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Les besoins énergétiques mondiaux sont principalement satisfaits par l’utilisation de ressources fossiles telles que le pétrole, le charbon ou le gaz. L’utilisation de ces ressources fossiles dans le domaine de l’énergie ou de l’industrie chimique entraine une forte accumulation de CO2 dans l’atmosphère et provoque des dérèglements climatiques. En plus de poser un problème écologique majeur, ces ressources fossiles ne sont pas renouvelables et poseront un problème de disponibilités à terme. Pour parer à ces difficultés, une solution envisageable est de limiter, voire de stopper l’utilisation des ressources fossiles au profit de sources carbonées renouvelables telles que le CO2 ou la biomasse. Ces ressources pourrait être utilisées comme source de produits chimiques et / ou pour le stockage des énergies intermittentes. Ces utilisations requièrent la transformation de composés oxygénés comportant des liaisons C=O (comme CO2) et C−O (comme la biomasse) et demandent un apport d’énergie dans des réactions de réduction. Peu de réducteurs sont compatibles avec cette utilisation qui nécessite l’emploi de composés à la fois renouvelables et ayant un potentiel rédox adapté à la réduction de liaisons C–O. Ce sont essentiellement le dihydrogène et l’acide formique. Dans ce contexte, le présent travail doctoral se propose de définir et de répondre au cahier des charges d’un réducteur renouvelable. En premier lieu, l’utilisation des formiates de silicium est explorée, à travers des réactions mimant le comportement d’hydrosilanes. Cette stratégie est mise à profit dans des réactions de couplages déshydrogénant et pour la réduction de cétones par hydrosilylation par transfert. Enfin, ce concept est transposé à l’hydroboration par transfert avec l’utilisation de composés mono formiates de bore et d’un catalyseur mettant en jeu un ligand participatif. Les formiates de bore et de silicium apparaissent ainsi comme des réducteurs renouvelables attrayants, qui combinent une source d’hydrure renouvelable (l’acide formique) avec un élément oxophile du groupe principal dont les propriétés stéréo-électroniques sont facilement modulables. / Global energy needs are mostly covered by the use of fossil fuels such as oil, coal or gas. The use of these fossil resources in the field of energy or the chemical industry causes a high accumulation of CO2 in the atmosphere and causes climatic disturbances. In addition to posing a major ecological problem, these fossil resources are not renewable and will pose a problem of availability in the long term. To overcome these difficulties, one possible solution is to limit or even stop the use of fossil resources in favor of renewable carbon sources such as CO2 or biomass. These resources could be used as a source of chemicals and / or storage of intermittent energies. These uses require the conversion of oxygenates with C=O (such as CO2) and C–O (such as biomass) and require energy input into reduction reactions. Few reducers are compatible with this use which requires the use of compounds both renewable and having a redox potential adapted to the reduction of C–O bonds. These are essentially dihydrogen and formic acid. In this context, this doctoral work aims to define and meet the specifications of a renewable reducer. In the first place, the use of silyl formates is explored, through reactions mimicking the behavior of hydrosilanes. This strategy is used in dehydrogenating coupling reactions and for the reduction of ketones by transfer hydrosilylation. Finally, this concept is transposed to transfer hydroboration with the use of boryl mono formate compounds and a catalyst involving a participative ligand. The boryl and silyl formates thus appear as attractive renewable reducers, which combine a source of renewable hydride (formic acid) with an oxophilic element of the main group whose stereo-electronic properties are easily adjustable.

