Le photosystème II (PSII) est un complexe multi-protéique qui utilise l'énergie solaire pour oxyder l'eau et réduire des quinones. Le site catalytique d'oxydation de l'eau est localisé coté lumen du complexe, alors, que le site de réduction comprenant deux quinones (QA et QB) et un fer non-hémique est localisé sur le coté stromal du complexe membranaire. Dans cette thèse j'ai étudié les deux cotés accepteur et donneur d'électrons du PSII.QA*- et QB*- sont couplés magnétiquement au fer non-hémique donnant de faibles signaux RPE. Le fer non-hémique possède quatre ligands histidines et un ligand (bi)carbonate échangeable. Le formate peut échanger le ligand (bi)carbonate induisant un ralentissement dans le transfert d'électrons. Ici, je décris une modification du signal RPE de QB*- Fe2+ lorsque le formate est substitué au (bi)carbonate. J'ai aussi découvert un second signal RPE dû à la présence du formate à la place du (bi)carbonate lorsque QB est doublement réduit. De plus, j'ai trouvé que les signaux RPE natifs de QA*- Fe2+ et QB*- Fe2+ possèdent une signature intense encore jamais détectée. Tous les signaux RPE rapportés dans cette thèse devraient faciliter le titrage redox de QB par RPE. J'ai aussi observé que QB*- peut oxyder le fer non-hémique à l'obscurité en anaérobie. Cette observation implique qu'au moins dans une fraction des centres, le couple QB*-/QBH2 possède un potentiel redox plus haut que supposé. La quantification du nombre de centres où cette oxydation du fer se produit par le couple QB*-/QBH2 reste à faire. La réduction du PSII par le dithionite génère un signal modifié de QA*-Fe2+, un changement structural du PSII observé par électrophorèse. Cela peut indiquer la réduction d'un pont disulfure à l'intérieur du PSII. Concernant le site d'oxydation de l'eau, j'ai étudié la première étape de l'assemblage du site catalytique (Mn4Ca), en suivant l'oxydation du Mn2+ par RPE en bande X et haut champ. J'ai mis au point des conditions expérimentales permettant le piégeage du premier intermédiaire et j'ai aussi trouvé une incohérence avec des travaux publiés dans la littérature. J'ai aussi trouvé que le dithionite pouvait réduire le site catalytique Mn4Ca, en formant des états sur-réduits qui peuvent correspondre aux intermédiaires de l'assemblage du cluster Mn4Ca.

Alcohol abuse during pregnancy has been associated with Fetal Alcohol Spectrum Disorder (FASD). Research to date has focused on the role played by ethanol in the development of this disorder. In addition to ethanol, alcoholic drinks also contain methanol. Hence, consumption of alcohol can also lead to methanol accumulation. Methanol is metabolized to formaldehyde, which is then rapidly metabolized to formate, a toxic metabolite. Folate, a B-vitamin and antoxidant, is a cofactor in the metabolism of formate. This study assessed the relationship between formate and folate, formate kinetics in folate deficiency and, changes in antioxidant capacity during formate insult in folate deficiency. The findings of this study would lead to a better understanding of the role of formate in the development of the etiology of FASD and form the basis of future research. The relationship between formate and folate was investigated in intoxicated human female subjects, sober drug rehabilitating females and, pregnant women. A negative (inverse) relationship was observed between plasma formate and folate in pregnant sober women (correlation coefficient = -0.4989). Such a relationship, however, was not observed in whole blood in alcohol intoxicated (correlation coefficient = 0.0899) and detox women (correlation coefficient = 0.2382). Because of the health promoting ingredients in grain and fruit based alcoholic drinks, antioxidant B-vitamins were higher during intoxication while homocysteine levels were lower.<p>Formate kinetics during folate deficiency and changes in the body antioxidant capacity was investigated in folate deficient young swine. Folate deficiency altered formate kinetics leading to decreased systemic clearance (by approximately 2.3 fold), increased half-life (by 2.5 fold) and, consequently increased exposure (by 2.7 fold). Folate deficiency alone compromised antioxidant capacity. However, the combination of folate deficiency and formate insult further compromised antioxidant capacity.<p>In conclusion, methanol accumulates after alcohol intoxication, which can lead to formate build up in the body. During folate deficiency formate kinetics is altered leading to reduced formate clearance and increased exposure. Exposure to formate coupled to folate deficiency compromises antioxidant capacity, which can have deleterious effects on the fetus.

