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Zelluläre Entscheidungen, wie z. B. die Differenzierung von T-Helferzellen (Th-Zellen) in spezialisierte Effektorlinien, haben großen Einfluss auf die Spezifität von Immunreaktionen. Solche Reaktionen sind das Ergebnis eines komplexen Zusammenspiels einzelner Zellen, die über kleine Signalmoleküle, so genannte Zytokine, kommunizieren. Die hohe Anzahl der Komponenten, sowie deren komplizierte und oft nichtlineare Interaktionen erschweren dabei die Vorhersage, wie bestimmte zelluläre Reaktionen erzeugt werden. Aus diesem Grund sind die globalen Auswirkungen der gezielten Beeinflussung einzelner Zellen oder spezifischer Signalwege nur unzureichend verstanden. So wirken beispielsweise etablierte Behandlungen von Autoimmunkrankheiten oft nur bei einem Teil der Patienten. Durch Einzelzellmethoden wie Live-Cell-Imaging, Massenzytometrie und Einzelzellsequenzierung, können Immunzellen heutzutage quantitativ auf mehreren Ebenen charakterisiert werden. Diese Ansammlung quantitativer Daten erlaubt die Formulierung datengetriebener Modelle zur Vorhersage von zellulären Entscheidungen, allerdings fehlen in vielen Fällen Methoden, um die verschiedenen Daten auf geeignete Weise zu integrieren und zu annotieren. Die vorliegende Arbeit befasst sich mit quantitativen Modellformulierungen für die Entscheidungsfindung von Zellen im Immunsystem mit dem Schwerpunkt auf Lymphozytenproliferation, -differenzierung und -tod. / Cellular decisions, such as the differentiation of T helper (Th) cells into specialized effector lineages, largely impact the direction of immune responses. Such population-level responses are the result of a complex interplay of individual cells which communicate via small signaling molecules called cytokines. The system's complexity, stemming not only from the number of components but also from their intricate and oftentimes non-linear interactions, makes it difficult to develop intuition for how cellular responses are actually generated. Not surprisingly, the global effects of targeting individual cells or specific signaling pathways through perturbations are poorly understood. For instance, common treatments of autoimmune diseases often work for some patients, but not for others. Recently developed methods such as live-cell imaging, mass cytometry and single-cell sequencing now enable quantitative characterization of individual immune cells. This accumulating wealth of quantitative data has laid the basis to derive predictive, data-driven models of immune cell behavior, but in many cases, methods to integrate and annotate the data in a way suitable for model formulation are missing. In this thesis, quantitative workflows and methods are introduced that allow to formulate data-driven models of immune cell decision-making with a particular focus on lymphocyte proliferation, differentiation and death.

No / The Rho family GTPases Cdc42 and Rac1 are critical regulators of the actin cytoskeleton and are essential for skin and hair function. Wiskott-Aldrich syndrome family proteins act downstream of these GTPases, controlling actin assembly and cytoskeletal reorganization, but their role in epithelial cells has not been characterized in vivo. Here, we used a conditional knockout approach to assess the role of neural Wiskott-Aldrich syndrome protein (N-WASP), the ubiquitously expressed Wiskott-Aldrich syndrome-like (WASL) protein, in mouse skin. We found that N-WASP deficiency in mouse skin led to severe alopecia, epidermal hyperproliferation, and ulceration, without obvious effects on epidermal differentiation and wound healing. Further analysis revealed that the observed alopecia was likely the result of a progressive and ultimately nearly complete block in hair follicle (HF) cycling by 5 months of age. N-WASP deficiency also led to abnormal proliferation of skin progenitor cells, resulting in their depletion over time. Furthermore, N-WASP deficiency in vitro and in vivo correlated with decreased GSK-3beta phosphorylation, decreased nuclear localization of beta-catenin in follicular keratinocytes, and decreased Wnt-dependent transcription. Our results indicate a critical role for N-WASP in skin function and HF cycling and identify a link between N-WASP and Wnt signaling. We therefore propose that N-WASP acts as a positive regulator of beta-catenin-dependent transcription, modulating differentiation of HF progenitor cells.

