In recent years super-hydrophobic micro-patterned substrates (SHS) have been successfully used for the suspension of a few biological molecules, allowing the further characterization in a background-free environment by label-free techniques such as Raman spectroscopy, SEM and TEM in one device. This result is due to the combined action of laminar flow and shear stress exerted on the molecules contained in a drop that is spotted on top of the SHS and slowly evaporates. This new method is here proposed for the label-free formation and background-free characterization of amyloid fibers. Amyloids are insoluble aggregates formed by proteins that convert from a misfolded form into highly-organized β-sheet structures that could accumulate in different organs and compromise their normal physiological functions. Known amyloid-related diseases, named amyloidosis, are for instance Alzheimer, Parkinson, and type 2 diabetes. In classical crystallography, the study of the amyloid aggregates structure is often hampered by the laborious and time consuming sample preparation techniques. Therefore the need of a quick reproducible technique, has emerged. The amyloid fibers investigated in this work are derived from a lysozyme protein and a Tau-derived short peptide, both known to be related to two forms of amyloidosis. With this technique we demonstrate that threads of protein fibers are deposited on the substrate helped by the patterning of the SHS and its properties, and by characterizing them with Raman spectroscopy technique we revealed that they are anisotropic structures of amyloid nature. This type of sample preparation technique arises from the effect of the evaporation on the SHS, and opens up new possibilities for the formation of oriented fibers of amyloids and more in general, of proteins, ready for a substrate-free characterization, while classic crystallographic methods could have a limitation.

The novel method herein proposed, aims to study Deoxyribonucleic acid (DNA) and Rad51 repair protein in its resting state after their interaction by using a combination of biological preparation and physical measures. Rad51 is a highly conserved protein; it is involved in eukaryotes genome stability and can interact with single strand (ss) and double strands (ds) DNA. In our work, a droplet of the solution containing the dsDNA/Rad51 complexes was deposited on micro-fabricated super-hydrophobic substrates (SHS) to obtain self-organized and suspended fibers. The silicon-based SHS were designed to incorporate a regular circular array of pillars and to maintain a high contact angle with the drop. The samples were let dehydrate at controlled temperature and humidity conditions. At the end of the buffer evaporation process, non-suspended material and salt excess are concentrated on the top of a few micro-pillars in a limited area (drop residual) of the device while ordered and self-assembled DNA/Rad51 fibers are suspended between micro-pillars. To find the ideal conditions to obtain and suspend the nucleic acid/protein complexes, several parameters were investigated: saline buffer, DNA and protein concentrations were widely titrated and showed a significant effect on the biomolecule suspension on SHS. The samples were then preliminarily checked by microscopy techniques and then described by the Raman spectra acquired. Several techniques were used: optical microscopy, Energy Dispersive X-Ray Spectroscopy (EDAX), Scanning Electron Microscopy (SEM) and Raman Spectroscopy. Protein expressions, DNA suspension, micro-fabrication and characterization were all performed in KAUST Core Labs and Structural Molecular Imaging Light Enhanced Spectroscopies (SMILEs) Lab. The novel approach presented in this work is highly multidisciplinary and comprises physical measurements (Raman spectroscopy and EM imaging), chemistry and biology. In future the method can be used further expanded supporting the data with HRTEM direct imaging to elucidate the nucleic acids/proteins behavior in the multiple phases of the genome repair processes. Also, it and can serve as a fingerprint of the biological molecules involved in biological interactions, their localization and structural characterization, providing a new tool for structural analysis, screening and diagnostics.