Anjoner från de tre korta organiska syrorna: acetat, format och MSA är intressanta att mäta då de kan användas för olika sorters miljöstudier. Jonkromatografen vid Institutionen för Geovetenskaper kan för närvarande inte skilja på dessa tre ämnen, därför utvecklades sex nya metoder i detta projekt för att lösa problemet. Metod 5 visade sig vara den bästa, där acetat och format separerades. Resultatet ansågs vara bra, även om MSA inte separerades. Metod 5 testades sedan på ett par naturliga prover; vatten-, snö- och isprover. Alla dessa prover visade en större mängd av format än acetat, som i vissa fall inte ens visades. Resultaten verkade rimliga, inte många av dem stack ut i jämförelse till andra resultat av samma fas. Det ytligaste provet från Lomonosovfonnaglaciären skiljer sig dock ganska mycket i mängden format jämfört med prover från andra djup av denna iskärna, förmodligen på grund av kontamination vid hanteringen av proverna både vid provtagningen och i labbet. MSA kan dock även mätas om man vet mängden acetat och format i provet. Detta görs genom tillsats av kända mängder av MSA till samma prov i efterföljande körningar, för att sedan kunna beräkna koncentrationen av MSA i provet. Problemet med denna metod är att koncentrationen av MSA måste vara tillräckligt hög i kontrast till koncentrationerna av acetat och format för att få tillförlitliga resultat, vilket den inte var i det här projektets analyserade prover. / Anions from three short organic acids: acetate, formate and MSA are interesting to measure since they can be used for different environmental studies. The ion-chromatographer at the Department of Earth Sciences is currently not able to separate these three substances; therefore six new methods were developed in this project to solve this problem. Short organic test 5 ended up to be the best method, where acetate and formate were separated. The result was considered good, even if MSA were not separated. Method 5 was then tested on a couple of natural water, snow and ice samples. All these samples showed a larger amount of formate than of acetate, which in some cases was not even found. The results seemed plausible; not many of them were sticking out compared to others of the same phase. The shallowest sample from the Lomonosovfonna ice cap did however differ quite a lot in amount of formate compared with samples from other depths of this ice core; probably because of contamination which could have occurred at both the ice cap and in the lab during the handling of the samples. MSA can however also be measured if the amount of acetate and formate in the sample is known. This is done by adding known amounts of MSA to the same sample in subsequent runs to then be able to calculate the concentration of MSA in the sample. The problem with the use of this method is that the concentration of MSA needs to be high enough in contrast to acetate and formate in order to get reliable results, which was not the case in the samples measured in this project.

Biofuels that are renewable and environmentally benign constitute an important area of research, as the supply of fossil fuels decreases and the amount of green house gases in the atmosphere increases. Biohydrogen is not as well explored as other biofuels, but its properties render it a promising complement, as it is clean and can be used directly in fuel cells to generate electricity, the only waste products being water and heat. Hydrogenproducing microorganisms have the potential to be used to recycle industrial waste, such as carbohydrates from food manufacturing. Hence the cost of waste disposal could be reduced whilst biofuel is being produced through microbial processes. Escherichia coli is a well-known microorganism that produces hydrogen under fermentative conditions, through the conversion of formate to hydrogen gas and carbon dioxide, via an enzyme complex called formate hydrogenlyase (FHL). The complex is anchored to the inner cell membrane and consists of seven subunits: a formate dehydrogenase, a [Ni-Fe] hydrogenase, three electron carrier proteins, which together make up a large ‘hydrophilic domain’, and two integral membrane proteins (the ‘membrane domain’). Even though the entire bacterial genome is known, the FHL complex remains little understood and has proven difficult to isolate and characterise. During this project, a genetically modified strain producing only the hydrophilic domain of FHL was constructed, and the resultant sub-complex was purified. It was hoped that, if a stable and homogenous core complex could be isolated, it might be subjected to further analysis, such as elucidating the subunit stoichiometry and solving the structure. Furthermore, FHL is notoriously oxygen labile, which hampers its study and technological development. However, oxygen tolerance is a natural feature found in some other [Ni-Fe] hydrogenases, and recent research shows that this property is likely dependent on the presence of extra cysteine residues near an important metal cluster in the enzyme. These cysteines are not present in FHL and a complex that could be active in both aerobic and anaerobic conditions may be a useful tool in optimising microbial biohydrogen processes. Thus, three strains that each expressed a modified FHL variant carrying single Cysteine-for-Glycine substitutions were constructed. The modified FHL complexes proved to remain active in vivo, and can serve as the basis of genetically engineering oxygen tolerance into this important enzyme.

