The purpose of the thesis is to study completeness of abstract spaces. In particular, we study completeness in partial metric spaces, partial metric type spaces, dislocated metric spaces, dislocated metric type spaces and symmetric spaces that are generalizations of metric spaces. It is well known that complete metric spaces have a wide range of applications. For instance, the classical Banach contraction principle is phrased in the context of complete metric spaces. Analogously, the Banach's xed point theorem and xed point results for Lipschitzian maps are discussed in this context, namely in, partial metric spaces and metric type spaces. Finally, xed point results are presented for symmetric spaces. / Geography / Ph. D. (Mathematics)

The design and optimization of entrained flow gasifiers is conducted more and more via computational fluid dynamics (CFD). A detailed resolution of single coal particles within such simulations is nowadays not possible due to computational limitations. Therefore the coal particle conversion is often represented by simple 0-D models. For an optimization of such 0-D models a precise understanding of the physical processes at the boundary layer and within the particle is necessary. In real gasifiers the particles experience Reynolds numbers up to 10000. However in the literature the conversion of coal particles is mainly regarded under quiescent conditions. Therefore an analysis of the conversion of single particles is needed. Thereto the computational fluid dynamics can be used. For the detailed analysis of single reacting particles under flow conditions a CFD model is presented. Practice-oriented parameters as well as features of the CFD model result from CFD simulations of a Siemens 200MWentrained flow gasifier. The CFD model is validated against an analytical model as well as two experimental data-sets taken from the literature. In all cases good agreement between the CFD and the analytics/experiments is shown. The numerical model is used to study single moving solid particles under combustion conditions. The analyzed parameters are namely the Reynolds number, the ambient temperature, the particle size, the operating pressure, the particle shape, the coal type and the composition of the gas. It is shown that for a wide range of the analyzed parameter range no complete flame exists around moving particles. This is in contrast to observations made by other authors for particles in quiescent atmospheres. For high operating pressures, low Reynolds numbers, large particle diameters and high ambient temperatures a flame exists in the wake of the particle. The impact of such a flame on the conversion of the particle is low. For high steam concentrations in the gas a flame appears, which interacts with the particle and influences its conversion. Furthermore the impact of the Stefan-flow on the boundary layer of the particle is studied. It is demonstrated that the Stefan-flow can reduce the drag coefficient and the Nusselt number for several orders of magnitude. On basis of the CFD results two new correlations are presented for the drag coefficient and the Nusselt number. The comparison between the correlations and the CFD shows a significant improvement of the new correlations in comparison to archived correlations. The CFD-model is further used to study moving single porous particles under gasifying conditions. Therefore a 2-D axis-symmetric system of non-touching tori as well as a complex 3-D geometry based on the an inverted settlement of monodisperse spheres is utilized. With these geometries the influence of the Reynolds number, the ambient temperature, the porosity, the intrinsic surface and the size of the radiating surface is analyzed. The studies show, that the influence of the flow on the particle conversion is moderate. In particular the impact of the flow on the intrinsic transport and conversion processes is mainly negligible. The size of the radiating surface has a similar impact on the conversion as the flow in the regarded parameter range. On basis of the CFD calculations two 0-D models for the combustion and gasification of moving particles are presented. These models can reproduce the results predicted by the CFD sufficiently for a wide parameter range.:List of Figures . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . IX List of Tables . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .XIII Nomenclature . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . XV Abstract . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . XIX 1 Introduction . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .1 1.1 State of the Art in Carbon Conversion Modeling . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 4 1.1.1 Combustion of Solid Particles . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 4 1.1.2 Gasification of Porous Particles . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 6 1.2 Classification of the Present Work . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .7 1.3 Overview of the Work . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .7 2 Basic Theory and Model Formulation . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 9 2.1 Geometry and Length Scales of Coal Particles . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .9 2.2 Conditions in a Siemens Like 200 MW Entrained Flow Gasifier . . . . . . . . . . . . . . . . . . . . 11 2.2.1 Velocity Field . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .12 2.2.2 Temperature Distribution . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 16 2.2.3 Particle Volume Fraction . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .19 2.3 Time Scales of the Physical Processes . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 20 2.4 Basic Assumptions . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .21 2.5 Conservation Equations . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 22 2.6 Gas Properties . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .26 2.7 Boundary Conditions . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 29 2.8 Numerics and Solution Strategy . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .30 2.9 Mesh and Domain . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .31 3 CFD-based Oxidation Modeling of a Non-Porous Carbon Particle . . . . . . . . . . . . . . . . . . . . .37 3.1 Chemical Reaction System for Combustion . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .37 3.1.1 Heterogeneous Reactions . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .37 3.1.2 Homogeneous Reactions . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .40 3.1.3 Comparison of the Semi-Global vs. Reduced Reaction Mechanisms for the Gas Phase . .41 3.2 Validation . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .43 3.2.1 Validation Against an Analytical Solution of the Two-Film Model . . . . . . . . . . . . . . . . . .43 3.2.2 Validation Against Experiments I . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 45 3.2.3 Validation Against Experiments II . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .49 3.3 Influence of Ambient Temperature and Reynolds Number . . . . . . . . . . . . . . . . . . . . . . . .51 3.4 Influence of Heterogeneous Kinetics . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 59 3.5 Influence of Atmosphere . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .61 3.6 Influence of Operating Pressure . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .66 3.7 Influence of Particle Diameter . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .70 3.8 The influence of Particle Shape . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 73 3.9 Impact of Stefan Flow on the Boundary Layer . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 80 3.9.1 Impact of Stefan Flow on the Drag Coefficient . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .83 3.9.2 Impact of Stefan Flow on the Nusselt and Sherwood Number . . . . . . . . . . . . . . . . . . . .85 3.10 Single-Film Sub-Model vs. CFD . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 90 3.11 Summary . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 96 4 CFD-based Numerical Modeling of Partial Oxidation of a Porous Carbon Particle . . . . . . . . . .99 4.1 Chemical Reaction System for Gasification . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 100 4.1.1 Heterogeneous Chemistry . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .100 4.1.2 Homogeneous Chemistry . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 101 4.2 Two-Dimensional Simulations . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 106 4.2.1 Geometry . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 106 4.2.2 Influence of Reynolds Number and Ambient Temperature . . . . . . . . . . . . . . . . . . . . . .109 4.2.3 Influence of Porosity and Internal Surface . . . . . . . .. . . . . . . . . . . . . . . . . . . . . . . . . 120 4.3 Comparative Three-Dimensional Simulations . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 126 4.3.1 Geometry . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .126 4.3.2 Results of the 3-D Calculations . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 127 4.4 Extended Sub-Model for Gasification . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .133 4.5 Summary . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .138 5 Conclusions . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .. . . . . . . . .141 5.1 Summary of This Work . . . . . . . . . . . . . . . . . . . . . . . . . .. . . . . . . . . . . . . . . . . . . . . . .141 5.2 Recommendations for Future Works . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 143 Bibliography . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .145 6 Appendix . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 157 6.1 Appendix I: Properties . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 157 6.2 Appendix II: Two-Film Model . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 158 6.3 Appendix III: Sub-Model for the Combustion of Solid Particles . . . . . . . . . . . . . . . . . . . . 160 6.4 Appendix IV: Sub-Model for the Gasification of Porous Particles . . . . . . . . . . . . . . . . . . . 161