Water droplets tend to bead up on rough or textured hydrophobic surfaces by trapping air on the crevices underneath resulting in “Cassie” state of wetting. When a textured hydrophobic surface is immersed in water, the resulting underwater “Cassie” state can lead to significant drag reduction. The entrapped air pockets act as shear free regions and the composite interface consisting of alternate no slip and no shear regions thus formed can deliver substantial drag reduction during flow. The magnitude of drag reduction depends not only on the fractional coverage of air on the surface, but also on the size of the air pockets, with larger sized air pockets facilitating larger drag reduction. It is a common observance that Lotus leaf when kept immersed in water for a few minutes loses its water repellency due to the loss of entrapped air on the surface. Underwater Cassie state on textured hydrophobic surfaces is also not sustainable because of the depletion of air pockets caused by the diffusion of trapped air into water. This causes the drag reduction to diminish with time. Rate of diffusion of air across the water–air interface depends on the concentration gradient of air across the interface. Under flow conditions, removal of entrapped air is further enhanced by convection, leading to more rapid shrinkage of the air pockets. In order to sustain the Cassie state, it is thus necessary to continuously supply air to these air pockets. In this work, we explore the possibility of supplying air to the cavities on the textured surface inside a microchannel by controlling the solubility of air in water close to the surface. The solubility is varied by i) Controlling the absolute pressure inside the channel and ii) Localized heating of the surface To trap uniform air pockets, a textured surface containing a regular array of blind holes is used. The textured surface is generated by photo etching of brass and is rendered hydrophobic through a self-assembled monolayer. The sustainability of the underwater Cassie state of wetting on the surface is studied at various flow conditions. The air trapped on the textured surface is visualized using total internal reflection based technique, with the pressure drop (or drag) being simultaneously measured. Water which is initially saturated with air at atmospheric conditions, when subjected to sub-atmospheric pressures within the channel becomes supersaturated causing the air bubbles to grow in size. Further growth causes the bubbles to merge and eventually detach from the surface. The growth and subsequent merging of the air bubbles leads to a substantial increase in the pressure drop because as the air pockets grow in size, they project into the flow and start obstructing the flow. On the other hand, a pressure above the atmospheric pressure within the channel makes the water undersaturated with air, leading to gradual shrinkage and eventual disappearance of air bubbles. In this case, the air bubbles do cause reduction in the pressure drop with the minimum pressure drop (or maximum drag reduction) occurring when the bubbles are flush with the surface. The rate of growth or decay of air bubbles is found to be significantly dependent on the absolute pressure in the channel. Hence by carefully controlling the absolute pressure, the Cassie state of wetting can be sustained for extended periods of time. A drag reduction of up to 15% was achieved and sustained for a period of over 5 hours. Temperature of water also influences the solubility of air in water with higher temperatures resulting in reduced solubility. Thus locally heating the textured hydrophobic surface causes the air bubbles to grow, with the rate of growth being dependent on the heat input. The effect of trapped air bubbles on thermal transport is also determined by measuring the heat transfer rate through the surface in the presence and absence of trapped air bubbles. Even though the trapped air bubbles do cause a reduction in the heat transfer coefficient by about 10%, a large pressure drop reduction of up to 15% obtained during the experiments helps in circumventing this disadvantage. Hence for the same pressure drop across the channel, the textured hydrophobic surface helps to augment the heat transfer rate. The experiments show that, by varying the solubility of air in water either by controlling the pressure or by local heating, underwater Cassie state of wetting can be sustained on textured hydrophobic surfaces, thus delivering up to 15% drag reduction in both cases for extended periods of time. The results obtained hold important implications towards achieving sustained drag reduction in microfluidic applications.