Sem resumo / Sem abstract

Le photosystème II (PSII) est un complexe multi-protéique qui utilise l'énergie solaire pour oxyder l'eau et réduire des quinones. Le site catalytique d'oxydation de l'eau est localisé coté lumen du complexe, alors, que le site de réduction comprenant deux quinones (QA et QB) et un fer non-hémique est localisé sur le coté stromal du complexe membranaire. Dans cette thèse j'ai étudié les deux cotés accepteur et donneur d'électrons du PSII.QA•- et QB•- sont couplés magnétiquement au fer non-hémique donnant de faibles signaux RPE. Le fer non-hémique possède quatre ligands histidines et un ligand (bi)carbonate échangeable. Le formate peut échanger le ligand (bi)carbonate induisant un ralentissement dans le transfert d'électrons. Ici, je décris une modification du signal RPE de QB•- Fe2+ lorsque le formate est substitué au (bi)carbonate. J'ai aussi découvert un second signal RPE dû à la présence du formate à la place du (bi)carbonate lorsque QB est doublement réduit. De plus, j'ai trouvé que les signaux RPE natifs de QA•- Fe2+ et QB•- Fe2+ possèdent une signature intense encore jamais détectée. Tous les signaux RPE rapportés dans cette thèse devraient faciliter le titrage redox de QB par RPE. J'ai aussi observé que QB•- peut oxyder le fer non-hémique à l'obscurité en anaérobie. Cette observation implique qu'au moins dans une fraction des centres, le couple QB•-/QBH2 possède un potentiel redox plus haut que supposé. La quantification du nombre de centres où cette oxydation du fer se produit par le couple QB•-/QBH2 reste à faire. La réduction du PSII par le dithionite génère un signal modifié de QA•-Fe2+, un changement structural du PSII observé par électrophorèse. Cela peut indiquer la réduction d'un pont disulfure à l'intérieur du PSII. Concernant le site d’oxydation de l'eau, j'ai étudié la première étape de l'assemblage du site catalytique (Mn4Ca), en suivant l'oxydation du Mn2+ par RPE en bande X et haut champ. J'ai mis au point des conditions expérimentales permettant le piégeage du premier intermédiaire et j'ai aussi trouvé une incohérence avec des travaux publiés dans la littérature. J'ai aussi trouvé que le dithionite pouvait réduire le site catalytique Mn4Ca, en formant des états sur-réduits qui peuvent correspondre aux intermédiaires de l'assemblage du cluster Mn4Ca. / Photosystem II (PSII) uses light energy to oxidise water and reduce quinone. The water oxidation site is a Mn4Ca cluster located on the luminal side of the membrane protein complex, while the quinone reduction site is made up of two quinones (QA and QB) and a non-heme Fe2+ located on the stromal side of the membrane protein. In this thesis I worked on both oxidation and reduction functions of the enzyme. QA•- and QB•- are magnetically couple to the Fe2+ giving weak and complex EPR signals. The distorted octahedral Fe2+ has four histidines ligands and an exchangeable (bi)carbonate ligand. Formate can displace the exchangeable (bi)carbonate ligand, slowing electron transfer out of the PSII reaction centre. Here I report the formate-modified QB•- Fe2+ EPR signal, and this shows marked spectral changes and has a greatly enhanced intensity. I also discovered a second new EPR signal from formate-treated PSII that is attributed to formate-modified QA•- Fe2+ in the presence of a 2-electron reduced form of QB. In addition, I found that the native QA•- Fe2+ and QB•- Fe2+ EPR signals have a strong feature that had been previously missed because of overlapping signals (mainly the stable tyrosyl radical TyrD•). These previously unreported EPR signals should allow for the redox potential of this cofactor to be directly determined for the first time. I also observed that when QB•-Fe was formed; it was able to oxidise the iron slowly in the dark. This occurred in samples pumped to remove O2. This observation implies that at least in some centres, the QB•-/QBH2 couple has a higher potential then is often assumed and thus that the protein-bound semiquinone is thermodynamically less stable expected. It has yet to be determined if this represents a situation occurring in the majority of centres. Treatment of the system with dithionite generated a modified form of QA•-Fe2+ state and a change in the association of the proteins on gels. This indicates a redox induced modification of the protein, possibly structurally important cysteine bridge in PSII.On the water oxidation side of the enzyme, I studied the first step in the assembly of the Mn4Ca cluster looking at Mn2+ oxidation using kinetic EPR and high field EPR. Conditions were found for stabilising the first oxidised state and some discrepancies with the literature were observed. I also found that dithionite could be used to reduce the Mn4Ca, forming states that are formally equivalent to those that exist during the assembly of the enzyme.

Sem resumo / Sem abstract

No description available.

