Cyanobakterien zŠhlen zu den Šltesten Lebewesen auf der Erde. Diese Bakterien, auch Blaualgen genannt, trugen wesentlich zur Sauerstoffanreicherung der Erde bei, da sie eine ausgeprŠgte FŠhigkeit zur Photosynthese besitzen. Der produzerte Sauerstoff der Photosynthese hemmt jedoch eine weitere AktivitŠt von Cyanobakterien, die Stickstofffixierung. Um die Hemmung zu vermeiden, werden diese AktivitŠten zeitlich getrennt und optimal dem tŠglichen Hell-Dunkel-Rhythmus angepasst. Ein evolutionŠrer Vorteil wird erzielt, wenn der Organismus diesen Rhythmus antizipiert und sich darauf vorbereitet. Aus diesem Grund haben Cyanobakterien eine innere Uhr entwickelt, deren Rhythmus zirkadian ist, ãzirka diemÒ bedeutet ãungefŠhr ein TagÒ. Cyanobakterien der Spezies Synechococcus elongatus PCC 7942 haben sich als Modellorganismus etabliert, weil in ihnen die ersten bakteriellen zirkadianen Oszillationen auf molekularer Ebene entdeckt worden sind. Ihre zirkadiane Uhr entspringt dreier, auf der DNS beieinanderliegenden, Gene (kaiA, kaiB, kaiC) und ihrer dazugehšrigen Proteine. Phosphorylierte KaiC-Proteine Ÿben eine RŸckkopplung auf die Transkription von kaiB und kaiC aus, wodurch die AktivitŠt des kaiBC-Promotors zirkadian oszilliert. Eines der wichtigsten Experimente der letzten Jahre hat gezeigt, dass dieser Transkriptions-Translations-Oszillator mit einem weiteren Oszillator gekoppelt ist, der nicht von Transkription und Translation abhŠngt. Das Experiment des Kondo Labors rekonstruiert zirkadiane Oszillationen mit nur drei Proteinen KaiA, KaiB, KaiC und ATP. Die Proteine bilden Komplexe verschiedener Stoichiometrie, die durchschnittliche Phosphorylierung des Proteins KaiC zeigt stabile Oszillationen mit einer zirkadianen Periode. Da ein Entfernen von einem der Proteine zum Verlust der Oszillationen fŸhrt, wird dieser Post-Translations-Oszillator auch als Kernoszillator bezeichnet. Der Phosphorylierungszyklus von KaiC wird bestimmt durch fortlaufende Phosphorylierung und Dephosphorylierung an zwei Positionen des Proteins, den AminosŠuren Serin 431 und Threonin 432. Die Phase des Kernoszillators kann an der Verteilung der vier PhosphorylierungszustŠnde (nicht-, serin-, threonin- und doppeltphosphoryliert) abgelesen werden. KaiC wechselwirkt mit KaiA und KaiB, damit verschieden phosphorylierte KaiC synchronisieren und die Uhr Ÿber mehrere Tage konstante Oszillationen zeigt. Die Details dieser Wechselwirkung sind jedoch unbekannt. In dieser Dissertation erstelle ich ein mathematisches Modell des Kernoszillators und simuliere die vorliegenden Experimente des O''Shea Labors. Die Simulation reproduziert den KaiC Phosphorylierungszyklus der Uhr quantitativ. Um die wichtigsten experimentellen Nebenbedingungen zu erfŸllen, muss das theoretische Modell zwei molekulare Eigenschaften von KaiC berŸcksichtigen, wodurch ich wichtige Vorhersagen treffe. Die erste Nebenbedingung ist durch die Robustheit des Systems gegeben. Die KaiC-Phosphorylierung Šndert sich nicht, wenn die Gesamtkonzentrationen der drei Proteine in gleicher Weise variiert werden. Um diese Bedingung zu erfŸllen, muss das Modell zwei verschiedenartige Komplexe von KaiA und KaiC berŸcksichtigen. ZusŠtzlich zu einem KaiAC Komplex, der die Autophosphorylierung von KaiC unterstŸtzt, muss KaiC den grš§ten Teil von KaiA unabhŠngig vom Phosphorylierungszustand sequestrieren. Diese zweite Bindestelle ist meine erste theoretische Vorhersage. Die zweite Nebenbedingung ist durch das Ÿbergangsverhalten nach Hinzugabe von KaiB gegeben. KaiB induziert eine Dephosphorylierung von KaiC, die abhŠngig vom Phosphorylierungsniveau ist. Ein Umschalten zwischen phosphoylierendem und dephosphorylierendem KaiC ist deshalb nur in bestimmten Zeitfenstern mšglich. Um die gemessenen Zeitfenster in der Simulation zu reproduzieren, postuliere ich im Modell, dass sechsfach Serin phosphorylierte KaiBC Komplexe KaiA inaktivieren. Diese hochgradig nichtlineare RŸckkopplung ist meine zweite theoretische Vorhersage. Die beiden Vorhersagen werden anschlie§end experimentell ŸberprŸft. HierfŸr werden aufgereinigte Kai-Proteine mit ATP gemischt. Proben an ausgewŠhlten Zeitpunkten werden mit der nativen Massenspektrometrie untersucht. Diese ist eine neuartige Methode, die