A super-hidrofobicidade é uma característica presente em diversas superfícies encontradas na natureza, conferindo-lhes determinadas características como a autolimpeza. Um dos mais conhecidos exemplos de superfície super-hidrofóbica autolimpante é a da folha de Lótus, que apresenta uma camada de retenção de ar importante entre as cavidades da superfície. Essa retenção de camada de ar entre cavidades é característica marcante de determinadas superfícies super-hidrofóbicas, e tem atraído grande atenção nos últimos anos, por ser de alto interesse tecnológico, econômico e ecológico. Algumas espécies apresentam superfície que retêm essa camada de ar por apenas algumas horas, ou dias. Em outras espécies, porém, ela se mantém por longos períodos. Uma das superfícies mais complexas é a da samambaia flutuante Salvinia, que é capaz de manter uma camada de ar estável durante várias semanas, mesmo quando submersa na água. Diversos estudos têm sido promovidos para fins de desenvolver tecnologias capazes de promover a retenção de ar na superfície por períodos longos, as quais têm grande potencial de aplicação no setor naval, por exemplo, pois serviriam para reduzir o arrasto hidrodinâmico quando utilizadas no revestimento de embarcações, diminuindo o consumo de combustível. Neste trabalho, buscou-se obter, através da mimetização da estrutura da Salvinia e suas espécies, uma superfície super-hidrofóbica retentora de camada de ar capaz de reduzir o arrasto hidrodinâmico. Desenvolveram-se, para tanto, revestimentos formados em duas etapas: uma base formada por fibras de poliamida para gerar rugosidade – aplicadas por flocagem eletroestática –, as quais foram cobertas, via spray, por um organosilano (hidrofóbico). Então, foram caracterizadas as propriedades dos revestimentos quanto à morfologia, ângulo de contato, ângulo de rolamento e volume de ar preso na superfície, bem como realizados testes para verificar sua capacidade de redução de arrasto hidrodinâmico. Os revestimentos super-hidrofóbicos desenvolvidos neste trabalho apresentaram camada de ar sobre a superfície e os testes demonstraram redução de arrasto hidrodinâmico de até 30%. / Super-hydrophobicity is a characteristic found in several surfaces of nature, which gives them certain features such as self-cleaning. One of the most well-known examples of a super-hydrophobic self-cleaning surface is the one present on the Lotus leaf, that contains an important layer of air retention between the cavities of the surface. This layer of air retention between cavities is a characteristic of some superhydrophobic surfaces, and has attracted a lot of attention recently, from technological, economic and ecological fields. Some species have a surface that holds this layer of air for only a few hours or days. Other species, however, maintain that for long periods of time. One of the most complex surfaces is the floating fern Salvinia - able to maintain a stable air layer for several weeks, even when submerged in water. Several studies have been carried out to develop technologies able to keep the air retention on surface for long periods, as they have a great potential to be applied in the naval sector, for instance, because they could reduce the hydrodynamic drag when used in the coating of boats, also reducing fuel consumption.The aim of this work is to obtain, by mimicking Salvinia’s structure and its species, a super-hydrophobic air-layer retaining surface, capable of reducing hydrodynamic drag. For this purpose, coatings composed in two stages were developed: a base composed by polyamide fibers to generate roughness - applied by electrostatic flocking - and covered by an organosilane (hydrophobic) spray. Then, the properties of the coatings were characterized in terms of morphology, angle of contact, rolling angle and volume of air hold on the surface, as well as tests to check their hydrodynamic drag reduction capacity. The super-hydrophobic coatings developed in this work have presented an air layer on surface and the tests has shown a hydrodynamic drag reduction for of up to 30%.

