Introdução: O hipotireoidismo congênito é a causa mais frequente de retardo mental evitável, cuja prevalência é de 1/3000 crianças nascidas vivas. Pode ser causado por disgenesia tireoideana (80% dos casos) ou por defeitos de síntese hormonal (20% restantes). As disormonogêneses tem sido associadas a mutações nos genes da tireoperoxidase (TPO), tireoglobulina, dual oxidase 2, pendrina, desalogenase e do simportador sódio/iodo. A tireoperoxidase (TPO) é uma glicoproteína de 105 KDa, localizada na membrana apical do tireócito, responsável pela organificação do iodeto. Até o momento 54 mutações, associadas ao hipotireoidismo congênito foram identificadas no gene TPO. Objetivos: Este estudo visou rastrear mutações no gene TPO em pacientes com hipotireoidismo congênito, com defeito total ou parcial de incorporação de iodeto, e associar o defeito genético com o fenótipo do paciente. Casuística e Métodos: Foram estudados 34 pacientes com hipotireoidismo congênito, 13 com DIIT (descarga de iodeto >50%) e 21 com DIIP (descarga de iodeto entre 25 e 50%) por possível defeito no gene TPO. Os métodos empregados foram: extração do DNA genômico de sangue periférico, amplificação por PCR do promotor e dos 17 exons do gene TPO e dos 33 exons do gene DUOX2 , eletroforese em gel de gradiente denaturante (DGGE) e seqüenciamento. Resultados: Foram identificadas 8 novas alterações de seqüências que levam a troca de aminoácidos: Leu68Ile, Gly319Glu, Ala426Gly, Arg584Gln, Val618Met, Pro883Leu, Ala909Thr, A909fsX49; e 4 já descritas na literatura: 396fsX76, Gln660Gly, Arg665Trp, Cys838Ser. Dois pacientes com DTII apresentaram mutações em homozigose, e dois pacientes (um com DTII e um com DPII) eram portadores de alterações em heterozigose composta. Seis pacientes eram portadores de um único alelo da TPO afetado (três com DPII e três com DTII). Foram identificados também 33 polimorfismos (10 novos). Apenas polimorfismos foram identifiados no gene DUOX2. Conclusão: Foi verificada alta freqüência de mutações monoalélicas em pacientes com DIIT e DIIP. Em ambos os grupos as mutações se localizaram ao longo de todo o gene, tanto no domínio extracelular como no intracelular da proteína. Somente duas mutações foram identificadas em mais de um paciente, mostrando a heterogeneidade genotípica da doença nesta população / I ntroduction: Congenital Hypothyroidism affects 1/3000 birth, is caused by thyroid gland dysgenesis (80%) or inborn errors of the thyroid hormone biosynthesis (20%). Genetics defects of the genes for thyroid peroxidase, (TPO), thyroglobulin, sodium/iodine simporter, dual oxidase 2, and pendrine have been associated to dyshormonogenesis. TPO is a glycoprotein of 105 KDa situated in the apical membrane of the thyroid cell, responsible for iodide organification. At least 54 mutations have been identified in patients with dyshormonogenesis. Objectives: The aim of the study was to identify TPO gene mutations in patients with congenital hypothyroidism with total (DIIT) and partial (DIIP) iodide organification defects and to associate the genetic defect with the phenotype of the patient. Patients and Methods: Thirty four patients with congenital hypothyroidism, 13 with DIIT (iodide discharge >50%) and 21 patients with DIIP (iodide discharge between 25- 50%) due to possible TPO gene defect. Extraction of genomic DNA from peripheral blood, PCR amplification of the promoter, 17 exons of TPO gene and of the 33 exons of DUOX2 gene, denaturant gradient gel electrophoreses (DGGE) and sequencement were performed. Results: Eight new sequence alterations were identified: Leu68Ile, Gly319Glu, Ala426Gly, Arg584Gln, Val618Met, Pro883Leu, Ala909Thr, A909fsX49; and four previously described mutations: 396fsX76, Gln660Gly, Arg665Trp, Cys838Ser. Homozygous mutations were identified in two patients with DTII. Ttwo patients (one with DTII and one with DPII) were carrying compound heterozygous mutations. TPO monoallelic mutations were identified in six patients (3 with DPII and 3 with DTII). Thirty three polymorphisms had also been identified (10 news). Conclusion: High frequency of TPO monoallelic mutations was detected in patients with DIIT and DIIP. In both groups of patients the mutations were located all throughout the gene, in the extracellular as well as in the intracellular domain. Only two mutations have been identified in more than one patient, indicating the genotypic heterogeneity of the illness in this population

