A cascade of metabolomic studies have been developed in the recent decade. The application of metabolomics in the clinical field has been shown to be promising since even subtle physiological changes can be revealed by a metabolomic study which determines variations in the metabolome.Personalized clinical care is currently proposed for almost all the diseases, however, it is still difficultto be executed for the scarce of clinical biomarkers. This thesis work concerns the applications of both ¹H NMR-based and MS-based metabolomics in the determination of potential serumbiomarkers which help to improve personalized diagnosis and prognosis. It is composed by twoprincipal parts. The first part of the work aims to find out metabolite biomarkers predicting themortality of septic shock before clinical intervention and first 12 hours after hospitalization using NMR-based and LC-MS-based metabolomic methods respectively. The goal of the second part of the work is to seek potential biomarkers predicting the recurrence of HCC before and after RFA treatment. Our findings not only show that both the two applied techniques were useful for the discovery of novel clinical biomarkers, but also show that the two techniques are complementary / De nombreuses études métabolomiques a été développée au cours de la dernière dizaine année.L'application de la métabolomique dans le traitement clinique s'est révélée prometteuse puisque même des faibles modifications physiologiques peuvent être révélées par une étude métabolomique. Des soins cliniques personnalisés sont actuellement proposés pour presque toutes les maladies, mais il est encore difficile de les réaliser à cause du manque de biomarqueurs cliniques. Ce travail de thèse a pour le but de la détermination de biomarqueurs cliniques par la spectroscopie RMN et par la spectrométrie de masse. Il est composé de deux parties : la première partie du travail vise à déterminer les biomarqueurs des métabolites prédisant la mortalité du choc septique avant l'intervention clinique et les 12 premières heures après l'hospitalisation en utilisant respectivement des méthodes métaboliques basées sur la RMN et la LC-MS. L'objectif de la deuxième partie du travail est de rechercher des biomarqueurs potentiels prédisant la récidive du CHC avant et après le traitement RFA. Nos résultats montrent non seulement que les deux techniques appliquées ont été utiles pour la découverte de nouveaux biomarqueurs cliniques, maismontrent également que les deux techniques sont complémentaires.

Le foie est un organe qui exerce un rôle majeur dans le contrôle de l’homéostasie métabolique et énergétique de l’organisme en maintenant la glycémie à un taux constant. LKB1 est une sérine-thréonine kinase qui joue un rôle clef dans la physiologie cellulaire en couplant le contrôle du métabolisme au statut énergétique de la cellule. A l’aide de modèles murins ayant une délétion de LKB1 dans les hépatocytes adultes, nous avons identifié un rôle complexe pour LKB1 au sein de l’homéostasie énergétique. L’objectif de ma thèse était de caractériser ce phénotype et d’en comprendre les bases physiologiques. Nos résultats montrent une hyperglycémie à jeun chez les animaux mutants, associée à une perte de masse maigre (muscle), une accumulation du glycogène à jeun et une activation constitutive de la voie de l’insuline, qui, à long terme, conduit à une cachexie. Nos résultats suggèrent que Lkb1 hépatique exercerait un dialogue complexe avec la signalisation insuline dans le contrôle de la gluconéogenèse avec une dépendance énergétique aux acides aminés. Nous avons aussi montré qu’il existait un dialogue complexe entre LKB1 et la voie Wnt/β-caténine dans le foie. En effet, les carcinomes hépatocellulaires (CHC) mutés CTNNB1 ont des caractéristiques phénotypiques en termes de polarité et de métabolisme (absence de stéatose). Nous avons émis l’hypothèse que ce phénotype pouvait être secondaire à l’activation du gène suppresseur de tumeurs LKB1. Les mutations CTNNB1 sont en effet capable d’induire l’expression protéique de LKB1 dans les lignées hépatomateuses humaines, et les CHC mutés CTNNB1 présentent une expression protéique accrue de LKB1. De plus, dans deux modèles murins d’invalidation hépatospécifique de Lkb1, LKB1 est apparu comme requis pour l’activation du programme transcriptionnel de β-caténine mais de façon dépendante du stade de développement et du contexte nutritionnel. / The liver plays a major role in the control of both metabolic and energetic homeostasis in the body by maintaining glycemia. LKB1 is a serine-threonine kinase that plays a crucial role in cell physiology by controlling cell metabolism and cell energetic status. Using murine model with LKB1 hepatospecific deletion, we identified a complex role for LKB1 in energy homeostasis. The aim of my thesis was to characterize this phenotype and to understand its physiological basis. Our results show a hyperglycemia at fasted state in mutants animals, associated with a loss of dry mass, a glycogen accumulation and a constitutive activation of insulin signaling, which leads to a cachexia at long term. Our results suggest that hepatic Lkb1 is involved in a cross talk with insulin signaling in the control of neoglucogenesis with amino acid dependence. We also showed a cross talk between LKB1 and Wnt/β-catenin signaling in the liver. Indeed, CTNNB1-mutated hepatocellular carcinoma (HCC) have phenotypic features in terms of polarity and metabolism (lack of lipid accumulation). Our hypothesis is that this phenotype would be secondary to the activation of the tumour suppressor gene LKB1. CTNNB1 mutations induce LKB1 proteic expression in human hepatoma cell lines and CTNNB1-mutated HCC show an increased proteic LKB1 expression. In two murine models of Lkb1 hepatospecific invalidation, LKB1 seems to be necessary for the activation of the β-catenin transcriptional program in a way that is dependent on developpemental state and nutritional context.