es erlaubt, intakte Proteinkomplexe zu untersuchen. Die Spektren bestŠtigen sowohl die zweite KaiAC-Bindestelle als auch die nichtlineare RŸckkopplung. Das mathematische Modell erlaubt es au§erdem, die drei definierenden Prinzipien von zirkadianen Uhren fŸr den Kernoszillator zu erklŠren. Erstens sichern konstante Phosphorylierungs- und Dephosphorylierungsraten von KaiC und ein pŸnktliches Umschalten zwischen beiden Phasen den Freilauf des Oszillators. Dieser Freilauf bewirkt, dass die zirkadiane Uhr auch unter konstanten Bedingungen, vor allem gleichbleibenden LichtverhŠltnissen, weiterlaufen kann. Zweitens muss die Periodendauer des Oszillators zu unterschiedlichen Šu§eren Bedingungen erhalten bleiben (Temperaturkompensation). Diese Bedingung wird realisiert, indem temperaturabhŠngige Dissoziationskonstanten von KaiAC und KaiBC Komplexen Phasenverschiebungen erzeugen, die sich gegenseitig kompensieren. Drittens muss die Phase des Oszillators sich dem Tagesrhythmus anpassen kšnnen. Diese Anpassung folgt aus einem Šu§eren Warm-Kalt-Rhythmus, der die drei temperaturabhŠngigen Phasenverschiebungen nur zum Teil einschaltet und damit die Kompensation verhindert. Eine in silico Evolutionsanalyse zeigt, dass eine zweite phosphorylierbare AminosŠure einen evolutionŠren Vorteil bringt und die Verteilung der PhosphorylierungszustŠnde optimiert ist, um eindeutig die Zeit zu bestimmen. Das Ergebnis weist darauf hin, dass diese Verteilung die physiologisch wichtige Ausgangsgrš§e der Uhr ist und die vier PhosphroylierungszustŠnde die Funktionen der zirkadianen Uhr von Cyanobakterien sichern. / Biological activities in cyanobacteria are coordinated by an internal clock. The rhythm of the cyanobacterium Synechococcus elongatus PCC 7942 originates from the kai gene cluster and its corresponding proteins. In a test tube, the proteins KaiA, KaiB and KaiC form complexes of various stoichiometry and the average phosphorylation level of KaiC exhibits robust circadian oscillations in the presence of ATP. The characteristic cycle of individual KaiC proteins is determined by phosphorylation of serine 431 and threonine 432. Differently phosphorylated KaiC synchronize due to an interaction with KaiA and KaiB. However, the details of this interaction are unknown. Here, I quantitatively investigate the experimentally observed characteristic phosphorylation cycle of the KaiABC clockwork using mathematical modeling. I thereby predict the binding properties of KaiA to both KaiC and KaiBC complexes by analyzing the two most important experimental constraints for the model. In order to reproduce the KaiB-induced dephosphorylation of KaiC a highly non-linear feedback loop has been identified. This feedback originates from KaiBC complexes, which are exclusively phosphorylated at the serine residue. The observed robustness of the KaiC phosphorylation level to concerted changes of the total protein concentrations demands an inclusion of two KaiC binding sites to KaiA in the mathematical model. Besides the formation of KaiAC complexes enhancing the autophosphorylation activity of KaiC, the model accounts for a KaiC binding site, which constantly sequestrates a large fraction of free KaiA. These theoretical predictions have been confirmed by the novel method of native mass spectrometry, which was applied in collaboration with the Heck laboratory. The mathematical model elucidates the mechanism by which the circadian clock satisfies three defining principles. First, the highly non-linear feedback loop assures a rapid and punctual switch to dephosphorylation which is essential for a precise period of approximately 24 h (free-running rhythm). Second, the dissociation of the protein complexes increases with increasing temperatures. These perturbations induce opposing phase shifts, which exactly compensate during one period (temperature compensation). Third, a shifted external rhythm of low and high temperature affects only a part of the three compensating phase perturbations, which leads to phase shifts (phase entrainment). An in silico evolution analysis shows that the existing second phosphorylatable residue of KaiC is not necessary for the existence of sustained oscillations but provides an evolutionary benefit. The analysis demonstrates that the distribution of four phosphorylated states of KaiC is optimized in order for the organism to uniquely distinguish between dusk and dawn. Consequently, this thesis emphasizes the importance of the four phosphorylated states of KaiC, which assure the outstanding performance of the core oscillator.