O programa GenSeed, descrito previamente pelo nosso grupo, implementa um método de montagem progressiva dirigida por semente, o qual permite reconstruir sequências de DNA para montagem alvo-específicas partindo-se de sequências semente curtas de DNA ou proteína. Esse programa pode ser aplicado para a reconstrução de fragmentos genômicos, extracromossômicos e cDNAs, mas não é adequado para a reconstrução de sequências utilizando sementes e bases de dados derivadas de amostras heterólogas. O presente trabalho teve como objetivo o desenvolvimento do GenSeed-HMM, uma versão do GenSeed, capaz de utilizar HMMs de perfis como sementes para a reconstrução de sequências específicas, e de processar dados gerados pelas novas plataformas de sequenciamento, incluindo leituras curtas. Este trabalho relata a implementação do programa GenSeed-HMM, e sua validação utilizando dados reais de diferentes plataformas de sequenciamento, originados de procariotos, eucariotos, bem como de amostras metagenômicas. / The program GenSeed, previously described by our group, implements a seed-driven progressive assembly method for target-specific assembly of DNA sequences, starting from short DNA or protein seed sequences. The program can be applied for the reconstruction of genomic fragments, extrachromosomal genomes, and cDNAs, but is not adequate for sequence reconstruction using seed sequences and databases derived from heterologous samples. The present work aimed at developing GenSeed-HMM, a new version of GenSeed program that can use profile HMMs as seeds for the reconstruction of specific sequences, and incorporates the ability to work with data generated by the new sequencing platforms, including short reads. This work reports the implementation of GenSeed-HMM program and its validation using real life data produced by different next-generation sequencing platforms, and originated from prokaryotic, eukaryotic and metagenomic samples.

Os cloroplastos encontrados nas folhas de plantas e algas pertencem a uma classe de organelas subcelulares denominadas de plastídios. Os plastídios possuem seu próprio genoma (plastoma), o qual contêm genes que participam de funções essenciais no metabolismo vegetal, como fotossíntese, síntese de aminoácidos e outras rotas biossintéticas. O plastoma da maioria das plantas superiores tem tamanho entre 120 a 180 kb. Em angiospermas é caracterizado pela presença de duas regiões repetidas invertidas (IRs) separadas por duas regiões de cópia única; uma longa (LSC) e outra curta (SSC). Para o sequenciamento completo da molécula do DNA (cpDNA) de Eucalyptus grandis, foram preparadas bibliotecas que geraram 9.033 seqüências de DNA. A seqüência completa foi determinada e possui o tamanho de 160.292 pb. As regiões IRs apresentam ter 26.400 pb; a SSC, 18.501 pb e; a LSC, 88.991 pb. As regiões codificadoras foram anotadas por análise de similaridade ao plastoma de Eucalyptus globulus. Todas as categorias gênicas presentes neste plastoma foram encontradas no plastoma de E. grandis. Estas duas espécies possuem 99,57% de similaridade na seqüência de nucleotídeos e apresentam total similaridade na organização dos seus genes. A disponibilidade de plastomas completos de diferentes espécies de Eucalyptus, torna possível realizar estudos comparativos para a identificação de polimorfismos espécie-específicos, importantes para serem utilizados como marcadores moleculares no melhoramento genético de Eucalyptus. / The chloroplasts found in plant leaves and algae belong to a class of subcellular organelle called plastids. The plastids has its own genome (plastome) which contain genes that participate in mainly functions on plant metabolism like photosynthesis, amino acids synthesis and other biosynthetic pathways. The plastome of most of higher plants are between 120-180 kb in size. It is characterized in angiosperms by two inverted repeat regions (IRs) separated by two regions of unique single copies; one large (LSC) and another small (SSC). For the complete sequencing of the DNA (cpDNA) molecule of chloroplast from Eucalyptus grandis, libraries were prepareted and generated 9,033 DNA sequences. The complete sequence was determined and it is 160,292 bp in size. The IRs showed to have 26,400 bp; the SSC, 18,502 bp and; the LSC, 88.991 bp in size. The gene coding regions were annotated by similarity analysis against the Eucalyptus globulus plastome. All types of gene categories present in E. globulus were found in E. grandis plastome. These two species show 99.57% of similarity on nucleotide sequence and they both present total similarity in their gene organization. The availability of complete plastomes from different Eucalyptus species make possible to perform comparative studies to identify species-specific polymorphisms, wich are important to be used as molecular markers in Eucalyptus breeding programs.