No / During development, multipotent progenitor cells establish tissue-specific programs of gene expression. In this paper, we show that p63 transcription factor, a master regulator of epidermal morphogenesis, executes its function in part by directly regulating expression of the genome organizer Satb1 in progenitor cells. p63 binds to a proximal regulatory region of the Satb1 gene, and p63 ablation results in marked reduction in the Satb1 expression levels in the epidermis. Satb1(-/-) mice show impaired epidermal morphology. In Satb1-null epidermis, chromatin architecture of the epidermal differentiation complex locus containing genes associated with epidermal differentiation is altered primarily at its central domain, where Satb1 binding was confirmed by chromatin immunoprecipitation-on-chip analysis. Furthermore, genes within this domain fail to be properly activated upon terminal differentiation. Satb1 expression in p63(+/-) skin explants treated with p63 small interfering ribonucleic acid partially restored the epidermal phenotype of p63-deficient mice. These data provide a novel mechanism by which Satb1, a direct downstream target of p63, contributes in epidermal morphogenesis via establishing tissue-specific chromatin organization and gene expression in epidermal progenitor cells.

Mouse embryonic stem cells (mESCs) can be maintained in a proliferative and undifferentiated state over many passages (self-renewal) while retaining the potential to give rise to every cell type of the organism (pluripotency). Autocrine FGF4/Erk signalling has been identified as a major stimulus for fate decisions and lineage commitment in these cells. Recent findings on serum-free culture conditions with specific inhibitors (known as 2i) demonstrate that the inhibition of this pathway reduces transcription factor heterogeneity and is vital to maintain ground state pluripotency of mESCs. We suggest a novel mathematical model to explicitly integrate FGF4/Erk signalling into an interaction network of key pluripotency factors (namely Oct4, Sox2, Nanog and Rex1). The envisaged model allows to explore whether and how proposed mechanisms and feedback regulations can account for different expression patterns in mESC cultures. We demonstrate that an FGF4/Erk-mediated negative feedback is sufficient to induce molecular heterogeneity with respect to Nanog and Rex1 expression and thus critically regulates the propensity for differentiation and the loss of pluripotency. Furthermore, we compare simulation results on the transcription factor dynamics in different self-renewing states and during differentiation with experimental data on a Rex1GFPd2 reporter cell line using flow cytometry and qRT-PCR measurements. Concluding from our results we argue that interaction between FGF4/Erk signalling and Nanog expression qualifies as a key mechanism to manipulate mESC pluripotency. In particular, we infer that ground state pluripotency under 2i is achieved by shifting stable expression pattern of Nanog from a bistable into a monostable regulation impeding stochastic state transitions. Furthermore, we derive testable predictions on altering the degree of Nanog heterogeneity and on the frequency of state transitions in LIF/serum conditions to challenge our model assumptions.

Long-time research of chronologically aging yeast populations of Saccharomyces cerevisiae laboratory strains revealed that yeasts are able to differentiate into specialized cell types. Differentiation of liquid cultures growing in glucose rich medium and differentiation of colonies growing on solid glycerol medium has been previously studied. These populations create two fractions of cells with diverse morphology which adapt their metabolism and physiology to enable a long-term survival of the yeast population in environment with limited nutritional potential. In this study, yeast subpopulations isolated from colonies growing on solid glucose medium and liquid cultures cultivated in glycerol medium were characterized. Newly isolated cell types were compared with already known cell types isolated from colonies and liquid cultures. Selected metabolic processes and stress resistance were analysed in studied populations. Based on previous studies of yeast differentiation, a spectrum of GFP-labelled marker proteins was choosen and production and localization of these marker proteins was monitored within yeast populations. Results of the analyses showed that type of medium and cultivation influence development and metabolism of each yeast cell type. Key words: Saccharomyces cerevisiae, BY4742, cell...

Thesis summary The process of B cell lymphogenesis in swine remains uncertain. Some reports indicate that pigs belong to a group of animal that use ileal Peyers's patches (IPP) for the generation of B cells while others point to the possibility that the bone marrow is functional throughout life. The functional subpopulations of B cells in swine are also unknown. Together with other ruminants, and also birds, γδ T cells in swine may account for >70% of all T cells which is in apparent contrast with humans and mice. The purpose of this thesis was to address these discrepancies and unresolved issues. The results disprove the existing paradigm that the IPP is primary lymphoid tissue and that B cells develop in IPP in an antigen-independent manner. On the other hand, it shows that bone marrow is fully capable of B cell lymphogenesis and remains active at least for the same period of time as it had been speculated for the IPP. This thesis also identified functionally different subsets of porcine peripheral B cells, and shows that CD21 molecules can be expressed in differential forms. Finally, this thesis identifies two lineages of γδ T cells that differ in many functional and phenotype features. This finding may explain why γδ T cells constitute of minority of lymphocytes in circulation of humans and mice.