No description available.

Circadian rhythms dictate the timing of both once-in-a-lifetime adult emergence (eclosion) and daily locomotor activity rhythms in the flesh fly S. crassipalpis. Light cycles are considered the primary environmental time cue (zeitgeber), but the life history of S. crassipalpis suggests that temperature cycles (thermocycles) may also play a key role. This work evaluates the efficacy of thermocycling as a zeitgeber in S. crassipalpis. We found that shifting both light and temperature cycles of sufficient amplitude affect the phasing of eclosion and locomotor activity, but result in different patterns. Additional experiments suggest greater thermocycle sensitivity during the late metamorphic period and that thermocycling reduces variance in eclosion times. Taken together, these findings suggest that temperature cycles can be used by S. crassipalpis to time eclosion and adult locomotor activity, and that S. crassipalpis may be physiologically primed to use thermocycle information during metamorphosis.

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[pt] O escoamento anular é caracterizado por um núcleo gasoso fluindo a alta velocidade com um filme líquido no seu entorno, molhando a parede do duto. A presença de gotículas líquidas no núcleo gasoso resulta em impacto relevante em características do escoamento anular, como gradiente de pressão e propriedades das ondas presentes no filme líquido. A formação de gotículas se dá usualmente na crista das ondas de perturbação presentes na interface líquido-gás. No presente trabalho, é realizado um estudo do regime anular com presença de gotículas em tubulações verticais utilizando o Modelo de Dois Fluidos unidimensional. Um modelo de transferência de massa das gotículas é desenvolvido e acoplado ao modelo de Dois Fluidos. O modelo resultante permite capturar a evolução automática da interface gás-líquido e a formação de ondas de filme líquido e sua influência no desprendimento e deposição de gotículas. Analisa-se o desempenho de três modelos de entranhamento de gotículas disponíveis na literatura, além de um modelo de deposição de gotículas. Considerando que gotículas são criadas por cisalhamento nas cristas das ondas de perturbação, modificações dos modelos são propostas com a finalidade de melhor capturar a influência das ondas do filme líquido nos processos de entranhamento e deposição de gotículas. Parâmetros do escoamento como gradiente de pressão, espessura do filme do líquido e variáveis relacionadas com as ondas interfaciais são avaliados, mostrando boa concordância com dados experimentais disponíveis na literatura. / [en] Annular flow is characterized by a high velocity gas core flow, with a thin liquid film around it, wetting the pipe wall. The presence of liquid droplets in the gas core has relevant impact on annular flow characteristics, such as pressure drop and liquid film wave properties. Droplets are usually created by shear at disturbance wave crests, along the gas-liquid interface. At the present work, vertical annular flow with droplet entrainment is studied using the 1-D Two-Fluid model. A droplet mass transfer model is developed and coupled to the Two-Fluid model. The resulting model allows capturing the automatic evolution of the gas-liquid interface, liquid film wave formation and the waves influence on droplet entrainment and deposition. A performance analysis in carried out for three droplet entrainment models available in literature, as well as one deposition model. Taking into account that droplets are created by disturbance wave crest shearing, model modifications are proposed, aiming to better capture the influence of liquid film waves on droplet entrainment and deposition mechanisms. Flow parameters such as pressure drop, film thickness and wave features are evaluated, showing good agreement with experimental data found in literature.