Protozoan parasites of the genus Plasmodium are the causative agent of malaria. The most severe form of human malaria is caused by P. falciparum, responsible for approximately three quarters of a million deaths each year. One major problem in the treatment of malaria is resistance to existing chemotherapies. Consequently, there is an urgent need to identify and validate novel drug targets. A possible recently identified drug target is the PfNitA protein of P. falciparum which contains orthologues in other Plasmodium species but is absent from humans. The gene is annotated as a putative formate-nitrite transporter and orthologues are found in a range of prokaryotes as well as the lower eukaryotes algae and fungi. To determine the biological function of the protein, pfnita was expressed in Escherichia coli strains lacking the endogenous formate and nitrite transporters. In order to analyse the essentiality of the gene a reverse genetics approach was taken and the data discussed. Results indicate that the PfNitA protein is located in the plasma membrane and digestive vacuole of intraerythrocytic parasites suggesting a role in the uptake or excretion of metabolites. A second complexity with regard to treatment is the lack of a vaccine. A problem in crating a vaccine is antigenic variation. The PIR family of proteins contain a so-called hypervariable domain that has led to the suggestion that the family may play a role in antigenic variation. The objective of the work carried out in this thesis was to investigate the topology and structure of the PcCir2 protein of Plasmodium chabaudi, using E. coli as the expression host. The topology of Cir2 has been examined by means of reporter fusions and overexpression/purification studies undertaken towards crystallisation. As the PcCir2 amino acid sequence does not show significant homology to other proteins, structural data may provide insights into potential functional or binding domains.

A crescente emissão do CO2 para a atmosfera, causada pela matriz energética dependente dos combustíveis fósseis tem gerado a necessidade de sistemas que o utilizem como matéria-prima para a produção ou armazenamento de energia. Em vista disso, este trabalho teve como objetivo o estudo do ciclo de estocagem de hidrogênio baseado em etapas eletrocatalíticas da eletro-redução e eletro-oxidação do par CO2/HCOO-. Para o processo de eletro-redução, foram utilizados eletrocatalisadores suportados em pó de carbono formados à base de estanho (Sn/C) e de estanho modificado com cobalto (Co-Sn/C), cobre (Cu-Sn/C) e paládio (Sn-Pd/C). Os materiais foram sintetizados pelo método de impregnação seguido por tratamento térmico e caracterizados fisicamente por Difratometria de Raios X (DRX) e Espectroscopia por energia Dispersiva de Raios X (EDX). Os testes eletroquímicos foram realizados via cronoamperometria (eletrólise) e a quantificação dos íons formato por Cromatografia Líquida de Alta Eficiência (CLAE) e voltametria cíclica (VC). Os resultados obtidos mostraram que os materiais nanoestruturados sintetizados apresentaram estruturas cristalinas, sendo que o estanho apresentou-se na forma de SnO2, mas sofrendo eletro-redução em condições in situ para SnO ou SnOH. Os resultados eletroquímicos mostraram que o Sn/C eletrocatalisa a redução do CO2 para HCOO-, sendo que a quantificação por VC utilizando eletrodos de paládio e platina indicaram correntes de pico crescentes até o potencial de eletrólise de -1,6 V vs. Ag/AgCl/Cl-. Ademais, experimentos de eletrólise evidenciaram o aumento linear da concentração de HCOO- após 6 horas de polarização, indicando alta estabilidade do eletrocatalisador de Sn/C. A atividade eletrocatalítica dos eletrocatalisadores à base de estanho frente a redução de CO2 para HCOO- foi atribuída a dois aspectos: (i) o estanho favorece a adsorção ou interação do CO2 através dos átomos de oxigênio, possibilitando a transferência de prótons e elétrons sem a quebra da ligação C-O e/ou; (ii) a presença de espécies SnOH na superfície, mesmo em baixos potenciais, permite a interação com o CO2 e leva à formação de intermediários adsorvidos reativos, que sofrem a adição de prótons e elétrons para a formação de HCOO-. A eficiência máxima de corrente faradaica para a formação de HCOO- foi de aproximadamente 7 % tendo a reação de desprendimento de hidrogênio (HER) como rota paralela. A investigação da influência da natureza do eletrocatalisador mostrou inatividade do material de Co-Sn/C, mas com aumento da atividade de Cu-Sn/C para a eletro-redução de CO2, quando comparado com Sn/C puro. / With the increase CO2 emissions into atmosphere caused mainly by the energy dependence on fossil fuels, systems for generation or storage of clean energy has been studied to couple CO2 as feedstock. This work proposed a hydrogen storage cycle based on electrocatalytic steps of pair CO2/HCOO-, such electroreduction and electrooxidation. For electroreduction process were used carbon-supported tin-based electrocatalysts (Sn/C) and tin modified with cobalt (Co-Sn/C), copper (Cu-Sn/C) and palladium (Sn-Pd/C). The materials were synthesized by impregnation method followed of thermal treatment, and X Ray Diffraction (XRD) and Energy Dispersive X-ray Spectroscopy (EDS) techniques were used for physical characterization. Electrochemical tests were performed via chronoamperometry (electrolysis) and the quantification of formate ions by High Performance Liquid Chromatography (HPLC) and cyclic voltammetry (CV). Results of synthesized nanostructured materials showed crystalline structures with tin as SnO2 species, but tin oxide suffering electroreduction to SnO or SnOH in situ conditions. Electrochemical results presented that the Sn/C catalyzes the CO2 reduction to HCOO-, with an increase peak current until electrolysis potential of -1.6 V vs. Ag/AgCl/Cl- quantified by CV on palladium and platinum electrodes. Moreover, electrolysis measurements demonstrated the linear increase of HCOO- concentration after polarization for 6 hours, which indicates the high stability of Sn/C electrocatalyst. The electrocatalytic activity of tin-based electrocatalysts for CO2 reduction into HCOO- was attributed to two aspects: (i) tin favors the adsorption or interaction of CO2 through oxygen atoms, which enables the proton and electron transfer without breaking C-O bond and/or; (ii) the presence on surface of SnOH species allows the interaction with CO2 even at low potential, and leads to the formation of reactive intermediates adsorbed that undergo addition of protons and electrons to form HCOO-. Maximum Faradaic efficiency for HCOO- formation was near 7% with Hydrogen Evolution Reaction (HER) as parallel route. Investigation of the influence of the electrocatalyst nature showed inactivity of CO-Sn/C material, but the activity of CO2 electroreduction increased on Cu-Sn/C material as compared to Sn/C pure.