<p>Wilson’s disease is a rare inborn error of metabolism caused by a defect in ATP7B, a protein necessary for proper copper excretion into bile. It is characterised by copper accumulation with hepatic and central nervous system dysfunction.</p><p>We investigated 24 Swedish families with Wilson’s disease by sequencing the entire coding sequence using a new technique called manifold sequencing. Disease causing mutations were found in 44 out of 48 alleles.</p><p>From data obtained in the first study, the two most common mutations (C3207A and C2930T) were sought in 2640 anonymous DNA samples from a Swedish population, using a pooling strategy and solid-phase minisequencing. Four C3207A and one C2930T were found. From the number of C3207A, a prevalence of Wilson’s disease in Sweden of about 1 in 110,000 could be estimated.</p><p>Four groups with three patients each had four different genotypes concerning mutations in ATP7B. The patients’ psychopathological symptoms were investigated, using the Karolinska Scales of Personality rating (KSP) and Comprehensive Psychopathological Rating Scale (CPRS). A trend towards lower CPRS scores was seen in the groups with mutations known to render ATP7B completely without activity.</p><p>Using ⁶¹Cu liver PET in patients homozygous for mutations in ATP7B, heterozygotes, normal individuals and two patients with alcoholic liver cirrhosis, significantly slower uptake was seen in the homozygotes as compared to the heterozygotes and normal individuals. The patients with cirrhosis had values in between. This implies that ⁶¹Cu liver PET might be used as an additional rapid and little invasive diagnostic tool in Wilson’s disease.</p><p>In a retrospectively studied cohort consisting of 363 patients followed in Sweden and the UK, nine cases of aggressive intra-abdominal malignancies were seen, which is more than expected. Caution should be taken in the follow-up of Wilson’s disease patients.</p>

Wilson’s disease is a rare inborn error of metabolism caused by a defect in ATP7B, a protein necessary for proper copper excretion into bile. It is characterised by copper accumulation with hepatic and central nervous system dysfunction. We investigated 24 Swedish families with Wilson’s disease by sequencing the entire coding sequence using a new technique called manifold sequencing. Disease causing mutations were found in 44 out of 48 alleles. From data obtained in the first study, the two most common mutations (C3207A and C2930T) were sought in 2640 anonymous DNA samples from a Swedish population, using a pooling strategy and solid-phase minisequencing. Four C3207A and one C2930T were found. From the number of C3207A, a prevalence of Wilson’s disease in Sweden of about 1 in 110,000 could be estimated. Four groups with three patients each had four different genotypes concerning mutations in ATP7B. The patients’ psychopathological symptoms were investigated, using the Karolinska Scales of Personality rating (KSP) and Comprehensive Psychopathological Rating Scale (CPRS). A trend towards lower CPRS scores was seen in the groups with mutations known to render ATP7B completely without activity. Using 61Cu liver PET in patients homozygous for mutations in ATP7B, heterozygotes, normal individuals and two patients with alcoholic liver cirrhosis, significantly slower uptake was seen in the homozygotes as compared to the heterozygotes and normal individuals. The patients with cirrhosis had values in between. This implies that 61Cu liver PET might be used as an additional rapid and little invasive diagnostic tool in Wilson’s disease. In a retrospectively studied cohort consisting of 363 patients followed in Sweden and the UK, nine cases of aggressive intra-abdominal malignancies were seen, which is more than expected. Caution should be taken in the follow-up of Wilson’s disease patients.