Array jet impingement cooling experiments were performed on flat and grooved surfaces with the surface at a constant temperature. For the flat surface, power and temperature measurements were performed to obtain convection coefficients under a wide range of operating conditions such as jet speed, orifice to surface stand-of distance, and open area percentage. Cooling performance (CP) was calculated as the ratio between heat transfer and fan power. An empirical model was developed to predict jet impingement heat transfer taking into account the entrainment effects. Experimental results showed that jet impingement can provide high transfer rates with lower rates of cooling cost in comparison to contemporary conventional techniques in the industry. CP values over 279 were measured which are significantly higher than the standard values of 70 to 95 in current technology. The model enhanced prediction accuracy by taking into account the entrainment effects; an effect that is rarely considered in the literature. Experiments on the grooved surfaces were performed at dry and wet surface conditions. Under dry conditions, results showed 10%~55% improvement in heat transfer when compared to the flat surface. Improvement percentage tends to be higher at wider gaps between the array of orifices and the grooved surface. An improvement of 30%~40% was observed when increasing Re either by increasing orifice diameter or jet speed. Similar improvement was observed at higher flow open area percentages. No significant improvement in heat transfer resulted from decreasing the size of the grooves from 3.56mm to 2.54mm. Similarly, no noticeable change in heat transfer resulted from changing the relative position of the jets striking the surface at the top of the grooves to the bottom of the grooves. Deeper grooves with twice the depth gave statistically similar average heat transfer coefficients as shallower grooves. Under wet conditions, a hybrid cooling technique approach was proposed by using air jets impinging on a grooved surface with the grooves containing water. The approached is proposed and evaluated experimentally for its feasibility as an alternative for cooling towers of thermoelectric power plants. Convection heat and mass transfer coefficients were measured experimentally using the heat mass transfer analogy. Results showed that hybrid jet impingement provided high magnitudes of heat flux at low jet speeds and flow rates. High coefficients of performance CP > 3000, and heat fluxes > 8,000W/m2 were observed. Hybrid jet impingement showed 500% improvement as compared to jet impingement on a dry flat surface. CP values of hybrid jet impingement is 600% to 1,500% more as compared to performance of air-cooled condensers and wet cooling towers. Water use for hybrid jet impingement cooling is efficient since evaporation energy is absorbed from the surface directly instead of cooling air to near wet-bulb temperature. / PHD / This thesis explored the possibility of using air jets on the outside surface of a device that is used to condense steam. An experiment apparatus was used to imitate the conditions of steam condensation in the lab. A flat metallic surface was heated by placing an electric heater beneath it. The metallic surface was cooled using air jets coming out of orifices situated above the hot metallic surface. A fan, connected to an electric motor, was used to create the air jets. The amount of heat transfer was measured by measuring the electric power the heater consumed. This measured power was compared to the power needed to run the fan. The ratio of heat transfer to fan power is called the coefficient of performance CP. The CP values of more than 200 were obtained when air jets were used meaning that we need one kilowatt of mechanical power to remove 200 kilowatts of heat. This CP value is 300% more than the current technology used in the industry where CP ranges from 70 to 90. This means that we can build very efficient steam condensers for power plants. This type of condensers that uses air jets allows the power plant to be efficient and to be able to increase the amount of power generated without extra cost. Further enhancement of the CP can be achieved by making the hot surface grooved instead of flat with the grooves containing water. Air jets, coming out of orifices situated above the grooved surface, were used for cooling. The CP values of more than 3,000 were obtained when air jets were used with wet grooved surface. This CP values is 1,500% more than the current technology used in the industry. This type of condensers that uses air jets on wet grooves allows the power plant to be efficient and to be able to tremendously increase the amount of power generated without extra power and water costs.