A β2-glicoproteína I (β2GPI) é uma proteína de fase aguda, produzida principalmente no fígado e intestino. Os efeitos dessa proteína sobre células mononucleares foram investigados tanto em monócitos humanos de sangue periférico quanto em células promonocíticas humanas da linhagem celular ATCC THP-1. As correlações entre sua concentração plasmática e a intensidade da inflamação sistêmica foram avaliadas em humanos e em um modelo experimental de infecção sistêmica, em ratos. Nenhum efeito da β2GPI foi observado sobre a resposta oxidativa de monócitos de sangue periférico durante a fagocitose de zymosan opsonisado ou de S. aureus, analisada respectivamente por quimiluminescência amplificada por luminol ou por citometria de fluxo. A β2GPI estimulou a viabilidade celular e estimulou a diferenciação dos promonócitos. As células THP-1 tratadas com β2GPI apresentaram adesão aumentada a placas de cultura bem como expressão aumentada de CD54 e CD14. A suplementação com β2GPI foi suficiente para manter a proliferação das células THP-1 em cultura sem a adição de soro por 72h. Não houve correlações entre a concentração plasmática da β2GPI e indicadores clínicos da resposta inflamatória aguda em pacientes sépticos. A concentração da β2GPI não correlacionou com as concentrações plasmáticas de IL-8, SAA e PCR, que foram encontradas elevadas no sangue de pacientes com sepse. A variação da concentração plasmática de β2GPI foi um fenômeno muito precoce no modelo experimental de sepse e translocação bacteriana. Nas primeiras três horas após a indução da sepse endovenosa, a concentração plasmática de β2GPI diminuiu de forma dependente da intensidade de infecção. Sugere-se que efeitos muito precoces de compartimentalização associados ao sangue portal medeiem esta regulação. As concentrações mais baixas de β2GPI foram observadas nos animais expostos à translocação bacteriana através da mucosa intestinal, associada a uma condição inflamatória leve. A derivação da linfa preveniu completamente a diminuição da concentração plasmática de β2GPI. Em conjunto, os resultados revelaram a relevância combinada de via e de intensidade da infecção para o controle da concentração plasmática de β2GPI no início na resposta inflamatória aguda. / The β2-glycoprotein I (β2GPI) is an acute phase protein, produced mainly in the liver and intestine. The effects of this protein upon mononuclear cells were investigated both in monocytes from human peripheral blood, and in the human promonocytic cells from the ATCC THP-1 cell line. The correlations between its plasma concentration and systemic inflammation intensity were evaluated in humans and in ad experimental model of systemic infection in rats. No β2GPI effects were observed upon the oxidative response of blood monocytes during the phagocytosis of opsonized zymosan or S. aureus as analysed by luminol amplified chemiluminescence and flow cytometry. β2GPI enhanced the cellular viability and stimulated the differentiation of the promonocytes. The THP-1 cells treated with β2GPI presented increased adhesion to the plastic of cell culture plates as well as increased expression of CD54 and CD14 antigens. The supplementation with β2GPI was sufficient to support the proliferation of THP-1 cells in serum free culture conditions for 72 h. There were no correlations between the β2GPI plasma concentration and clinical parameters of the acute inflammatory response in septic patients. The β2GPI concentrations didn\'t correlated with the plasma concentrations of IL-8, SAA and C reactive protein, despite these substances were found increased in the blood of patients with sepsis. The β2GPI plasma concentration response was a very early phenomenon in the experimental sepsis and bacterial translocation model. The β2GPI concentration decreased within the first 3h after endovenous sepsis induction, depending on the infection intensity. Very early compartment effects associated with the portal blood are suggested to mediate such regulation. The lowest β2GPI concentrations were found in the animals exposed to bacterial translocation through the intestinal mucosa, associated with a mild inflammatory condition. The lymph derivation completely prevented the plasma β2GPI decrease. Taken together, the results revealed the relevance of both the infection route and intensity to the control of plasma β2GPI concentrations during the acute phase response.