The lizard Podarcis carbonelli is an endangered species endemic to the Iberian Peninsula. One location where this species occurs is at the Berlengas Natural Preserve, an Atlantic archipelago off the coast of Portugal. These island populations are geographically separated from nearby mainland populations. The fundamental question is, are these insular individuals distinct from the mainland populations? Four localities were chose for comparison: two island populations and two nearby coastal populations. We assessed this question using three distinct approaches: molecular, morphological and physiological approach. We sequenced the 12S RNA, the mtDNA Control Region and the 7th intron of the !-fibrinogen gene and determined genetic diversity values as well as several parameters of population structure and differentiation. Individuals from these populations were also measured for several biometric characters and their blood lactate concentration was sampled. There was no genetic variation in both the mtDNA regions analyzed. The nuclear intron revealed high levels of genetic variation, with islands having in general lower values than the mainland regions. The four populations sampled had low levels of divergence; the populations of Berlenga and Peniche were the most distinct and the populations of Farilhão and Baleal were the most similar from the four populations sampled. Morphometric analyses revealed a different pattern of similarity among populations with the population of Farilhão being the only population statistically distinct from all other populations based on mass and SVL. Furthermore, island populations were in general more similar to each other than to mainland populations, with the exception of Berlenga males which in size are more similar to the Peniche males. The analysis of the blood lactate concentration revealed that the population of Peniche has significantly lower blood lactate levels than the populations of Farilhão and Berlenga. The lack of genetic differentiation found in the populations under study is most likely due to the recent divergence of these populations. Furthermore, the genetically most different populations (Berlenga and Peniche) are not the most distinct in terms of morphology, particularly the males. This suggests that genetic drift, the most likely mechanism behind the genetic differentiation seen, is not responsible for the morphological differences observed. The morphological differences seen can be attributed to: a possible difference in age of the individuals in each population; mechanisms of natural selection that are favoring specific phenotypes in each of the populations, or phenotypic plasticity. The differences in blood lactate levels found between the population of Peniche and the island populations can be attributed to differences in predatory pressure or home range size. It is suggested that the island populations are closely monitored due to their likely isolation, low mtDNA diversity and possible higher predatory pressure than initially predicted.

ABSTRACT COMPARATIVE SEQUENCE ANALYSIS OF THE INTERNAL TRANSCRIBED SPACER 2 REGION OF TURKISH RED PINE (Pinus brutia TEN.) AND NATURAL ALEPPO PINE (Pinus halepensis MILL.) POPULATIONS FROM TURKEY Tozkar, &Ouml / zge M.S., Department of Biology Supervisor: Prof. Dr. Zeki Kaya April, 2007, 107 pages Turkish red pine (Pinus brutia) is wide-spread and an important forest tree species in Turkey, occurring mainly in southern, western and north-western Turkey and as small isolated populations in the Black Sea region. Aleppo pine (Pinus halepensis) has naturally found only in Adana and Mugla provinces as small population in mixture with Turkish red pine. Although Turkish red pine and Aleppo pine are morphologically different, Turkish red pine has been regarded as subspecies of Aleppo pine by some taxonomists due to occurrence of natural hybridization between these two species. However, the phylogenic relationship between these species needs to be explored further. In the present study, by sampling overlapped populations of both species from Mugla and Adana provinces (4 populations of Turkish red pine and 3 populations of Aleppo pine), internal transcribed spacer (ITS) region of ribosomal DNA were comparatively studied with sequence analysis. Although ITS1, 5.8s and ITS2 regions of ribosomal DNA were studied with ITS primers, only ITS2 region was successfully amplified with polymerase chain reaction (PCR). The complete data set for this region was analysed using MEGA3.1 and Arlequin softwares. Analysis of molecular variance (AMOVA) demonstrated the highest genetic differentiation between Turkish red pine and Aleppo pine in Mugla with 100 percentage of variation. AMOVA analysis also indicated the possibility of low-level migration of genes between Turkish red pine and Aleppo pine populations in Adana with 50.65 percent of molecular variance. Haplotype comparison revealed that two major haplotypes were represented Based on the results of ITS2 region sequence analysis, Turkish populations of Aleppo pine and Turkish red pine populations could not be fully differentiated. In Mugla province Turkish red pine and Aleppo pine revealed more differentiation due to reproductive isolation. But in Adana province, two species shared more common genetic background due to possible hybridization. Since ITS2 region of nuclear ribosomal DNA revealed a few variable and parsimony informative sites for both species, thus, only ITS2 region of ribosomal DNA does not appear to be sufficient for fully resolving genetic relationships between Turkish red pine and Aleppo pine populations. Further studies including ITS1 and 5.8s regions of ribosomal DNA and populations included from major Aleppo pine distribution areas will be useful to understand the evolutionary relationship between Aleppo pine and Turkish red pine populations in Turkey.