In this thesis, conventional and unconventional technologies have been studied and combined in order to make heterogeneous microfluidics with potential advantages, especially in biological applications. Many conventional materials, like silicon, glass, thermoplastic polymers, polyimide and polydimethylsiloxane (PDMS) have been combined in building heterogeneous microfluidic devices or demonstrators. Aside from these materials, unconventional materials for microfluidics such as stainless steel and the fluoroelastomer Viton have been explored. The advantages of the heterogeneous technologies presented were demonstrated in several examples: (1) For instance, in cell biology, surface properties play an important role. Different functions were achieved by combining microengineering and surface modification. Two examples were made by depositing a Teflon-like film: a) a non-textured surface was made hydrophobic to allow higher pressures for cell migration studies and b) a surface textured by ion track technology was even made super-hydrophobic. (2) In microfluidics, microactuators used for fluid handling are important, e.g. in valves and pumps. Here, microactuators that can handle high-pressures were presented, which may allow miniaturization of high performance bioanalyses that until now have been restricted to larger instruments. (3) In some applications the elastomer PDMS cannot be used due to its high permeability and poor solvent resistivity. Viton can be a good replacement when elasticity is needed, like in the demonstrated paraffin actuated membrane.(4) Sensing of bio-molecules in aquatic solutions has potential in diagnostics on-site. A proof-of-principle demonstration of a potentially highly sensitive biosensor was made by integrating a robust solidly mounted resonator in a PDMS based microfluidic system. It is concluded that heterogeneous technologies are important for microfluidic systems like micro total analysis systems (µTAS) and lab-on-chip (LOC) devices.

No description available.

In this thesis, we focused on the understanding of the synthesis and texturization processes of hydrophobic and (super)hydrophobic fluorinated surfaces by atmospheric plasmas.<p><p>First, we focused on the surface modifications of a model surface, the polytetrafluoroethylene (PTFE), by the post-discharge of a radio-frequency plasma torch. The post-discharge used for the surface treatment was characterized by optical emission spectroscopy (OES) and mass spectrometry (MS) as a function of the gap (torch-sample distance), and the helium and oxygen flow rates. Mechanisms explaining the production and the consumption of the identified species (N2, N2+, He, O, OH, O2m, O2+, Hem) were proposed. <p><p>The surface treatment was then investigated as a function of the kinematic parameters (from the motion robot connected to the plasma torch) and the gas flow rates. Although no change in the surface composition was recorded, oxygen is required to increase the hydrophobicity of the PTFE by increasing its roughness, while a pure helium plasma leads to a smoothing of the surface. Based on complementary experiments focused on mass losses, wettability and topography measurements coupled to the detection of fluorinated species on an aluminium foil by XPS, we highlighted an anisotropic etching oriented vertically in depth as a function of the number of scans (associated to the treatment time). Atomic oxygen is assumed to be the species responsible for the preferential etching of the amorphous phase leading to the rough surface, while the highly energetic helium metastables and/or VUV are supposed to induce the higher mass loss recorded in a pure helium plasma.<p><p>The second part of this thesis was dedicated to the deposition and the texturization of fluorinated coatings in the dielectric barrier discharge (DBD). The effects of the nature of the precursor (C6F12 and C6F14), the nature of the carrier gas (argon and helium), the plasma power, and the precursor flow rate were investigated in terms of chemical composition, wettability, topography and crystallinity by SIMS, XPS, WCA, AFM and XRD. We showed that hydrophobic surfaces with water contact angles (WCA) higher than 115° were obtained only in the presence of argon and were assumed to be due to the roughness created by the micro-discharges. Plasma-polymerized films in helium were smooth and no WCA higher than 115° was observed. We also studied the impact of the deposition rate and the layer thickness in the hydrophobic properties as well as the polymerization processes through the gas phase characterization.<p> / Doctorat en Sciences / info:eu-repo/semantics/nonPublished