Mémoire numérisé par la Division de la gestion de documents et des archives de l'Université de Montréal

Purpose: To evaluate the efficiency of a multimodality approach consisting of transcatheter arterial chemoembolization (TACE) and radiofrequency ablation (RFA) as bridging therapy for patients with hepatocellular carcinoma (HCC) awaiting orthotopic liver transplantation (OLT) and to evaluate the histopathological response in explant specimens. Materials and Methods: Between April 2001 and November 2011, 36 patients with 50 HCC nodules (1.4–5.0 cm, median 2.8 cm) on the waiting list for liver transplantation were treated by TACE and RFA. The drop-out rate during the follow-up period was recorded. The local efficacy was evaluated by histopathological examination of the explanted livers. Results: During a median follow-up time of 29 (4.0–95.3) months the cumulative drop-out rate for the patients on the waiting list was 0, 2.8, 5.5, 11.0, 13.9 and 16.7% at 3, 6, 12, 24, 36 and 48 months, respectively. 16 patients (with 26 HCC lesions) out of 36 (44.4%) were transplanted by the end of study with a median waiting list time of 13.7 (2.5–37.8) months. The histopathological examination of the explanted specimens revealed a complete necrosis in 20 of 26 HCCs (76.9%), whereas 6 (23.1%) nodules showed viable residual tumor tissue. All transplanted patients are alive at a median time of 29.9 months. Imaging correlation showed 100% specificity and 66.7% sensitivity for the depiction of residual or recurrent tumor. Conclusion: We conclude that TACE combined with RFA could provide an effective treatment to decrease the drop-out rate from the OLT waiting list for HCC patients. Furthermore, this combination therapy results in high rates of complete tumor necrosis as evaluated in the histopathological analysis of the explanted livers. Further randomized trials are needed to demonstrate if there is a benefit in comparison with a single-treatment approach. / Dieser Beitrag ist mit Zustimmung des Rechteinhabers aufgrund einer (DFG-geförderten) Allianz- bzw. Nationallizenz frei zugänglich.

Objectives: To compare 64-slice contrast-enhanced computed tomography (CT) with 3-Tesla magnetic resonance imaging (MRI) using Gd-EOB-DTPA for the diagnosis of hepatocellular carcinoma (HCC) and evaluate the utility of diffusion-weighted imaging (DWI) in this setting. Methods: 3-phase-liver-CT was performed in fifty patients (42 male, 8 female) with suspected or proven HCC. The patients were subjected to a 3-Tesla-MRI-examination with Gd-EOB-DTPA and diffusion weighted imaging (DWI) at b-values of 0, 50 and 400 s/mm2. The apparent diffusion coefficient (ADC)-value was determined for each lesion detected in DWI. The histopathological report after resection or biopsy of a lesion served as the gold standard, and a surrogate of follow-up or complementary imaging techniques in combination with clinical and paraclinical parameters was used in unresected lesions. Diagnostic accuracy, sensitivity, specificity, and positive and negative predictive values were evaluated for each technique. Results: MRI detected slightly more lesions that were considered suspicious for HCC per patient compared to CT (2.7 versus 2.3, respectively). ADC-measurements in HCC showed notably heterogeneous values with a median of 1.2±0.5×10−3 mm2/s (range from 0.07±0.1 to 3.0±0.1×10−3 mm2/s). MRI showed similar diagnostic accuracy, sensitivity, and positive and negative predictive values compared to CT (AUC 0.837, sensitivity 92%, PPV 80% and NPV 90% for MRI vs. AUC 0.798, sensitivity 85%, PPV 79% and NPV 82% for CT; not significant). Specificity was 75% for both techniques. Conclusions: Our study did not show a statistically significant difference in detection in detection of HCC between MRI and CT. Gd-EOB-DTPA-enhanced MRI tended to detect more lesions per patient compared to contrast-enhanced CT; therefore, we would recommend this modality as the first-choice imaging method for the detection of HCC and therapeutic decisions. However, contrast-enhanced CT was not inferior in our study, so that it can be a useful image modality for follow-up examinations.