No description available.

Escoamentos bifásicos estão presentes em diversos processos naturais e industriais, como na indústria de petróleo. Podem apresentar-se em diferentes configurações topológicas, ou, padrões de escoamento, entre eles o escoamento estratificado ondulado e o estratificado com mistura na interface. Os escoamentos bifásicos estratificados óleo-água têm sido utilizados como uma forma conveniente de evitar a formação de emulsões de água em óleo em oleodutos e possuem uma ocorrência comum em poços de petróleo direcionais. Quando a onda interfacial ultrapassa determinado limite geométrico e cinemático, surge o fenômeno do entranhamento de gotas, representado por misturas entre as fases junto à interface que promovem um aumento na queda de pressão. Modelos têm sido apresentados pela literatura na tentativa de descrever o fenômeno do entranhamento de gotas. Neste trabalho é apresentada uma nova proposta de modelagem matemática unidimensional para o entranhamento de gotas com o objetivo de melhorar a previsão dos parâmetros envolvidos, em especial, da fração volumétrica de óleo e da queda de pressão bifásica. Também foi utilizada simulação numérica computacional, CFD (Computational Fluid Dynamics), com o uso de software comercial para obtenção dos valores dos parâmetros do escoamento estratificado ondulado óleo-água (fração volumétrica de óleo, queda de pressão, amplitude e comprimento da onda interfacial). Os resultados da modelagem fenomenológica para entranhamento e os de CFD foram comparados com bancos de dados experimentais. Os resultados em CFD mostram concordância com os resultados experimentais, tanto na análise qualitativa das propriedades geométricas das ondas interfaciais, quanto na comparação direta com os dados para fração volumétrica e queda de pressão. Os resultados numéricos da modelagem fenomenológica para fatores de entranhamento apresentam boa concordância com dados da literatura. / Two-phase flows are present in many natural and industrial processes, such as in the oil industry. They may be found arranged in several flow patterns, including the wavy stratified flow and the stratified with mixing at the interface. The stratified oil-water flow has been used as a convenient way to avoid the formation of emulsions of water in oil and have a common occurrence in directional oil wells. When the interfacial wave exceeds a certain geometric and kinematic limit the phenomenon of drop entrainment arises at the interface, causing an increase of pressure drop. Models have been presented in the literature in an attempt to describe the phenomenon of drop entrainment. In this work, we present a new method for the one-dimensional mathematical modeling of entrainment in order to improve the prediction of oil volume fraction and pressure drop. It was also used a commercial computational fluid dynamics tool (CFD) to obtain the values of flow parameters of wavy stratified oil-water flow, such as oil volume fraction, pressure drop, amplitude and length of the interfacial waves. The results of the phenomenological modeling for entrainment and CFD were compared with experimental databases. The CFD results are in agreement with the experimental results in both the qualitative analysis of the geometric properties of the interfacial waves and in direct comparison with oil-volumetric-fraction and pressure-drop data. The numerical results of the phenomenological model for entrainment factors are in agreement with data from the literature.