Les matériaux carbonés présentent de nombreux avantages pour les domaines des nanotechnologies et de l'environnement.La mixité de chiralité des nanotubes de carbone limite leur application dans les appareils électroniques et le nano-confinement. Dans une première partie, ce travail de thèse s'est concentré sur la séparation en chiralité de nanotubes de carbone de type CoMoCAT, afin d'élaborer de nouveaux nano-conteneurs.Après sélection en chiralité, nous avons évalué les propriétés sous hautes pressions des fagots de nanotubes sélectionnés, et leur interaction avec l'eau. Les résultats ont montré que les fagots supportent des pressions jusqu'à 17 GPa, avant de subir un effondrement radial réversible, permettant de les utiliser en tant que nano-enclumes.L'élaboration d'une éponge de carbone (super)hydrophobe pour le traitement des eaux après pollution aux hydrocarbures a été décrite dans une seconde partie. La pyrolyse de mousses polymères a permis de conserver la très grande porosité de la mousse (> 99%), tout en lui conférant des propriétés proches de la superhydrophobie et de grandes capacités d'absorption de pétrole et solvants organiques (85-200 g/g). L'élasticité du matériau permet sa régénération par simple compression mécanique : récupération du polluant et réutilisation de l'absorbant. De plus, cette caractéristique reste valable même après une centaine de cycles de compression-décompression, en conservant 81% de sa capacité d'absorption dans le cas du pétrole brut / Carbon materials present many advantages for the nanotechnology and environment fields. The chirality mixity of carbon nanotubes limits their application in electronic devices and the nano-confinement. In the first part, this thesis has focused on the chirality separation of CoMoCAT carbon nanotubes, in order to elaborate new nano-containers.After the chirality selection, the properties of selected nanotubes bundles under high pressure were evaluated, as well as their interaction with water. The results show that the bundles support pressures until 17 GPa, before to undergo a reversible collapse, allowing their application as nano-anvils.The (super)hydrophobic carbon sponge elaboration for the clean-up of water polluted by oils was described in the second part. The polymeric foams pyrolysis allows to keep the very high foam porosity (> 99%), to give properties next to the superhydrophobicity and large absorption capacities in oils and organic solvents (85-200 g/g). The material elasticity allows its regeneration by simple mechanical compression : recovery of pollutant and re-use of the absorbant. Moreover, this feature remains valid after a hundred compression-decompression cycles, with 81% of the initial crude oil absorption capacity

Cette thèse conclut 3 années d'études doctorales sur le "dépôt de couches atomiques (ALD) de nitrure de bore (BN)". Le but de ce travail a été d'adapter la voie des céramiques dérivées de polymères (PDC) à la technique ALD pour la croissance de films minces de h-BN et l'élaboration de nanostructures fonctionnelles. Tout d'abord, un nouveau procédé d'ALD sans ammoniac en deux étapes, comprenant une croissance par ALD à basse température (80 °C) de polyborazine (PBN) à partir de 2,4,6-trichloroborazine et d'hexaméthyldisilazane suivi un traitement thermique à haute température sous atmosphère contrôlée a été développé. Ainsi, des films minces uniformes et homogènes de BN ont pu être déposés sur divers substrats. Le caractère autolimité des réactions mises en jeu ainsi que l'homogénéité des films sur des supports très structurés ont été vérifiés. De ce fait des nanostructures fonctionnelles BN ont été réalisées à partir de substrats ou de templates de dimensionnalité variée. Leurs applications en tant que revêtements protecteurs et comme filtres et éponges absorbantes pour purifier les eaux polluées par des hydrocarbures ont en particulier été étudiées. Enfin, un deuxième procédé ALD basse température (85-150°C) utilisant le tri(isopropylamino)borane et la méthylamine comme précurseurs a été préalablement étudié afin de confirmer l'adaptabilité de la voie PDC et la technique ALD. Des films minces de BN ont été obtenus sur des substrats plans et il a été prouvé que les vapeurs de tri(isopropylamino)borane peuvent infiltrer des fibres de polyacrylonitrile électrofilées.Ce travail a été entièrement réalisé à l'Université de Lyon et a reçu le soutien financier du China Scholarship Council (CSC) pour la bourse de doctorat ainsi que de l'Agence Nationale de la Recherche (projet n° ANR-16-CE08-0021-01) / This thesis achieves 3 years of PhD studies on “Atomic layer