Alcohol abuse during pregnancy has been associated with Fetal Alcohol Spectrum Disorder (FASD). Research to date has focused on the role played by ethanol in the development of this disorder. In addition to ethanol, alcoholic drinks also contain methanol. Hence, consumption of alcohol can also lead to methanol accumulation. Methanol is metabolized to formaldehyde, which is then rapidly metabolized to formate, a toxic metabolite. Folate, a B-vitamin and antoxidant, is a cofactor in the metabolism of formate. This study assessed the relationship between formate and folate, formate kinetics in folate deficiency and, changes in antioxidant capacity during formate insult in folate deficiency. The findings of this study would lead to a better understanding of the role of formate in the development of the etiology of FASD and form the basis of future research. The relationship between formate and folate was investigated in intoxicated human female subjects, sober drug rehabilitating females and, pregnant women. A negative (inverse) relationship was observed between plasma formate and folate in pregnant sober women (correlation coefficient = -0.4989). Such a relationship, however, was not observed in whole blood in alcohol intoxicated (correlation coefficient = 0.0899) and detox women (correlation coefficient = 0.2382). Because of the health promoting ingredients in grain and fruit based alcoholic drinks, antioxidant B-vitamins were higher during intoxication while homocysteine levels were lower.<p>Formate kinetics during folate deficiency and changes in the body antioxidant capacity was investigated in folate deficient young swine. Folate deficiency altered formate kinetics leading to decreased systemic clearance (by approximately 2.3 fold), increased half-life (by 2.5 fold) and, consequently increased exposure (by 2.7 fold). Folate deficiency alone compromised antioxidant capacity. However, the combination of folate deficiency and formate insult further compromised antioxidant capacity.<p>In conclusion, methanol accumulates after alcohol intoxication, which can lead to formate build up in the body. During folate deficiency formate kinetics is altered leading to reduced formate clearance and increased exposure. Exposure to formate coupled to folate deficiency compromises antioxidant capacity, which can have deleterious effects on the fetus.

Accelerating and mineral admixtures, one of the major ingredients in concrete, are primarily used to modify the properties of both fresh and hardened concrete. Within the scope of this thesis, there were four types of cements having almost identical fineness. The mixes were prepared by using natural pozzolan, blast furnace slag and limestone conforming to TS EN 197-1 and two types of accelerating admixtures, namely triethanolamine (TEA) and calcium formate (CF). The effect of set accelerating admixtures with different cement types on the setting time, water demand and compressive strength has been analyzed by an experimental study in accordance with relevant ASTM standards. Finally, it has been observed that the amount of the accelerating admixtures used is suitable because of their effects on the water demand, setting and strength. Due to the density difference of mineral admixtures and clinker, the normal consistency and 110% flow water content should be considered on a volumetric basis. The effectiveness of the accelerating admixtures on the normal consistency water, 110% flow water content and setting time depends on the type and amount of mineral admixtures. The increase caused by CF in the normal consistency and 110% flow water content is higher than that by TEA. The accelerating effect of TEA and CF on the setting times is more significant for cements incorporating 6% mineral admixture. The effects of accelerating admixtures on the compressive strength change with specimen age, type and amount of mineral admixtures. Generally, for all cement types, early age compressive strengths increase with the increase of TEA, however long term strengths increase by increasing CF.

