Unlike desert rodents from North America, Allenby’s gerbil (Gerbillus andersoni allenbyi) from the Negev Desert, Israel has evolved with snakes that do not have heat-sensitive sensory pits that enhance night vision. Does this history affect their ability to assess and respond to a snake that has this ability? As a test, we exposed gerbils to risk of predation from various predators, including snakes, owls, and foxes. The snakes included the Saharan horned viper (Cerastes cerastes) and the sidewinder rattlesnake (Crotalus cerastes). The former snake lacks sensory pits and shares a common evolutionary history with the gerbil. The latter snake, while convergent evolutionarily on the horned viper, has sensory pits and no prior history with the gerbil. The gerbils exploited depletable resource patches similarly, regardless of snake species and moon phase. While the gerbils did not respond to the novel snake as a greater threat than their familiar horned viper, the gerbils were cognizant that the novel predator was a threat. In response to both snakes, giving-up densities (GUDs; the amount of food left in a resource patch following exploitation) of the gerbils were higher in the bush than open microhabitat. In response to moonlight, GUDs were higher on full than on the new moon. Based on GUDs, the gerbils responded most to the risk of predation from the red fox, least from the two snake species, and intermediate for the barn owl. Keywords:

L’évolution convergente des formes de croissance est un phénomène fondamental reliant l’écologie et l’évolution des plantes. Remarquablement illustré dans plusieurs systèmes insulaires, ce phénomène n’a jamais été identifié en Nouvelle-Calédonie, pourtant connue pour la richesse et l’originalité de sa flore. Par une approche combinant architecture des plantes, traits fonctionnels, taxonomie, phylogénie et données environnementales, cette thèse analyse l’histoire évolutive de la monocaulie, une forme de croissance mal connue, en Nouvelle-Calédonie. Les monocaules sont des plantes autoportantes ligneuses dont les fonctions majeures sont assurées par une seule tige apparente. En Nouvelle-Calédonie, elles sont représentées par 182 espèces dicotylédones appartenant à 41 genres et 30 familles et sont gravement menacées d’extinction. L’évolution répétée de la monocaulie en Nouvelle-Calédonie, issue d’au moins 31 événements d’apparition, est l’un des cas les plus remarquables de convergence en milieu insulaire. Dans le genre Atractocarpus, la monocaulie est apparue récemment deux à trois fois via diverses réductions des branches en inflorescences, montrant l’importance des processus hétérochroniques dans l’évolution des formes de croissance. La monocaulie est fortement corrélée à plusieurs traits démontrant des contraintes majeures dans la coordination fonctionnelle. L’évolution de la monocaulie est fortement associée aux forêts denses humides et au substrat ultramafique, et semble avoir contribué à la diversification des lignées par des phénomènes de partitionnement de niche. La remarquable convergence de la monocaulie en Nouvelle-Calédonie peut s’expliquer par quatre hypothèses majeures liées (i) à la structure particulière des forêts denses humides (en lien avec les cyclones) favorisant l’exploration unidirectionnelle de l’espace, (ii) aux contraintes édaphiques liées aux substrats ultramafiques favorisant la paupérisation architecturale, (iii) à l’absence historique de grands brouteurs, auxquels les monocaules sont particulièrement sensibles, et (iv) à la persistance des forêts denses humides lors des épisodes glaciaires (servant de refuges pour ces espèces sensibles) et leur expansion post-glaciaire (fournissant de nombreuses opportunités écologiques). / The convergent evolution in growth habit is a fundamental phenomenon linking plant ecology and evolution. Remarkably illustrated in island biotas, this phenomenon has never been identified in the original and megadiverse New Caledonian biodiversity hotspot. Through an approach combining plant architecture, functional traits, taxonomy, phylogeny and environmental data, this thesis analyses the evolutionary history of the scarcely known monocaulous growth habit in New Caledonia. Monocauls are self-supporting woody plants whose cardinal functions rely on a single visible stem. In New Caledonia, they are represented by 182 dicotyledonous species belonging to 41 genera and 30 families and are critically endangered. The repeated evolution of the monocaulie in New Caledonia, resulting from at least 31 independent events, is one of the most remarkable cases of convergence in insular environments. In the genus Atractocarpus (Rubiaceae), monocauly evolved recently two to three times through branch reductions into inflorescences, emphasizing the importance of heterochronic processes in the evolution of growth habit. Monocauly is strongly correlated with several traits illustrating major constraints in functional coordination. The evolution of monocauly is strongly associated with rainforests and ultramafic substrate, and seems to have contributed to the diversification of lineages by niche partitioning. The remarkable convergence toward monocauly in New Caledonia can be explained by four major hypotheses: (i) the structural features of rainforests (related to cyclone frequency and intensity) favoring unidirectional exploration of space, (ii) the edaphic constraints associated with ultramafic substrate favoring architectural pauperization, (iii) the historical absence of large native browsers to which monocauls are particularly sensitive, and (iv) the persistence of rainforest during – and spread-out after – glacial episodes that served as refugia and further provided ecological opportunities.