Recent studies from our laboratory on the aromatic amine carcinogen, 4-aminobiphenyl (ABP) have shown a significantly lower prevalence of ABP-induced liver tumors in male mice lacking the N-acetyltransferases, and a dramatically lower prevalence in females than in males, but no association of tumor prevalence with strain or sex differences in levels of acute ABP-induced DNA damage. This thesis aimed to investigate the possible involvement of acute cytotoxic effects of ABP in the development of a tumor-promoting inflammatory environment. We found that wild-type male mice showed higher acute hepatotoxicity to ABP, as well as, a possible trend towards higher serum levels of the pro-inflammatory cytokine interleukin 6. This correspondence between acute ABP cytotoxicity and inflammatory response with ultimate tumor growth is consistent with a model whereby ABP not only initiates cells by damaging DNA but also promotes tumor growth in a gender-selective fashion that may be governed by gonadal hormone influences.

Recent studies from our laboratory on the aromatic amine carcinogen, 4-aminobiphenyl (ABP) have shown a significantly lower prevalence of ABP-induced liver tumors in male mice lacking the N-acetyltransferases, and a dramatically lower prevalence in females than in males, but no association of tumor prevalence with strain or sex differences in levels of acute ABP-induced DNA damage. This thesis aimed to investigate the possible involvement of acute cytotoxic effects of ABP in the development of a tumor-promoting inflammatory environment. We found that wild-type male mice showed higher acute hepatotoxicity to ABP, as well as, a possible trend towards higher serum levels of the pro-inflammatory cytokine interleukin 6. This correspondence between acute ABP cytotoxicity and inflammatory response with ultimate tumor growth is consistent with a model whereby ABP not only initiates cells by damaging DNA but also promotes tumor growth in a gender-selective fashion that may be governed by gonadal hormone influences.

L’infection chronique par le virus de l’hépatite C (VHC) conduit au développement de pathologies hépatiques, telles que la fibrose dont le terme évolutif est la cirrhose sur laquelle peut se développer un carcinome hépatocellulaire. Les observations cliniques indiquent que le VHC interfère avec la voie de signalisation du Transforming Growth Factor β (TGFβ). Entre autres fonctions, cette cytokine induit la transition épithélio-mésenchymateuse (EMT), ce qui favorise la migration cellulaire et l'invasion tumorale. Le but de cette thèse est d'analyser l'impact des protéines non structurales du VHC sur la voie de signalisation du TGFβ.Nous avons montré que le réplicon subgénomique du VHC induit une augmentation de la signalisation du TGFβ résultant en une plus forte expression de gènes associés à l’EMT et induisant un phénotype d’EMT. L’expression de la protéase virale NS3-4A seule, augmente et prolonge la phosphorylation de Smad2/3 en aval du récepteur du TGFβ et renforce l’expression de certains gènes cibles du TGFβ. L’analyse des interactions entre les protéines du VHC et les protéines de la voie du TGFβ a permis d’identifier l’interaction entre NS3-4A et la protéine Smurf2. Le réplicon subgénomique ou la protéase NS3-4A ont des rôles antagonistes à la protéine Smurf2 sur la voie de signalisation du TGFβ. L’analyse globale des gènes régulés par le TGFβ dans les cellules exprimant le réplicon subgénomique a permis d’identifier, que dans ces cellules, le TGFβ induit une réponse pro-tumorale.Ces résultats montrent que NS3-4A induit une plus forte réponse des cellules au TGFβ, en inhibant la fonction de Smurf2 dans le rétrocontrôle négatif de la voie du TGFβ. Ce nouveau mécanisme d’interférence du VHC avec la voie du TGFβ pourrait contribuer à l’EMT des cellules hépatocytaires infectées favorisant ainsi la cancérisation. Ce travail apporte de nouvelles pistes dans la compréhension des mécanismes associés à la cancérisation chez les patients chroniquement infectés par le VHC. / Chronic infection by hepatitis C virus (HCV) leads to the development of hepatic diseases like fibrosis which evolves into cirrhosis on which can develop hepatocellular carcinoma. Clinical observations indicate that HCV interferes with the TGFβ signaling pathway. Among other functions this cytokine induces epithelial-to-mesenchymal transition (EMT) promoting cell migration and tumor invasion. The aim of this study is to analyze the impact of HCV non structural proteins on TGFβ signaling pathway. We have demonstrated that the HCV subgenomic replicon induces an enhancement of the TGFβ signaling pathway resulting in a strong expression of EMT associated genes and inducing EMT phenotype. The expression of the NS3-4A viral protein alone enhances and stabilizes Smad2/3 phosphorylation downstream TGFβ receptor and increases the expression of some TGFβ target genes. The analysis of interactions between HCV proteins and proteins of the TGFβ signaling pathway has shown the interaction of NS3-4A with Smurf2 protein. HCV subgenomic replicon and NS3-4A have antagonistic roles to Smurf2 on TGFβ signaling pathway. The global analysis of genes regulated by TGFβ in cells expressing HCV subgenomic replicon indicates that in these cells TGFβ induces a pro-tumor answer.These results show that NS3-4A enhances TGFβ answer by inhibiting Smurf2 functions in the negative feedback loop of the TGFβ pathway. This new mechanism of HCV interference with the TGFβ pathway can contribute to EMT in infected hepatocytes thus promoting carcinogenesis. This work provides new leads to understand the mechanisms associated to carcinogenesis in HCV chronically infected patients.

