as being differentially expressed between cardiac tissues as well as being modulated by chronic volume overload. RASD1 emerges as a tonic inhibitor of ANF secretion. The novel function identified herein for RASD1 in the atria is of considerable interest given the fact that secretory impairment of the cardiac natriuretic hormones can negatively impact cardiovascular homeostasis.
199

Identification of Genes Associated with the Endocrine Heart under Normal and Pathophysiological Conditions Using Genomic and Transcriptional Analysis

Forero McGrath, Monica 28 September 2011 (has links)
The endocrine heart synthesises and secretes two polypeptide hormones: the natriuretic peptides (NP) atrial natriuretic factor (ANF) and B-type natriuretic peptide (BNP). The biological actions of these hormones serve both acutely and chronically to reduce systemic blood pressure and hemodynamic load to the heart, thus contributing to the maintenance of cardiorenal homeostasis. Considerable effort has been focused on the elucidation of the mechanistic underlying ANF and BNP gene expression and secretion but much remains to be determined regarding specific molecular events involved in the cardiocyte secretory function. These hormones are produced by the atrial muscle cells (cardiocytes), which display a dual secretory/muscle phenotype. In contrast, ventricular cardiocytes display mainly a muscle phenotype. Comparatively little information is available regarding the genetic background for this important phenotypic difference with particular reference to the endocrine function of the heart. We postulated that comparison of gene expression profiles between atrial and ventricular muscles would help identify transcripts that underlie the phenotypic differences associated with the endocrine function of the heart as well as identify signaling pathways involved in its regulation. The cardiac atrial and ventricular transcriptomes were analyzed using oligonucleotide microarrays under normal or chronically induced aortocaval shunt volume-overload conditions. Transcriptional differences were validated by RT-PCR and transcripts of interest were knocked-down by RNAi. Comparison of gene expression profiles in the rat heart revealed a total of 1415 differentially expressed genes between normal atrial and ventricular tissues. Functional classification and pathway analysis identified numerous transcripts involved in mechanosensing, vesicle trafficking, hormone secretion, and G protein signaling. Volume-overloaded animals exhibited a progressive increase in cardiac mass over the four-week time course, an increase in expression of known hypertrophic genes, as well as the differential expression of 700 genes within the atria. Volume-overload specifically downregulated the accessory protein for heterotrimeric G protein signaling RASD1 in the atria. In vitro, knockdown of RASD1 in the atrial-derived HL-1 cells, significantly increased ANF secretion, demonstrating a previously unknown negative modulator role for RASD1. The data developed in this investigation provides insight into the expression profiles of genes particularly centered on the secretory function of the heart under normal and chronic hemodynamic overload conditions. Genome-wide expression profile analysis identified RASD1 as being differentially expressed between cardiac tissues as well as being modulated by chronic volume overload. RASD1 emerges as a tonic inhibitor of ANF secretion. The novel function identified herein for RASD1 in the atria is of considerable interest given the fact that secretory impairment of the cardiac natriuretic hormones can negatively impact cardiovascular homeostasis.
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Functional gene analysis in cultured vertebrate cells using siRNA mediated gene silencing / Funktionelle Genanalyse in kultivierten Vertebratenzellen durch siRNA bewirkte Gensupression

Gruber, Jens 10 February 2005 (has links)
No description available.

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