As plantas têm diversos modos de resolver problemas como a escassez de recursos, o ataque de herbívoros ou a perda de água. O modo como uma planta resolve um desses problemas pode ser considerado uma tática e o conjunto dessas táticas constitui uma estratégia ecológica. As estratégias só são possíveis porque as plantas têm uma série de atributos que têm um efeito direto no desempenho ecológico dessas plantas. Esses atributos funcionais, portanto, refletem as estratégias ecológicas das espécies. Com base nessa lógica, descrevemos as 157 espécies de árvore dominantes de uma floresta de terra firme da Amazônia Central segundo treze atributos funcionais (foliares, vegetativos e regenerativos). Nosso objetivo era descomplicar a ecologia de florestas tropicais, até então muito focada na identidade das espécies. Como essas florestas têm muitas espécies e a densidade dessas espécies é muito baixa, os padrões de composição de espécies das comunidades são muito complexos e pouco claros. Com a mudança do foco para a diversidade de estratégias, conseguimos desvendar um padrão interessante de dominância de tipos de estratégia: apesar de haver onze tipos diferentes na floresta estudada, 61% das espécies são de um só tipo. Além de ter o maior número de espécies, o tipo 1 respondeu por 52% da biomassa vegetal da floresta, o que indica que essa é a estratégia ótima. No entanto, como a dominância relativa não varia muito entre as espécies, é possível que o benefício gerado pela adoção da estratégia ótima seja compensado pelo número de espécies que adotam essa estratégia. Concluímos que os padrões encontrados na distribuição das dominâncias entre as espécies e entre os tipos são resultado principalmente das peculiaridades do conjunto de espécies, em especial a grande quantidade de espécies dos tipos 1 e 2. Mas como tantas espécies parecidas podem ter se originado? Para responder essa pergunta, testamos três hipóteses: 1) a taxa de especiação foi maior do que a taxa de divergência ecológica; 2) as espécies convergiram recentemente ou evoluíram paralelamente; e 3) razões alométricas ou demandas conflitantes entre os atributos restringiram a diversidade de estratégias. Encontramos evidências parciais que corroboram essas três hipóteses. Como a diversidade filogenética foi menor do que a diversidade ecológica, as espécies estudadas podem ser fruto de especiação recente, o que é compatível com a teoria dos refúgios. Segundo essa teoria, as espécies teriam se formado em refúgios do Pleistoceno durante as glaciações, o que deve ter proporcionado altas taxas de especiação alopátrica, não necessariamente acompanhada por divergência ecológica. Por outro lado, o efeito positivo do sinal filogenético na diversidade de estratégias revela que os antepassados das espécies atuais eram mais diferentes entre si do que as espécies atuais. Isso indica que houve uma convergência recente de estratégias, o que está de acordo com a hipótese do Lago Amazonas, que cobriu a área estudada até o início do Pleistoceno. O solo rico em silte da área estudada reforça a suspeita de que o leito desse lago deve ter fornecido uma ótima oportunidade ecológica para as espécies de terra firme. Finalmente, encontramos evidência de que a diversidade das estratégias ligadas aos atributos foliares é severamente limitada por demandas conflitantes e razões alométricas. / Plants have several ways to solve their problems such as resource limitation, herbivory damage or water loss. How a plant solves one of these problems can be considered a tactic and all the tactics together constitutes an ecological strategy. The strategies are possible only because plants have a series of traits that directly affect ecological performance of these plants. These functional traits, therefore, reflect the ecological strategies of species. Based on this rationale, we described the 157 dominant tree species in a terra firme forest of Central Amazon according to thirteen functional traits (among leaf, vegetative and regenerative traits). Our goal was to simplify the ecology of tropical forests, so far focused on species identity. Since these forests have a lot of species that are in general very rare, the patterns of species composition of these communities are very complex and unclear. By shifting focus to diversity of strategies, instead identities, we unveiled an interesting pattern of dominance among the strategy types: Although there are eleven different types of strategies in the forest studied, 61% of the species were of only one type. In addition to a greater number of species, only one type responded by 52% of the tree biomass of the forest sampled, which indicates that this is the optimal strategy. However, as the dominance does not vary considerably between species, it is possible that the benefit generated by the use of the optimal strategy is offset by the number of species who also use this strategy. We conclude that the neutral