deposition (ALD) of boron nitride (BN)”. The aim of this PhD work is to adapt the polymer derived ceramics (PDCs) route to the ALD technique for h-BN thin film growth and elaboration of functional nanostructures. A novel two-step ammonia-free ALD process, which includes ALD deposition of polyborazine at low temperature (80 °C) from 2,4,6-trichloroborazine and hexamethyldisilazane followed by post heat treatment under controlled atmosphere, has been established. Conformal and homogeneous BN thin films have been deposited onto various substrates. The self-limitation of the reactions on flat substrates and the conformality of the films on structured substrates have been verified. Functional BN nanostructures have thus been fabricated using substrates or templates with different dimensionalities. In particular, their applications as protective coatings as well as filter and absorber to purify polluted water from organic/oil hav e been investigated. Finally, a second low temperature (85-150 °C) ALD process using tri(isopropylamine)borane and methylamine as precursors has preliminary been studied in order to confirm the adaptability of PDCs route to ALD technique. BN thin films have been grown onto flat substrate and it has been proven that tri(isopropylamino)borane vapor can infiltrate into electrospun polyacrylonitrile fibers.This work was carried out at University of Lyon and financially supported by the National Research Agency (project n° ANR-16-CE08-0021-01)

Cette thèse présente une étude expérimentale de l'impact de gouttes de fluides à seuil. Au-delà des applications (impression à jet d’encre solide, modélisation d’impact solide à grandes vitesses), cette étude permet de sonder le rôle de l'élasticité sur le comportement à temps court de ces fluides complexes. D'abord, nous nous sommes intéressés aux impacts sur une surface rigide. L'utilisation de fluides à seuil modèles (solutions concentrées d’argiles, micro-gel de Carbopol) et de surfaces d'impact variées (partiellement mouillante ou super-hydrophobe), révèle une grande variété de comportements, allant de l'étalement viscoplastique irréversible jusqu'à des déformations élastiques géantes. Un modèle minimal d'étalement inertiel, incluant une rhéologie élasto/viscoplastique, permet de décrire dans un cadre unique les principaux régimes observés. Au cours de cette étude, nous avons mis en évidence un phénomène spécifique avec le Carbopol : pour des grandes vitesses d'impact, on observe un étalement beaucoup plus grand sur des surfaces rugueuses hydrophobes que sur des surfaces lisses. Cette réduction apparente du frottement basal est discutée en termes de longueur de glissement et d'instabilité de « splash ». Enfin, nous avons étudié l’impact d'une goutte de fluide sur un sol constitué du même fluide, en utilisant un fluide à seuil transparent (Carbopol). La combinaison de lois d'échelle, d’expériences en « micro-gravité » et de mesures locales du champ de déformation montre que la dynamique du cratère transitoire est dominée par l’élasticité, même au-delà du seuil d’écoulement. Ces résultats pourraient avoir des implications dans le contexte des impacts de météorites en astrophysique. / This thesis presents an experimental study on the drop impact of yield-stress fluids. Beyond applications (solid ink-jet printing, lab modelling of high-speed collision of solids), this study offers a mean to probe the role of the elasticity on the short-time behaviour of these complex fluids. We have first studied drop impacts on solid rigid surfaces. Using different model yield-stress fluids (clay suspensions, Carbopol micro-gel) and impacted surfaces (partially wettable, super-hydrophobic), we have observed a rich variety of behaviours ranging from irreversible viscoplastic coating to giant elastic spreading and recoil. A minimal model of inertial spreading, including an elasto/viscoplastic rheology, allows explaining in a single framework the different regimes and scaling laws. In this study, we identified a specific phenomenon with Carbopol: for large impact velocities, the drop spreads much more on rough hydrophobic surfaces than on smooth surfaces. This apparent reduction of the basal friction is discussed in terms of slip length and splash instability. Endly, we investigated the impact of a drop onto a pool of the same fluid, using a transparent yield-stress fluid (Carbopol). The combination of scaling laws, micro-gravity experiments and local deformation measurements shows that the transient crater is dominated by elasticity, even beyond the flow threshold. These results could have implications for impact cratering in Planetary Sciences.