INTRODUÇÃO: O transplante hepático (TxH) vem mudando o curso de doenças graves, incapacitantes e potencialmente fatais, se tornando o tratamento de escolha quando há falência do órgão. OBJETIVO: Comparar as taxas de TxH, exclusão e sobrevida entre candidatos com cirrose descompensada (CIR), situações especiais (SPE) e carcinoma hepatocelular (HCC). MÉTODOS:Foram realizados dois estudos em 358 pacientes: uma coorte retrospectiva (agosto de 2008 - julho de 2009, incluindo 189 pacientes listados) e uma prospectiva (de novembro de 2012 a maio de 2014, com um período de acompanhamento até novembro de 2015, incluindo 169 candidatos a transplante hepático, comparando CIR, HCC e SPE. Foram avaliadas as seguintes variáveis: K-in (taxas de entrada da lista de espera: K-1in se CIR, K-2in se HCC e K-3in se SPE); K-out (taxa de TxH); K-1out (drop out no grupo CIR); K-2out (drop out no grupo HCC) e K-3out(drop out no grupo SPE). RESULTADOS: Na coorte retrospectiva, 112 casos (59,3%) tinham CIR, 63 (33,3%) com HCC e 14 (7,4%) se enquadraram em SPE. Os tempos médios de avaliação até a inscrição em lista para TxH foram 194 dias (IC 95% 152-236), 36 dias (IC95% 21-50) e 98 dias (IC95% 0-308) para CIR, HCC e SPE, respectivamente (P <0,001). Dos 86 pacientes transplantados (K-out = 45,5%), 31 tinham CIR (K-1in = 27,7%), 44 HCC (K-2in = 69,8%) e 11 SPE (K-3in = 88,6%) (P <0,001). As taxas de drop out foram maiores em CIR (K-1out = 64,3%, K-2out = 30,2%, K-3out = 21,4%, P <0,001). O hazar ratio (HR) para TxH foi 85% (IC95% 1,35-2,55) maior em HCC do que CIR. Na coorte prospectiva, 110 dos 167 pacientes avaliados foram listados (K-in = 65,9%). Os tempos médios de avaliação foram de 783 dias (IC95% 330-1236), 52 dias (IC95% 17-87) e 184 dias (IC95% 19-349) para CIR, HCC e SPE, respectivamente (P <0,001). Em relação ao TxH, o K1-in foi 21,7%, K2-in, 76,4% e K3-in, 92,3 % (P <0,001). K-out foi 57,3% (63/110), K1-out = 50%, K2-out = 21,1% e K3-out = 3,84% (P <0,001). HR para TxH foi 329% superior em HCC do que CIR (HR = 4,29; IC95%: 2,74-6,72). CONCLUSÃO: Neste estudo, os pacientes com cirrose descompensada tiveram um tempo de avaliação para transplante significativamente maior que os outros grupos avaliados, bem como maior taxa de drop out em lista. A taxa de transplante foi significativamente menor nos pacientes com cirrose descompensada, demonstrando que as políticas de alocação de órgãos merecem ser revistas. / INTRODUCTION: Liver transplantation (LT) has been changing the course of serious, incapacitating and potentially fatal diseases becoming the treatment of choice when there is organ failure. AIM: To compare transplant, delisting, and survival rates between candidates with decompensated cirrhosis (CIR), special conditions (SPE), and hepatocellular carcinoma (HCC). METHODS: We carried out two studies with 358 patientes: a retrospective one (Aug 2008-Jul 2009, including 189 enlisted patients) and another prospective (Nov 2012-May 2014, with a follow-up period up to Nov 2015, including 169 LT candidates), comparing CIR, HCC, and SPE. The following variables were assessed: K-in (rates of waitlist entry – K-1in if CIR, K-2in if HCC, and K-3in if SPE); K-out (rate of LT); K-1out (drop-out in CIR); K-2out (drop-out in HCC); and K-3 out (drop-out in SPE). RESULTS: In the retrospective study, 112 cases (59.3%) were due to CIR, 63 (33.3%) to HCC, and 14 (7.4%) to SPE. The average time from selection to enlisting was 194 days (CI95% 152-236), 36 days (CI95% 21-50), and 98 days (CI95% 0-308) for CIR, HCC, and SPE, respectively (P<0.001). Of the 86 transplanted patients (K-out = 45.5%), 31 had CIR (K-1in = 27.7%), 44 HCC (K-2in = 69.8%), and 11 SPE (K-3in = 88.6%) (P<0.001). Drop-out rates were higher in CIR (K-1out = 64.3%, K-2out = 30.2%, K-3out = 21.4%, P<0.001). The hazar ratio (HR) for LT was 85% (CI95% 1.35-2.55) higher in HCC than CIR. In the prospective study, 110 out of 167 evaluated patients were enlisted (K-in = 65.9%). The average time from selection to enlisting was 783 days (CI95% 330-1236), 52 days (CI95% 17-87), and 184 days (CI95% 19-349) for CIR, HCC, and SPE, respectively (P<0.001). Regarding LT, K1-in was 21.7%, K2-in, 76.4%, and K3-in, 92.3% (P<0.001). K-out was 57.3% (63/110), K1-out = 50%, K2-out = 21.1%, and K3-out = 3.84% (P<0.001). HR for LT was 329% times higher in HCC than CIR (HR = 4.29; CI95% 2.74–6.72).CONCLUSION: In this study, patients with decompensated cirrhosis had a time evaluation for transplantation significantly higher than other evaluated groups as well as a higher rate of waiting list drop out. Transplant rate was significantly lower in patients with decompensated cirrhosis, demonstrating that organ allocation policies deserve to be reviewed.