pattern found in the distribution of dominances among species and the dominance pattern found among the types are mainly the result of peculiarities of the species set, in particular the large number of the two most common strategies. But how so many similar species can have been originated? To answer to this question, we tested three hypotheses: 1) the rate of speciation was greater than the rate of ecological divergence; 2) species converged recently or evolved parallelly; and 3) allometric relations or tradeoffs between traits restricted the diversity of strategies. We found evidences that partially support these three hypotheses. As phylogenetic diversity was lower than ecological diversity, it is possible that the species studied resulted from recent speciation, which is compatible with the refuge theory. According to this theory, several species would have originated in Pleistocene refuges during the glaciations, which might have enhanced rates of allopatric speciation that was not necessarily followed by ecological divergence. On the other hand, the positive effect of phylogenetic signal in strategy diversity reveals that current species ancestors were ecologically more different from each other than current species are. This indicates that there was a recent convergence of strategies, which is consistent with the hypothesis of Lake Amazonas, which covered the area studied until the early Pleistocene. The large relative amount of silt in the soil of the studied area strengthens the suspect that the bed of this Lake should have provided a great ecological opportunity for species that were adapted to drier and poorer soils. Finally, we found evidence that only the diversity of strategies linked to leaf traits is severely limited by tradeoffs and allometric relations.

The group of pleurocarpous mosses comprises approximately 5000 species, which corresponds to about half of all mosses. The pleurocarpous mosses (i.e. “the Core Pleurocarps”) form a monophylum, which consists typically of perennial mosses with creeping stems and abundant lateral branches. In pleurocarpous mosses the archegonium and thus also sporophyte development is restricted to the apices of short, specialized lateral branches, in contrast to most other mosses, where archegonia and sporophytes develop terminally on the main axis (acrocarpous) or on major branches (cladocarpous). Traditionally, pleurocarpous mosses have been divided into three orders based mainly on their sporophytic characters. Brotherus described the Neckeraceae in 1925 and placed it into the Leucodontales, later the family has alternatively been divided into two or three separate families: the Thamnobryaceae, the Neckeraceae and the Leptodontaceae. These families have been placed even in different orders (Neckeraceae and Leptodontaceae among the leucodontalean mosses and Thamnobryaceae among hypnalean mosses) according to their peristome structure and the grade of peristome reduction. A growing amount of evidence indicates that a grouping based on sporophytic characters is artificial and based on convergent evolution. According to the latest phylogenetic studies of pleurocarpous mosses, based on molecular data, the Neckeraceae belong to the order Hypnales and share a sister group relationship with the Lembophyllaceae. In the most recent comprehensive classification 28 genera were included in the Neckeraceae family. This classification was based on both morphological and molecular data, but done with limited taxon sampling that did not cover all species of the family. Some previous studies based on molecular data have challenged the family concept of the Neckeraceae, indicating the need for a revision of the family. Here the family concept of the Neckeraceae is revisited, the closest relatives of the family are resolved and its position within pleurocarpous mosses is shown. In addition, new insights into the morphological evolution of the family are provided. Previous phylogenetic studies indicated that branch lengths among pleurocarpous mosses are usually extremely short. Therefore we chose to use mainly non-coding DNA sequences from rapidly evolving DNA regions. The phylogenetic reconstructions are based on extensive sequence data from all genomes: plastid trnS-trnF and rpl16, nuclear ITS1 & 2 and mitochondrial nad5. Both parsimony (PAUP and PRAP2) and Bayesian statistics (MrBayes) were employed for phylogenetic reconstructions. In order to use the information provided by length mutations indels were included in the analyses as binary data using a simple indel coding approach. No severe conflicts appeared between the different methods used, but the indel coding affected the support values of the inferred topologies. Therefore, all support values resulting from different methods are shown along the phylogenetic trees. The morphological features are studied and synapomorphies for each clade formed in the phylogenetic