With recent and continuing advances in bioinformatics, the volume of sequence data has increased tremendously. Along with this increase, there is a growing need to develop efficient algorithms to process such data in order to make useful and important discoveries. Careful analysis of genomic data will benefit science and society in numerous ways, including the understanding of protein sequence functions, early detection of diseases, and finding evolutionary relationships that exist among various organisms. Most sequence analysis problems arising from computational genomics and evolutionary biology fall into the class of NP-complete problems. Advances in exact and approximate algorithms to address these problems are critical. In this thesis, we investigate a novel graph theoretical model that deals with fundamental evolutionary problems. The model allows incorporation of the evolutionary operations ``insertion', ``deletion', and ``substitution', and various parameters such as relative distances and weights. By varying appropriate parameters and weights within the model, several important combinatorial problems can be represented, including the weighted supersequence, weighted superstring, and weighted longest common sequence problems. Consequently, our model provides a general computational framework for solving a wide variety of important and difficult biological sequencing problems, including the multiple sequence alignment problem, and the problem of finding an evolutionary ancestor of multiple sequences. In this thesis, we develop large scale combinatorial optimization techniques to solve our graph theoretical model. In particular, we formulate the problem as two distinct but related models: constrained network flow problem and weighted node packing problem. The integer programming models are solved in a branch and bound setting using simultaneous column and row generation. The methodology developed will also be useful to solve large scale integer programming problems arising in other areas such as transportation and logistics.

Introdução: O hipotireoidismo congênito é a causa mais frequente de retardo mental evitável, cuja prevalência é de 1/3000 crianças nascidas vivas. Pode ser causado por disgenesia tireoideana (80% dos casos) ou por defeitos de síntese hormonal (20% restantes). As disormonogêneses tem sido associadas a mutações nos genes da tireoperoxidase (TPO), tireoglobulina, dual oxidase 2, pendrina, desalogenase e do simportador sódio/iodo. A tireoperoxidase (TPO) é uma glicoproteína de 105 KDa, localizada na membrana apical do tireócito, responsável pela organificação do iodeto. Até o momento 54 mutações, associadas ao hipotireoidismo congênito foram identificadas no gene TPO. Objetivos: Este estudo visou rastrear mutações no gene TPO em pacientes com hipotireoidismo congênito, com defeito total ou parcial de incorporação de iodeto, e associar o defeito genético com o fenótipo do paciente. Casuística e Métodos: Foram estudados 34 pacientes com hipotireoidismo congênito, 13 com DIIT (descarga de iodeto >50%) e 21 com DIIP (descarga de iodeto entre 25 e 50%) por possível defeito no gene TPO. Os métodos empregados foram: extração do DNA genômico de sangue periférico, amplificação por PCR do promotor e dos 17 exons do gene TPO e dos 33 exons do gene DUOX2 , eletroforese em gel de gradiente denaturante (DGGE) e seqüenciamento. Resultados: Foram identificadas 8 novas alterações de seqüências que levam a troca de aminoácidos: Leu68Ile, Gly319Glu, Ala426Gly, Arg584Gln, Val618Met, Pro883Leu, Ala909Thr, A909fsX49; e 4 já descritas na literatura: 396fsX76, Gln660Gly, Arg665Trp, Cys838Ser. Dois pacientes com DTII apresentaram mutações em homozigose, e dois pacientes (um com DTII e um com DPII) eram portadores de alterações em heterozigose composta. Seis pacientes eram portadores de um único alelo da TPO afetado (três com DPII e três com DTII). Foram identificados também 33 polimorfismos (10 novos). Apenas polimorfismos foram identifiados no gene DUOX2. Conclusão: Foi verificada alta freqüência de mutações monoalélicas em pacientes com DIIT e DIIP. Em ambos os grupos as mutações se localizaram ao longo de todo o gene, tanto no domínio extracelular como no intracelular da proteína. Somente duas mutações foram identificadas em mais de um paciente, mostrando a heterogeneidade genotípica da doença nesta população / I ntroduction: Congenital Hypothyroidism affects 1/3000 birth, is caused by thyroid gland dysgenesis (80%) or inborn errors of the thyroid hormone biosynthesis (20%). Genetics defects of the genes for thyroid peroxidase, (TPO), thyroglobulin, sodium/iodine simporter, dual oxidase 2, and pendrine have been associated to dyshormonogenesis. TPO