Arthrobacter sp. yra dirvoje paplitusios bakterijos, kurios gali prisitaikyti prie nepalankių aplinkos sąlygų, tokių kaip osmosinis šokas ar maisto medžiagų trūkumas. Osmoreguliacijoje daugelis organizmų naudoja glicino betainą. Yra žinoma, kad Arthrobacter globiformis bakterijos gali panaudoti glicino betainą kaip anglies ir azoto šaltinį, tačiau nebuvo aišku, ar Arthrobacter globiformis gali šią medžiagą naudoti kaip osmoprotektorių. Iš Arthrobacter globiformis buvo klonuotas DNR fragmentas, kuriame buvo identifikuoti genai, kurie tiesiogiai ir netiesiogiai dalyvauja glicino betaino katabolizme. Struktūrinė genų organizacija leidžia manyti, kad šios bakterijos gali panaudoti glicino betainą kaip osmoprotektorių, Taip pat buvo įdomu patikrinti, ar tokią funkciją glicino betainas gali vykdyti ir kitose A. globiformis giminingose bakterijose. Tyrimui buvo pasirinkti tipiniai Arthrobacter genties bakterijų kamienai (A. atrocyaneus, A. citreus, A. crystalopoietes, A. globiformis, A. ramosus, A. sulfureus bei Arthrobacter spp. (KA3, P3, KA2V2, PY22, KA2, GAZ21, P2G, KA4, KA2V3, GAZ3, PRH1, PY21, VM22, VP23, RD1, VM22, VP22, VP3, VPW7, VPS4, 96, 94, 85, 68M, 83 68B, BL-3 ir 1-IN). Darbo metu paaiškėjo, kad šį junginį apsaugai nuo osmosinio streso naudoja tik dalis Arthrobacter genties bakterijų. Glicino betainas artrobakterėse dažniau naudojamas kaip anglies šaltinis. / Arthrobacter spp. are wide-spread soil bacteria, which are adapted to grow under osmotic stress and shortage in available carbon (energy) sources. Many organisms utilise glycine betaine as an osmoprotectant. It is known, that Arthrobacter globiformis can use glycine betaine as a sole carbon and nitrogen source, however, it is unclear whether this bacterium use this substrate as osmoprotectant. A DNA fragment harbouring genes, which directly and indirectly are involved in glycine betaine degradation, was cloned from A. globiformis. The structural organization of these genes suggested, that this bacterium could use glycine betaine as an osmoprotectant. So, it was tested if other Arthrobacter spp. strains use glycine betaine to protect from osmotic stress. Typical Arthrobacter sp. strains (A. atrocyaneus, A. citreus, A. crystalopoietes, A. globiformis, A. ramosus, A. sulfureus and Arthrobacter spp. (KA3, P3, KA2V2, PY22, KA2, GAZ21, P2G, KA4, KA2V3, GAZ3, PRH1, PY21, VM22, VP23, RD1, VM22, VP22, VP3, VPW7, VPS4, 96, 94, 85, 68M, 83 68B, BL-3 and 1-IN) were chosen in this study. It turned out, that less than a half of studied strains use glycine betaine as osmoprotectant. The arthrobacters used glycine betaine more as a sole carbon source than as an osmoprotectant.