How the fast (femtosecond-picosecond, fs-ps) protein dynamics contribute to enzymatic function has gained popularity in modern enzymology. With multiple experimental and theoretical studies developed, the most challenging part is to assess both the chemical step kinetics and the relevant motions at the transition state (TS) on the fast time scale. Formate dehydrogenase (FDH), which catalyzes a single hydride transfer reaction, is a model system to address this specific issue. I have crystallized and solved the structure of FDH from Candida boidinii (CbFDH) in complex with NAD+ and azide. With the guidance of the structure information, two active site residues were identified, V123 and I175, which could be responsible for the narrow donor-acceptor-distance (DAD) distribution observed in the wild type CbFDH. This thesis describes studies using kinetic isotope effects (KIEs) and their temperature dependence together with two-dimensional infrared spectroscopy on the recombinant CbFDH and its V123 and I175 mutants. Those mutants were designed to systematically reduce the size of their side chain (I175V, I175A, V123A, V123G and double mutant I175V/V123A), leading to broader distribution of DADs. The kinetic experiments identified a correlation between the DAD distribution and the intrinsic KIEs. The contribution of the fs-ps dynamics was examined via two-dimensional infrared spectroscopy (2D IR) by measuring the vibrational relaxation of TS analog inhibitor, aizde, reflecting the TS environmental motions. Our results provide a test of models for the kinetics of the enzyme-catalyzed reaction that invokes motions of the enzyme at the fs-ps time scale to explain the temperature dependence of intrinsic KIEs.

La stabilité d'un verre est liée à sa composition et l'environnement contrôle son altération. Pour les verres historiques, les polluants organiques émis par les vitrines en bois interviennent dans leur altération. Ce travail étudie les mécanismes d'altération des acides acétique et formique et du formaldéhyde sur des objets de musée et des verres vieillis artificiellement, de composition sodique. Après détermination de la composition par microsonde électronique, la décomposition des spectres Raman a servi à établir des corrélations entre composition et structure des verres, et à interpréter les variations de structure entre verre sain et altéré. La structure des objets altérés par les polluants est caractéristique d'une altération par lixiviation, où seuls les silicates liés aux alcalins sont transformés en silanols, qui polymérisent par la suite. Les profils de concentrations SIMS de verres vieillis en atmosphères artificielles et réelles ont permis de suivre l'altération en fonction du temps, l'humidité et la concentration en polluants. Le film d'eau formé à la surface par l'humidité et son acidité contrôlent l'altération par lixiviation des alcalins et hydratation du verre. Le formaldéhyde n'agit pas sur la réaction de lixiviation tandis que les acides l'accélèrent et l'amplifient. Quelques soient les proportions des polluants, les composés formates prédominent dans les produits cristallins, même en faible concentration d'acide formique. L'humidité et la température fluctuante des musées entretiennent la réaction de lixiviation. L'évidence du rôle néfaste des polluants organiques acides dans l'altération des verres sodiques permettra d'améliorer leur conservation.