is a glycoprotein of 105 KDa situated in the apical membrane of the thyroid cell, responsible for iodide organification. At least 54 mutations have been identified in patients with dyshormonogenesis. Objectives: The aim of the study was to identify TPO gene mutations in patients with congenital hypothyroidism with total (DIIT) and partial (DIIP) iodide organification defects and to associate the genetic defect with the phenotype of the patient. Patients and Methods: Thirty four patients with congenital hypothyroidism, 13 with DIIT (iodide discharge >50%) and 21 patients with DIIP (iodide discharge between 25- 50%) due to possible TPO gene defect. Extraction of genomic DNA from peripheral blood, PCR amplification of the promoter, 17 exons of TPO gene and of the 33 exons of DUOX2 gene, denaturant gradient gel electrophoreses (DGGE) and sequencement were performed. Results: Eight new sequence alterations were identified: Leu68Ile, Gly319Glu, Ala426Gly, Arg584Gln, Val618Met, Pro883Leu, Ala909Thr, A909fsX49; and four previously described mutations: 396fsX76, Gln660Gly, Arg665Trp, Cys838Ser. Homozygous mutations were identified in two patients with DTII. Ttwo patients (one with DTII and one with DPII) were carrying compound heterozygous mutations. TPO monoallelic mutations were identified in six patients (3 with DPII and 3 with DTII). Thirty three polymorphisms had also been identified (10 news). Conclusion: High frequency of TPO monoallelic mutations was detected in patients with DIIT and DIIP. In both groups of patients the mutations were located all throughout the gene, in the extracellular as well as in the intracellular domain. Only two mutations have been identified in more than one patient, indicating the genotypic heterogeneity of the illness in this population

Os cloroplastos encontrados nas folhas de plantas e algas pertencem a uma classe de organelas subcelulares denominadas de plastídios. Os plastídios possuem seu próprio genoma (plastoma), o qual contêm genes que participam de funções essenciais no metabolismo vegetal, como fotossíntese, síntese de aminoácidos e outras rotas biossintéticas. O plastoma da maioria das plantas superiores tem tamanho entre 120 a 180 kb. Em angiospermas é caracterizado pela presença de duas regiões repetidas invertidas (IRs) separadas por duas regiões de cópia única; uma longa (LSC) e outra curta (SSC). Para o sequenciamento completo da molécula do DNA (cpDNA) de Eucalyptus grandis, foram preparadas bibliotecas que geraram 9.033 seqüências de DNA. A seqüência completa foi determinada e possui o tamanho de 160.292 pb. As regiões IRs apresentam ter 26.400 pb; a SSC, 18.501 pb e; a LSC, 88.991 pb. As regiões codificadoras foram anotadas por análise de similaridade ao plastoma de Eucalyptus globulus. Todas as categorias gênicas presentes neste plastoma foram encontradas no plastoma de E. grandis. Estas duas espécies possuem 99,57% de similaridade na seqüência de nucleotídeos e apresentam total similaridade na organização dos seus genes. A disponibilidade de plastomas completos de diferentes espécies de Eucalyptus, torna possível realizar estudos comparativos para a identificação de polimorfismos espécie-específicos, importantes para serem utilizados como marcadores moleculares no melhoramento genético de Eucalyptus. / The chloroplasts found in plant leaves and algae belong to a class of subcellular organelle called plastids. The plastids has its own genome (plastome) which contain genes that participate in mainly functions on plant metabolism like photosynthesis, amino acids synthesis and other biosynthetic pathways. The plastome of most of higher plants are between 120-180 kb in size. It is characterized in angiosperms by two inverted repeat regions (IRs) separated by two regions of unique single copies; one large (LSC) and another small (SSC). For the complete sequencing of the DNA (cpDNA) molecule of chloroplast from Eucalyptus grandis, libraries were prepareted and generated 9,033 DNA sequences. The complete sequence was determined and it is 160,292 bp in size. The IRs showed to have 26,400 bp; the SSC, 18,502 bp and; the LSC, 88.991 bp in size. The gene coding regions were annotated by similarity analysis against the Eucalyptus globulus plastome. All types of gene categories present in E. globulus were found in E. grandis plastome. These two species show 99.57% of similarity on nucleotide sequence and they both present total similarity in their gene organization. The availability of complete plastomes from different Eucalyptus species make possible to perform comparative studies to identify species-specific polymorphisms, wich are important to be used as molecular markers in Eucalyptus breeding programs.