A crescente emissão do CO2 para a atmosfera, causada pela matriz energética dependente dos combustíveis fósseis tem gerado a necessidade de sistemas que o utilizem como matéria-prima para a produção ou armazenamento de energia. Em vista disso, este trabalho teve como objetivo o estudo do ciclo de estocagem de hidrogênio baseado em etapas eletrocatalíticas da eletro-redução e eletro-oxidação do par CO2/HCOO-. Para o processo de eletro-redução, foram utilizados eletrocatalisadores suportados em pó de carbono formados à base de estanho (Sn/C) e de estanho modificado com cobalto (Co-Sn/C), cobre (Cu-Sn/C) e paládio (Sn-Pd/C). Os materiais foram sintetizados pelo método de impregnação seguido por tratamento térmico e caracterizados fisicamente por Difratometria de Raios X (DRX) e Espectroscopia por energia Dispersiva de Raios X (EDX). Os testes eletroquímicos foram realizados via cronoamperometria (eletrólise) e a quantificação dos íons formato por Cromatografia Líquida de Alta Eficiência (CLAE) e voltametria cíclica (VC). Os resultados obtidos mostraram que os materiais nanoestruturados sintetizados apresentaram estruturas cristalinas, sendo que o estanho apresentou-se na forma de SnO2, mas sofrendo eletro-redução em condições in situ para SnO ou SnOH. Os resultados eletroquímicos mostraram que o Sn/C eletrocatalisa a redução do CO2 para HCOO-, sendo que a quantificação por VC utilizando eletrodos de paládio e platina indicaram correntes de pico crescentes até o potencial de eletrólise de -1,6 V vs. Ag/AgCl/Cl-. Ademais, experimentos de eletrólise evidenciaram o aumento linear da concentração de HCOO- após 6 horas de polarização, indicando alta estabilidade do eletrocatalisador de Sn/C. A atividade eletrocatalítica dos eletrocatalisadores à base de estanho frente a redução de CO2 para HCOO- foi atribuída a dois aspectos: (i) o estanho favorece a adsorção ou interação do CO2 através dos átomos de oxigênio, possibilitando a transferência de prótons e elétrons sem a quebra da ligação C-O e/ou; (ii) a presença de espécies SnOH na superfície, mesmo em baixos potenciais, permite a interação com o CO2 e leva à formação de intermediários adsorvidos reativos, que sofrem a adição de prótons e elétrons para a formação de HCOO-. A eficiência máxima de corrente faradaica para a formação de HCOO- foi de aproximadamente 7 % tendo a reação de desprendimento de hidrogênio (HER) como rota paralela. A investigação da influência da natureza do eletrocatalisador mostrou inatividade do material de Co-Sn/C, mas com aumento da atividade de Cu-Sn/C para a eletro-redução de CO2, quando comparado com Sn/C puro. / With the increase CO2 emissions into atmosphere caused mainly by the energy dependence on fossil fuels, systems for generation or storage of clean energy has been studied to couple CO2 as feedstock. This work proposed a hydrogen storage cycle based on electrocatalytic steps of pair CO2/HCOO-, such electroreduction and electrooxidation. For electroreduction process were used carbon-supported tin-based electrocatalysts (Sn/C) and tin modified with cobalt (Co-Sn/C), copper (Cu-Sn/C) and palladium (Sn-Pd/C). The materials were synthesized by impregnation method followed of thermal treatment, and X Ray Diffraction (XRD) and Energy Dispersive X-ray Spectroscopy (EDS) techniques were used for physical characterization. Electrochemical tests were performed via chronoamperometry (electrolysis) and the quantification of formate ions by High Performance Liquid Chromatography (HPLC) and cyclic voltammetry (CV). Results of synthesized nanostructured materials showed crystalline structures with tin as SnO2 species, but tin oxide suffering electroreduction to SnO or SnOH in situ conditions. Electrochemical results presented that the Sn/C catalyzes the CO2 reduction to HCOO-, with an increase peak current until electrolysis potential of -1.6 V vs. Ag/AgCl/Cl- quantified by CV on palladium and platinum electrodes. Moreover, electrolysis measurements demonstrated the linear increase of HCOO- concentration after polarization for 6 hours, which indicates the high stability of Sn/C electrocatalyst. The electrocatalytic activity of tin-based electrocatalysts for CO2 reduction into HCOO- was attributed to two aspects: (i) tin favors the adsorption or interaction of CO2 through oxygen atoms, which enables the proton and electron transfer without breaking C-O bond and/or; (ii) the presence on surface of SnOH species allows the interaction with CO2 even at low potential, and leads to the formation of reactive intermediates adsorbed that undergo addition of protons and electrons to form HCOO-. Maximum Faradaic efficiency for HCOO- formation was near 7% with Hydrogen Evolution Reaction (HER) as parallel route. Investigation of the influence of the electrocatalyst nature showed inactivity of CO-Sn/C material, but the activity of CO2 electroreduction increased on Cu-Sn/C material as compared to Sn/C pure.