The aim of this project has been to investigate whether there are correlations to be found between gut microbes and serum metabolites, which could be involved in the development of epilepsy. To do so, metabolomics data containing metabolites and metagenomics data containing bacteria have been integrated and used in a pipeline utilizing the software package DIABLO in R Studio. DIABLO stands for Data Integration Analysis for Biomarker discovery using Latent cOmponents and utilizes multi-block pls-da to integrate multiple omics data sets to find potential biomarkers. The results in this project are mainly divided into two groups, the first group being from taking samples at an early time point, where subjects have not yet developed symptoms of epilepsy and the second group being from taking samples at a late time point, where the subjects have developed epilepsy. To find biomarkers in the data used for the integration, two subgroups are of highest interest, namely subgroup PTE, which is the group that develops epilepsy symptoms after an induced trauma to the brain, as well as subgroup TBI which do not develop epilepsy symptoms after an induced trauma to the brain. Results from the early time point suggests that bacteria such as those from Phelethenecus, Christenselellales, Ventrimonas, Ruminococcaceae and Acetatifactor, as well as metabolites such as LPC 17:0, Indole and Indole-3-carboxyaldehyde might be of interest in finding biomarkers previous to the development of epilepsy after induced brain trauma.  Results from the late time point suggests that bacteria such as those from Muribaculaceae and Avidehalobacter, as well as metabolites such as Dioctyl sulfosuccinate, Canrenone, LPC 18:0, Uric acid, Arjunolic acid and Pseudouridine might be of interest in finding underlying mechanisms behind the existing condition of epilepsy. The hope is that findings in this paper might aid in future development of knowledge behind this disease as well as its underlying mechanisms.