analyses are interpreted. A new delimitation of the family makes it necessary to reconsider the relevance of the morphological description and the morphological features characteristic of the family need to be reconsidered. Due to new groupings, some changes in the morphological circumscriptions of the genera are necessary, resulting in two new genera and several new combinations. Chapter 1 gives a broad overview of the relationships of the pleurocarpous mosses and shows the need for changes in the definition of genera, families and the corresponding nomenclature in this group. Chapter 2 is a population genetic study on the genus Thamnobryum. The main aim of this chapter is to test the species concept in Thamnobryum that are endemic to strictly restricted regions showing only minor differences in the morphological features in comparison to some more common species. In Chapter 3 the monophyly of the Neckeraceae is tested. In addition, in this chapter the ancestral character states of some morphological characters within the Neckeraceae are reconstructed. Chapters 4 and 5 resolve the genus composition and the relationships within the family in more detail. The results of this thesis show that the Neckeraceae need re-circumscription; this includes changes in the genus composition. The Lembophyllaceae is confirmed to be the sister group of the Neckeraceae. In addition to the new phylogeny, the potential evolution of several characters as a result of environmental selection pressures is analyzed. From the ancestral state reconstructions made (using BayesTraits) for both the habitat and a selection of morphological characters, character state distributions and habitat shift appear congruent, peristome reduction being a good example. However, some character states do not correlate with the habitat, suggesting very complex evolutionary patterns underlying these morphological characters. Many widely distributed genera that are composed of several species and seem to be morphologically coherent (Echinodium, Homalia, Thamnobryum, partly Neckera), are shown in this thesis to be polyphyletic. They are replaced by smaller, geographically more restricted genera that at least in some cases (e.g. Thamnomalia, Homalia s.str., Neckera s.str.) seem to form morphologically heterogeneous genera. In other words, morphology can be misleading in the family Neckeraceae even at the genus level and convergent evolution in both morphological and sequence level characters are common within the family. Special habitat conditions have been shown to result in similar morphological structures also in several other moss groups. This kind of convergent evolution occurs in aquatic mosses, and seems to have occurred among the neckeraceous species Thamnobryum alopecurum and its allies. However, similar morphological structure in similar aquatic habitats can also be due to true phylogenetic relationships as is the case within the Neckeraceae for Handeliobryum sikkimense and Hydrocryphae wardii, or the members of Touwia. The geographical grouping seems to be more strongly correlated with the phylogenetic grouping than thought before.

As plantas têm diversos modos de resolver problemas como a escassez de recursos, o ataque de herbívoros ou a perda de água. O modo como uma planta resolve um desses problemas pode ser considerado uma tática e o conjunto dessas táticas constitui uma estratégia ecológica. As estratégias só são possíveis porque as plantas têm uma série de atributos que têm um efeito direto no desempenho ecológico dessas plantas. Esses atributos funcionais, portanto, refletem as estratégias ecológicas das espécies. Com base nessa lógica, descrevemos as 157 espécies de árvore dominantes de uma floresta de terra firme da Amazônia Central segundo treze atributos funcionais (foliares, vegetativos e regenerativos). Nosso objetivo era descomplicar a ecologia de florestas tropicais, até então muito focada na identidade das espécies. Como essas florestas têm muitas espécies e a densidade dessas espécies é muito baixa, os padrões de composição de espécies das comunidades são muito complexos e pouco claros. Com a mudança do foco para a diversidade de estratégias, conseguimos desvendar um padrão interessante de dominância de tipos de estratégia: apesar de haver onze tipos diferentes na floresta estudada, 61% das espécies são de um só tipo. Além de ter o maior número de espécies, o tipo 1 respondeu por 52% da biomassa vegetal da floresta, o que indica que essa é a estratégia ótima. No entanto, como a dominância relativa não varia muito entre as espécies, é possível que o benefício gerado pela adoção da estratégia ótima seja compensado pelo número de espécies que adotam essa estratégia. Concluímos que os padrões encontrados na distribuição das dominâncias entre as espécies e entre os tipos são resultado principalmente das peculiaridades do conjunto de espécies, em especial a grande quantidade de espécies