En combinant un nouveau système de culture cellulaire à partir d'hépatocytes différenciés avec du virus de l’hépatite C (VHC) purifié, nous pouvons induire un profil transcriptomique caractéristique des patients à risque élevé de développer un carcinome hépatocellulaire (CHC). En utilisant ce modèle, nous avons découvert le rôle fonctionnel de l'EGFR comme élément moteur de la signature du risque de développement d'un CHC. De plus, nous avons identifié des gènes candidats impliqués dans le développement du CHC. Pour étudier les maladies du foie in vivo, nous avons caractérisé l'expression des protéines phosphatases dans des biopsies hépatiques de patients infectés par le VHC. Nous avons observé une régulation négative de PTPRD, un suppresseur de tumeur, causé par une augmentation de miR-135a-5p qui cible l'ARNm de PTPRD. Par ailleurs, l'analyse in silico montre que l'expression de PTPRD dans le tissu hépatique est corrélée à la survie chez les patients atteints de CHC. / By combining a cell culture system of hepatocyte-like cells with purified hepatitis C virus (HCV), we effectively simulated chronic infection in vitro. We found this infection model induces a transcriptomic profile of chronic HCV patients at high risk of developing hepatocellular carcinoma (HCC). Using this model, we have uncovered the functional role of EGFR as a driver of the HCC risk signature and revealed candidate drivers of the molecular recalibration of hepatocytes leading to liver cancer. In an approach to study liver disease in vivo, we opted to screen for protein phosphatase expression in liver biopsies of chronic HCV patients. We observed a downregulation of PTPRD, a well-known tumor suppressor. We demonstrated that this effect is mediated by an increase in miR-135a-5p which targets PTPRD mRNA. Moreover, in silico analysis shows that PTPRD expression in adjacent liver tissue of HCC patients correlates with survival and reduced tumor recurrence after surgical resection.