O controle da extrusão apical durante a reintervenção endodôntica é essencial para o sucesso do novo tratamento. Nesse contexto, o presente estudo teve como objetivo comparar a quantidade de material sólido extruído na desobturação de canais radiculares variando-se a técnica de esvaziamento e o limite de obturação. Foram utilizados 40 incisivos inferiores previamente tratados divididos em dois grupos de acordo com o limite de obturação estabelecido. Cada grupo foi subdividido em dois subgrupos levando-se em conta a técnica de desobturação empregada; manual (subgrupos A1 e B1) e mecânico-rotatória com limas de Ni-Ti (Quantec LX) (subgrupos A2 e B2). O material sólido extruído foi coletado por meio do sistema de filtração Millipore, levado à secagem em dessecador de sílica e pesado em balança analítica de precisão. Os resultados obtidos foram submetidos a ANOVA para dois fatores de variação sendo em seguida empregado o Teste de Tukey (&#945; = 5%). A técnica de desobturação mecânico-rotatória produziu menor extrusão (0,66mg) que a manual (1,11mg), havendo diferença estatística significante entre elas (p < 0,05). Os canais preenchidos até o vértice radiográfico apresentaram maior quantidade de extrusão (1,38mg) do que os obturados 1 mm aquém do forame (0,39mg), observando-se diferença estatística significante entre eles (p < 0,05). A menor quantidade extrusão foi observada no subgrupo A2 (0,20mg), em que foi empregada a técnica rotatória de desobturação em canais obturados 1mm aquém do forame apical, sendo constatada diferença estatisticamente significante deste subgrupo com os demais (p < 0,05). A extrusão de material sólido durante a desobturação de canais radiculares é influenciado pela técnica empregada e pelo limite apical de obturação. / The apical extrusion control during the endodontic retreatment is essential for the success of the new treatment. The purpose of this study was to compare the quantity of solid apically extruded material during filling removal according the gutta-percha removal technique and root filling limit. Forty mandibular incisors with a single straight canal were selected. The canals were previously endodontically treated and then divided into two groups according the filling level. Each group was subdivided in two groups considering the retreatment technique: stainless steel hand files (subgroups A1 and B1) versus niquel-titanium rotatory instruments (subgroups A2 and B2). The extruded solid material was collected by Millipore filtration system, dried in silica desiccators and weighed in an eletrobalance. The results were analyzed using ANOVA with two variation factors and Tukey Test (&#945; = 5%). The niquel-titanium rotatory instruments produced less extrusion (0,66mg) than the stainless steel hand files (1,11mg), with significant statistical difference between them (p < 0,05). The canals filled until the radiographic apex showed larger amount of extruded material (1,38mg) than those filled 1 mm beyond the foramen (0,39mg). It was observed significant statistical difference between them (p < 0,05). The smaller extruded debris amount was observed in subgroup A2 (0,20mg), in which one the rotary technique was used to remove the gutta-percha of canals filled 1mm beyond the apical foramen. It was verified significant statistical difference of this subgroup with the other ones (p < 0,05). The extrusion of solid material during the gutta-percha removal is influenced by the technique as well as the apical filling limit.