dos tipos 1 e 2. Mas como tantas espécies parecidas podem ter se originado? Para responder essa pergunta, testamos três hipóteses: 1) a taxa de especiação foi maior do que a taxa de divergência ecológica; 2) as espécies convergiram recentemente ou evoluíram paralelamente; e 3) razões alométricas ou demandas conflitantes entre os atributos restringiram a diversidade de estratégias. Encontramos evidências parciais que corroboram essas três hipóteses. Como a diversidade filogenética foi menor do que a diversidade ecológica, as espécies estudadas podem ser fruto de especiação recente, o que é compatível com a teoria dos refúgios. Segundo essa teoria, as espécies teriam se formado em refúgios do Pleistoceno durante as glaciações, o que deve ter proporcionado altas taxas de especiação alopátrica, não necessariamente acompanhada por divergência ecológica. Por outro lado, o efeito positivo do sinal filogenético na diversidade de estratégias revela que os antepassados das espécies atuais eram mais diferentes entre si do que as espécies atuais. Isso indica que houve uma convergência recente de estratégias, o que está de acordo com a hipótese do Lago Amazonas, que cobriu a área estudada até o início do Pleistoceno. O solo rico em silte da área estudada reforça a suspeita de que o leito desse lago deve ter fornecido uma ótima oportunidade ecológica para as espécies de terra firme. Finalmente, encontramos evidência de que a diversidade das estratégias ligadas aos atributos foliares é severamente limitada por demandas conflitantes e razões alométricas. / Plants have several ways to solve their problems such as resource limitation, herbivory damage or water loss. How a plant solves one of these problems can be considered a tactic and all the tactics together constitutes an ecological strategy. The strategies are possible only because plants have a series of traits that directly affect ecological performance of these plants. These functional traits, therefore, reflect the ecological strategies of species. Based on this rationale, we described the 157 dominant tree species in a terra firme forest of Central Amazon according to thirteen functional traits (among leaf, vegetative and regenerative traits). Our goal was to simplify the ecology of tropical forests, so far focused on species identity. Since these forests have a lot of species that are in general very rare, the patterns of species composition of these communities are very complex and unclear. By shifting focus to diversity of strategies, instead identities, we unveiled an interesting pattern of dominance among the strategy types: Although there are eleven different types of strategies in the forest studied, 61% of the species were of only one type. In addition to a greater number of species, only one type responded by 52% of the tree biomass of the forest sampled, which indicates that this is the optimal strategy. However, as the dominance does not vary considerably between species, it is possible that the benefit generated by the use of the optimal strategy is offset by the number of species who also use this strategy. We conclude that the neutral pattern found in the distribution of dominances among species and the dominance pattern found among the types are mainly the result of peculiarities of the species set, in particular the large number of the two most common strategies. But how so many similar species can have been originated? To answer to this question, we tested three hypotheses: 1) the rate of speciation was greater than the rate of ecological divergence; 2) species converged recently or evolved parallelly; and 3) allometric relations or tradeoffs between traits restricted the diversity of strategies. We found evidences that partially support these three hypotheses. As phylogenetic diversity was lower than ecological diversity, it is possible that the species studied resulted from recent speciation, which is compatible with the refuge theory. According to this theory, several species would have originated in Pleistocene refuges during the glaciations, which might have enhanced rates of allopatric speciation that was not necessarily followed by ecological divergence. On the other hand, the positive effect of phylogenetic signal in strategy diversity reveals that current species ancestors were ecologically more different from each other than current species are. This indicates that there was a recent convergence of strategies, which is consistent with the hypothesis of Lake Amazonas, which covered the area studied until the early Pleistocene. The large relative amount of silt in the soil of the studied area strengthens the suspect that the bed of this Lake should have provided a great ecological opportunity for species that were adapted to drier and poorer soils. Finally, we found evidence that only the diversity of strategies linked to leaf traits is severely limited by tradeoffs and allometric relations.