Actinobacillus succinogenes cells were grown on Poraver® support particles in a packed-bed reactor. Dilution rates (D) of 0.054–0.72 h-1 were investigated. Glucose was used as substrate. CO2 (g) was bubbled into a complex medium to satisfy the fixation requirements and maintain anaerobic conditions. At D ≥ 0.31 h-1, an initial glucose concentration of 35 g.L-1 was used; at lower dilution rates, this was increased to 60 g.L-1 in order to avoid substrate limitations. By-product formation included acetic and formic acids. A maximum productivity of 10.7 g.L-1 was obtained at D = 0.7 h-1. It was found that the system provided repeatable results at a given D. The longest steady state period was maintained for about 97 h at D = 0.31 h-1. Steady state stability was maintained for > 72 h at D < 0.31 h-1. For periods longer than 75 h, however, inhibitory acid titres resulted in a gradual decline in productivity. At higher dilution rates, long-term stability could not be maintained. The low acid titres produced significant biofilm sloughing following aggressive biofilm growth, resulting in oscillatory system behaviour. For fermentation times < 115 h, the dilution rate was secondary to the attachment area in determining the total biomass at steady state. Total biomass values were then used to determine specific rates. A clear trend was observed, with the specific glucose consumption rate, and specific acid production rates, increasing with increasing D. This was explained by assuming a maintenance-driven system at all Ds studied. A product analysis indicated that at ΔS < 15 g.L-1, pyruvate formate lyase was the preferred oxidative route. A shift to the pyruvate dehydrogenase pathway occurred at higher ΔS values, so that the highest YSS values obtained exceeded 0.85 g.g-1. A decrease in C3 by-product formation resulted in high YSS values being maintained, indicating an additional, unknown source of nicotinamide adenine dinucleotide (NADH). It is recommended that any process utilising immobilised A. succinogenes cells should operate at an intermediate D, in order to maintain long-term reactor stability, high productivities and good yields. / Dissertation (MEng)--University of Pretoria, 2013. / gm2014 / Chemical Engineering / unrestricted

The industrial revolution caused the release of carbon dioxide (CO2) into the atmosphere leading to a climate crisis. The impact of more CO2 in the atmosphere has been experienced by everybody. The summers are longer and hotter, while the winters are colder and shorter. The ocean water has become more acidic threatening the ocean life. There is an immediate need to reduce CO2 and switch to alternate energy for human survival. Electrochemical reduction of CO2 (ERC) is a promising technology capable of converting excess CO2 into valueded products. The process of recycling CO2 can address the problem of excess CO2 and is a sustainable solution until our dependence on fossil fuels is reduced. However, currently there are very few catalysts that can convert CO2 into valuable products with a low overpotential. The current research evaluates new catalysts for their ERC potential. [Ni(cyclam)]2+ is a well-known catalyst used to reduce CO2 homogeneously. Therefore, it was used as a standard to optimize the CO2 evaluation protocol. Two new catalysts developed in Dr. Hollis's laboratory, a Pt- pincer and a Fepincer molecule were assessed using this method. Cyclic voltammetry and bulkelectrolysis (BE) experiments were performed under Ar and CO2 environments. The gaseous products from BE were primarily CO and H2 and their quantitative measurement was performed using gas chromatography. Formate determination was performed using UV-Vis spectroscopy. Faradaic yields were calculated for CO, H2, and formate. The overpotentials were calculated for all the processes, and a comparison was made to determine the most efficient process. The turnover numbers (TON) and the turnover frequencies (TOF) of all the catalysts were calculated. Based on all the criteria, the Fepincer complex was determined to be the most promising catalyst for further optimization. Additionally, a Faradaic efficiency calculation spreadsheet was created to improve calculation efficiency. The protocol described here has been successfully applied to assess new catalysts and can prove to be an invaluable tool when numerous catalysts require evaluation.