O controle da extrusão apical durante a reintervenção endodôntica é essencial para o sucesso do novo tratamento. Nesse contexto, o presente estudo teve como objetivo comparar a quantidade de material sólido extruído na desobturação de canais radiculares variando-se a técnica de esvaziamento e o limite de obturação. Foram utilizados 40 incisivos inferiores previamente tratados divididos em dois grupos de acordo com o limite de obturação estabelecido. Cada grupo foi subdividido em dois subgrupos levando-se em conta a técnica de desobturação empregada; manual (subgrupos A1 e B1) e mecânico-rotatória com limas de Ni-Ti (Quantec LX) (subgrupos A2 e B2). O material sólido extruído foi coletado por meio do sistema de filtração Millipore, levado à secagem em dessecador de sílica e pesado em balança analítica de precisão. Os resultados obtidos foram submetidos a ANOVA para dois fatores de variação sendo em seguida empregado o Teste de Tukey (&#945; = 5%). A técnica de desobturação mecânico-rotatória produziu menor extrusão (0,66mg) que a manual (1,11mg), havendo diferença estatística significante entre elas (p < 0,05). Os canais preenchidos até o vértice radiográfico apresentaram maior quantidade de extrusão (1,38mg) do que os obturados 1 mm aquém do forame (0,39mg), observando-se diferença estatística significante entre eles (p < 0,05). A menor quantidade extrusão foi observada no subgrupo A2 (0,20mg), em que foi empregada a técnica rotatória de desobturação em canais obturados 1mm aquém do forame apical, sendo constatada diferença estatisticamente significante deste subgrupo com os demais (p < 0,05). A extrusão de material sólido durante a desobturação de canais radiculares é influenciado pela técnica empregada e pelo limite apical de obturação. / The apical extrusion control during the endodontic retreatment is essential for the success of the new treatment. The purpose of this study was to compare the quantity of solid apically extruded material during filling removal according the gutta-percha removal technique and root filling limit. Forty mandibular incisors with a single straight canal were selected. The canals were previously endodontically treated and then divided into two groups according the filling level. Each group was subdivided in two groups considering the retreatment technique: stainless steel hand files (subgroups A1 and B1) versus niquel-titanium rotatory instruments (subgroups A2 and B2). The extruded solid material was collected by Millipore filtration system, dried in silica desiccators and weighed in an eletrobalance. The results were analyzed using ANOVA with two variation factors and Tukey Test (&#945; = 5%). The niquel-titanium rotatory instruments produced less extrusion (0,66mg) than the stainless steel hand files (1,11mg), with significant statistical difference between them (p < 0,05). The canals filled until the radiographic apex showed larger amount of extruded material (1,38mg) than those filled 1 mm beyond the foramen (0,39mg). It was observed significant statistical difference between them (p < 0,05). The smaller extruded debris amount was observed in subgroup A2 (0,20mg), in which one the rotary technique was used to remove the gutta-percha of canals filled 1mm beyond the apical foramen. It was verified significant statistical difference of this subgroup with the other ones (p < 0,05). The extrusion of solid material during the gutta-percha removal is influenced by the technique as well as the apical filling limit.

International Telemetering Conference Proceedings / October 23-26, 2000 / Town & Country Hotel and Conference Center, San Diego, California / Bit errors often occur in a wireless communications link when impairments alter the transmitted signal. It is advantageous to be able to predict how well a system will tolerate transmission problems. This paper details laboratory performance measurements and comparisons in terms of evaluating configurations of a digital receiver for Feher patented Quadrature Phase Shift Keying (FQPSK-B) demodulation. The transmitted signal is subjected to calibrated levels of impairments while the receiver performance is monitored in real-time.

Digital competence used to be a confusing concept, until recently when some researchers coined a comprehensive definition of digital competence and formulated a conceptual framework in an SME context. However, the framework was only at a conceptual level and required to be tested with the empirics of a qualitative or quantitative study. By an abductive qualitative approach, this research explored existing theories on digital competence and formulated a new digital competence framework in Swedish manufacturing SME perspective. Moreover, with cross-sectional study design, this research explored the role of digital competence in the internationalization process of six Swedish manufacturing firms, which is unprecedented in academic literature. Our findings indicate that digital competence is an evolving concept which develops gradually with technological advancements and requires a combination of three integral components: i) Digital technologies (basic and advanced level digitalization), ii) Automation of organizational processes, iii) Human resources who have the latest digital skills and are duly motivated to use these skills. This research affirms that after attaining digital competence Swedish manufacturing SMEs can sustain a competitive advantage in their international markets and it successfully facilitates in the firm’s internationalization process. / Digital kompetens brukade vara ett förvirrande koncept fram till nyligen när vissa forskare utarbetade en omfattande definition av digital kompetens och formulerade en konceptuell ram i ett små och medelstora sammanhang. Ramverket var dock endast på en konceptuell nivå och krävdes att testas med empiriken i en kvalitativ eller kvantitativ studie. Genom ett abduktivt kvalitativt tillvägagångssätt undersökte denna forskning befintliga teorier om digital kompetens och formulerade en ny digital kompetensram inom svenskt tillverkningspolitiskt perspektiv. Vidare undersökte denna undersökning rollen som digital kompetens i internationaliseringsprocessen av sex svenska tillverkningsföretag, vilket är enastående i den akademiska litteraturen. Våra resultat tyder på att digital kompetens är ett utvecklande koncept som utvecklas gradvis med tekniska framsteg och kräver en kombination av tre integrerade komponenter: i) Digital teknik (grundläggande och avancerad digitalisering), ii) Automatisering av organisationsprocesser, iii) Personal som har de senaste digitala färdigheterna och är vederbörligen motiverade att använda dessa färdigheter. Den här forskningen bekräftar att svenska tillverkare små och medelstora företag efter att ha uppnått digital kompetens kan upprätthålla en konkurrensfördel på sina internationella marknader och framgångsrikt underlättar företagets internationaliseringsprocess.