Understanding the nature of adaptive evolution has been the recent focus of research detailing the genetic basis of adaptation and theoretical work describing the mechanics of adaptive evolution. Nevertheless, key questions regarding the process of adaptive evolution remain. Ultimately, a detailed description of the ecological context, evolutionary history, and genetic basis of adaptations is required to advance our understanding of adaptive evolution. To address some of the contemporary issues surrounding adaptive evolution, I examine phenotypic and genotypic changes in a snake feeding adaptation. Adaptations can arise through fixation of novel mutations or recruitment of existing variation. Some populations of the garter snakes Thamnophis sirtalis, T. couchii, and T. atratus possess elevated resistance to tetrodotoxin (TTX), the lethal toxin of their newt prey. I show that TTX resistance has evolved independently through amino acid changes at critical sites in a voltage-gated sodium channel protein (Nav1.4) targeted by TTX. Thus, adaptive evolution has occurred multiple times in garter snakes via de novo acquisition of beneficial mutations. Detailing the genetic basis of adaptive variation in natural populations is the first step towards understanding the tempo and mode of adaptive evolution. I evaluate the contribution of Nav1.4 alleles to TTX resistance in two garter snake species from central coastal California. Allelic variation in Nav1.4 explains 29% and 98% of the variation in TTX resistance in T. atratus and T. sirtalis, respectively, demonstrating that Nav1.4 is a major effect locus. The simple genetic architecture of TTX resistance in garter snakes may significantly impact the dynamics of trait change and coevolution. Patterns of convergent evolution are cited as some of the most compelling examples of the strength of natural selection in shaping organismal diversity. Yet repeated patterns may tell us as much about the constraints that restrict evolution as about the importance of natural selection. I present data on convergent molecular adaptations in parallel arms races between diverse snakes and amphibians from across the globe. Six snake species that prey on TTX bearing amphibians have independently acquired amino acid changes in Nav1.4. The derived mutations are clustered in two portions of the gene, often involving the same sites and substitutions. While a number of amino acid changes can make Nav1.4 insensitive to TTX, most of these negatively impact or abolish the ion-conducting function of the protein. Thus, intramolecular pleiotropy likely prevents most replacements from becoming fixed and imposes limits on protein evolution.

No description available.

These studies compare neurotransmitter localization and the behavioral functions of homologous neurons in nudibranch molluscs to determine the types of changes that might underlie the evolution of species-specific behaviors. Serotonin (5-HT) immunohistochemistry in eleven nudibranch species indicated that certain groups of 5 HT-immunoreactive neurons, such as the Cerebral Serotonergic Posterior (CeSP) cluster, are present in all species. However, the locations and numbers of many other 5 HT-immunoreactive neurons were variable. Thus, particular parts of the serotonergic system have changed during the evolution of nudibranchs. To test whether the functions of homologous neurons are phylogenetically variable, comparisons were made in species with divergent behaviors. In Tritonia diomedea, which crawls and also swims via dorsal-ventral body flexions, the CeSP cluster includes the Dorsal Swim Interneurons (DSIs). It was previously shown that the DSIs are members of the swim central pattern generator (CPG); they are rhythmically active during swimming and, along with their neurotransmitter 5-HT, are necessary and sufficient for swimming. It was also known that the DSIs excite efferent neurons used in crawling. DSI homologues, the CeSP-A neurons, were identified in six species that do not exhibit dorsal-ventral swimming. Many physiological characteristics, including excitation of putative crawling neurons were conserved, but the CeSP A neurons were not rhythmically active in any of the six species. In the lateral flexion swimmer, Melibe leonina, the CeSP-A neurons and 5-HT, were sufficient, but not necessary, for swimming. Thus, homologous neurons, and their neurotransmitter, have functionally diverged in species with different behaviors. Homologous neurons in species with similar behaviors also exhibited functional divergence. Like Melibe, Dendronotus iris is a lateral flexion swimmer. Swim interneuron 1 (Si1) is in the Melibe swim CPG. However, its putative homologue in Dendronotus, the Cerebral Posterior ipsilateral Pedal (CPiP) neuron, was not rhythmically active during swim-like motor patterns, but could initiate such a motor pattern. Together, these studies suggest that neurons have changed their functional relationships to neural circuits during the evolution of species-specific behaviors and have functionally diverged even in species that exhibit similar behaviors.

Made available in DSpace on 2014-06-11T19:26:07Z (GMT). No. of bitstreams: 0 Previous issue date: 2008-10-07Bitstream added on 2014-06-13T19:53:59Z : No. of bitstreams: 1 gualberto_af_me_jabo.pdf: 464930 bytes, checksum: 799ea2a9f048c84fac80100f93c28e4f (MD5) / Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES) / O veado-mateiro (Mazama americana) é a maior espécie do Gênero Mazama, e encontra distribuído geograficamente por quase toda a região neotropical. Animais originários do Estado de Rondônia têm apresentado importantes diferenças citogenéticas em relação ao padrão de outras populações, o que suscita necessidade de estudos mais aprofundados para definição da sua posição filogenética. O presente estudo objetivou identificar as diferentes populações de veado-mateiro desta região, verificando a existência de mais de uma espécie no local. Para tanto, foram obtidos 51 fragmentos de tecido de animais caçados por indígenas e pela população local em todas as regiões do Estado dos quais 33 tiveram seu DNA extraídos, amplificados (região de 480pb do citocromo b) e seqüenciados de forma satisfatória. Estas seqüências foram alinhadas e comparadas, gerando 21 haplótipos que se encontram distribuídos de forma aleatória pelas diversas regiões de coleta. Estes haplótipos serviram de base para a elaboração de redes de distância e árvores filogenéticas que quando analisadas sugeriram a existência de espécies crípticas dentro do que hoje se denomina Mazama americana no Estado de Rondônia. / The red brocket deer is the largest species of Mazama genus and it is distributed in almost all Neotropical regions. Individuals originated from Rondônia state in Brazil have been presented important cytogenetic differences when compared with populations of other regions of country; however more studies are necessary to define correct phylogenetic position of species. The objective of present study was performed the identification of different populations of red brocket deer from Rondônia state by verification of occurrence of more than one species on mentioned region. For this, 51 fragments of tissues from hunted animals were obtained with Indians and local people of all regions of Rondônia state. In 31 fragments of tissues the DNA was successful extract, amplified (480 bp region of cytochrome b) and sequenced. These sequences were aligned and compared creating 21 haplotypes, which are distributed in a randomly way thru the different regions of sampling. The haplotypes were used to elaborate distance nets and phylogenetic trees, which when analyzed suggested the existence of cryptic species on Mazama americana species that occurs in Rondônia state.

Made available in DSpace on 2014-06-11T19:26:07Z (GMT). No. of bitstreams: 0 Previous issue date: 2008-05-27Bitstream added on 2014-06-13T19:33:20Z : No. of bitstreams: 1 carnelossi_eag_me_jabo.pdf: 5963862 bytes, checksum: c9072ade5521cd6b029cd77e62872e7a (MD5) / Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP) / O veado-mateiro (Mazama americana) possui uma ampla distribuição geográfica na região neotropical. Estudos citogenéticos com a espécie revelam variações cromossômicas (citótipos) que apontam sua divisão em outras espécies. Neste trabalho, foram examinadas as relações filogenéticas desta espécie, analisando parte dos genes mitocondriais (citocromo-b e região controladora D-loop), dos genes nucleares (Beta e Kapa caseínas e do exon I do gene IRBP) e um fragmento do gene, presente no cromossomo Y, chamado SRY, para amostras de 19 indivíduos provenientes de diferentes regiões do Brasil. Os genes nucleares da kapa e beta caseína e do SRY, mostraram-se monomórficos, não sendo possível a obtenção de sequências para o gene IRBP. As inferências filogenéticas pelos genes mitocondriais revelam duas linhagens evolutivas, a dos indivíduos das populações da Bacia do Rio Paraná e a dos indivíduos do oeste da Bacia do Rio Amazonas. Também houve uma correlação entre os diferentes cariótipos e as distintas linhagens moleculares encontradas. Além disso, pode-se sugerir a ocorrência de convergência evolutiva entre estes grupos, bem como um possível caso de simpatria ou de retenção de polimorfismo ancestral nos indivíduos do leste da Amazônia. / The red brocket deer (Mazama americana) has a wide distribution in Neotropics. In this regard, cytogenetic studies in this species revealed chromosomic variations (cytotypes) which strongly suggest that red brockets can be divided into other species. In the present study, we examined phylogenetic relationships of 19 samples of individuals from different areas of Brazil through mitochondrial (cytochrome b and control region D-loop), nuclear (b-casein, k-casein, and first exon of the IRBP) and SRY gene analysis. The sequence analysis showed that b- and k-caseins as well as SRY nuclear genes were monomorphic, whereas IBRP gene sequencing was not possible. Phylogenetic inferences concerning mitochondrial gene analysis demonstrated two evolutionary lineages, one from Parana River Basin (southeast Brazil) and other from west of Amazon River Basin (northwest Brazil). Moreover, we found correlation between different karyotypes and distinct molecular lineages.