A semigroup is simply a set with an associative binary operation; computational semigroup theory is the branch of mathematics concerned with developing techniques for computing with semigroups, as well as investigating semigroups with the help of computers. This thesis explores both sides of computational semigroup theory, across several topics, especially in the finite case. The central focus of this thesis is computing and describing maximal subsemigroups of finite semigroups. A maximal subsemigroup of a semigroup is a proper subsemigroup that is contained in no other proper subsemigroup. We present novel and useful algorithms for computing the maximal subsemigroups of an arbitrary finite semigroup, building on the paper of Graham, Graham, and Rhodes from 1968. In certain cases, the algorithms reduce to computing maximal subgroups of finite groups, and analysing graphs that capture information about the regular I-classes of a semigroup. We use the framework underpinning these algorithms to describe the maximal subsemigroups of many families of finite transformation and diagram monoids. This reproduces and greatly extends a large amount of existing work in the literature, and allows us to easily see the common features between these maximal subsemigroups. This thesis is also concerned with direct products of semigroups, and with a special class of semigroups known as Rees 0-matrix semigroups. We extend known results concerning the generating sets of direct products of semigroups; in doing so, we propose techniques for computing relatively small generating sets for certain kinds of direct products. Additionally, we characterise several features of Rees 0-matrix semigroups in terms of their underlying semigroups and matrices, such as their Green's relations and generating sets, and whether they are inverse. In doing so, we suggest new methods for computing Rees 0-matrix semigroups.

The study of cis-regulatory elements (CREs) will allow for increased understanding of regulation and lead to insight regarding the mechanisms governing growth, development, health, and disease. The aim of this study was to characterize the de novo in silico predictions of Arabidopsis CREs. Eight synthetic and 30 native promoter-constructs containing an eGFP/GUS reporter protein were generated for cold, genotoxic, heat, osmotic, and salt stress; the circadian clock; ABA signaling; root and epidermis tissue. Constructs were stably transformed into A. thaliana Col-0 and the effects of the CREs were evaluated by in planta stress or tissue assays using GUS expression levels. Results reveal a novel genotoxic element that specifically directs GUS expression in rosette leaves during genotoxic stress. Results also look promising for novel epidermis and root-specific elements. Results of these assays validate the de novo prediction pipeline's ability to identify novel and known CREs related to abiotic stress.

The study of cis-regulatory elements (CREs) will allow for increased understanding of regulation and lead to insight regarding the mechanisms governing growth, development, health, and disease. The aim of this study was to characterize the de novo in silico predictions of Arabidopsis CREs. Eight synthetic and 30 native promoter-constructs containing an eGFP/GUS reporter protein were generated for cold, genotoxic, heat, osmotic, and salt stress; the circadian clock; ABA signaling; root and epidermis tissue. Constructs were stably transformed into A. thaliana Col-0 and the effects of the CREs were evaluated by in planta stress or tissue assays using GUS expression levels. Results reveal a novel genotoxic element that specifically directs GUS expression in rosette leaves during genotoxic stress. Results also look promising for novel epidermis and root-specific elements. Results of these assays validate the de novo prediction pipeline's ability to identify novel and known CREs related to abiotic stress.