<p>The effect of stellar feedback on the interstellar medium is investigated using numerical simulation. In particular, the roles of supernova feedback and ionization feedback on the star formation rate and structure of the interstellar medium are compared. We use Enzo, an adaptive mesh code, and employ the MUSCL-Hancock hydrodynamics scheme to run simulations of a section of a stratified galactic disk. A turbulent velocity field is imposed in the central region of the disk and self-gravity is applied. Star clusters are formed when density and temperature conditions are met, which, in turn, provide ionization and supernova feedback into the interstellar medium. Simulations were run with and without supernova and ionization feedback and the runs are compared. Ionization feedback is found to dominate over supernova feedback in regulating star formation rates. With no feedback, all the gas is converted to stars by 200 Myr. When supernova feedback is added, 98% of the gas is used to create stars by 300 Myr. With ionization feedback instead, at 1 Gyr into the run, only 30% of the gas is in stars. Even with supernova feedback added to ionization feedback, the gas converted to stars is just 29% at 1 Gyr. Very strong supernovae take this fraction down to 25%. The star formation rates in the runs with supernova feedback are consistent with the low end of the Kennicutt-Schmidt relation, while the runs without ionization feedback have star formation rates that are an order of magnitude larger. Gas phase masses and volumes produced in the ionization runs are broadly consistent with observations.</p> / Master of Science (MSc)

The recent availability of X-ray Free Electron Lasers (XFELs) has opened a completely new and unexplored regime for the study of light-matter interactions. The extremely bright intensities delivered by XFELs can couple many photons into the target, turning well known interactions such as photoionization and scattering into new, non-linear, complex many-body phenomena. This thesis reports theoretical investigations aiming to improve the understanding of the fundamental processes and dynamics triggered by intense X-ray pulses, with a special focus in finite systems such as molecules and clusters. Sequential multiple photoionization in atomic clusters was investigated, where previous observations were extended for higher charge states where direct photoionization is frustrated. Through a rate equation study and subsequent molecular dynamics simulations, it was found that frustrated ionization is partially responsible for the low-energy peak observed in the electron energy spectrum. The influence of plasma evaporation over the formation of the sequential low-energy peak was also investigated, identifying the effects of the system size and photon energy. Multiple channel ionization was also investigated for the case of fullerenes. This is done through a series of studies, starting from a simplified rate equation scheme, and culminating with full molecular dynamics simulations. From these results, a good insight was obtained over the origin, physical meaning, and relevant parameters that give rise to the complicated features observed in the electronic spectra. The mechanisms responsible of all these features are expected to be present in other systems, making these results quite general. Diffractive imaging of biomolecules was studied in a final step, with a particular focus on the influence of intramolecular charge transfer mechanisms. To this end a conformer of T4 Lysozyme was used, a representative enzyme with well known structure. Charge migration is found to allow for additional processes such as proton ejection, a mechanism which enables an efficient release of energy from the system. This mechanism considerably suppresses structural damage for heavy ions, improving the quality of the measured diffraction patterns.

Ce manuscrit de thèse s'articule autour de l'étude de l'interaction entre des impulsions lumineuses ultra brèves et des atomes ainsi que des molécules polyatomiques et chirales en phase gazeuse. En utilisant des techniques développées en physique attoseconde ainsi qu'en femtochimie, notre objectif général est de parvenir à une meilleure compréhension des dynamiques ultrarapides photoinduites dans la matière. Pour ce faire, nous avons développé des sources de lumière à ultra brèves dans le proche infrarouge et l’infrarouge moyen, qui ont été utilisées pour construire une source de rayons X dans la fenêtre de l’eau, basée surla génération d'harmoniques d’ordre élevé (GHOE), ainsi que pour l’étude de nouveaux canaux de GHOE impliquant des états hautement excités (Rydberg). Cette dernière étude a démontré une émission harmonique via l'ionisation depuis des états de Rydberg et la recombinaison radiative sur l'état fondamental, attirant ainsi notre intérêt pour le rôle des états de Rydberg en physique des champs forts. Cela nous a conduit à étudier la décroissance libre de l’induction XUV de paquets d'ondes électroniques comme une nouvelle technique de spectroscopie 2D. De plus, nous avons découvert que l'interaction entre un laser intense et un atome préparé dans une superposition cohérente d'états électroniques peut conduire à la génération de lignes hyper-Raman concomitantes avec la GHOE standard. Ce mécanisme avait été prédit lors des premiers calculs théoriques de GHOE, mais n'avait jamais été démontré expérimentalement. Par la suite, nous nous sommes intéressé à l’étude de systèmes moléculaires, dans lesquelles une excitation électronique induite par la lumière peut déclencher des dynamiques nucléaires. Nous avons étudié la photo isomérisation non-adiabatique de l’acétylène cationique en vinylidène cationique ainsi que le contrôle cohérent de la localisation électronique lors de la photodissociation de H2+. La simplicité de ces systèmes moléculaires a permis la comparaison des résultats expérimentaux avec des calculs théoriques de pointe,révélant l'importance du couplage entre les degrés de liberté nucléaires et électroniques lors de dynamiques moléculaires photoinduites.Un autre pilier majeur de cette thèse est l'étude de l'ionisation de molécules chirales avec des impulsions chirales. On sait depuis les années 70 que l'ionisation d'un ensemble de molécules chirales aléatoirement orientées, en utilisant une impulsion polarisée circulairement, conduit à une forte asymétrie avant-arrière dans le nombre de photoélectrons émis, selon l'axe de propagation de la lumière (DichroismeCirculaire de Photoélectron, DCPE). Avant cette thèse, le DCPE a été largement étudié à l’aide du rayonnement synchrotron (ionisation à un photon) et a récemment été démontré avec des lasers femtoseconde, via des schémas d'ionisation multiphotonique. Dans cette thèse, nous avons montré que le DCPE est un effet universel, c'est-à-dire qu'il émerge dans tous les régimes d'ionisation: l'ionisation àun photon, l'ionisation à multiphonique, l'ionisation au-dessus du seuil ainsi que l’ionisation par effet tunnel. Ensuite, nous avons démontré que la combinaison d’approches standard de femtochimie et du DCPE peuvent être utilisées pour suivre des dynamique de molécules chirales photoexcitées. En utilisant des approches expérimentales similaires, avec des séquences d'impulsions ayant des états de polarisation contre-intuitifs, nous avons démontré un nouvel effet chiroptique, appelé Dichroïsme Circulaire de Photoexcitation (DCPX), qui est décrit par un courant électronique directionnel et chirosensible, lorsque plusieurs niveaux sont peuplés de manière cohérente avec de la lumière chirale. Enfin, nous avons introduit une perspective temporelle à la photoionisation chirale en mesurant l'asymétrie avant arrièredes retards de photoionisation dans les molécules chirales photoionisées par des impulsions lumineuses chirales. / This thesis manuscript is articulated around the investigation of the interaction between ultrashort light pulses and gas-phase atoms, polyatomic and chiral molecules. Using the toolboxes developed in attosecond and strong-field physics as well as in femtochemistry, our general goal is to reach a better understanding of subtle effects underlying ultrafast light-induced dynamics in matter.To do so, we developed cutting-edge near-infrared and mid-infrared few-cycle light sources, which were used to build a water-window soft-X-ray source based on high order harmonic generation (HHG), as well as to study new HHG channels involving highly-excited (Rydberg) states. The latter study revealed a delayed HHG emission from the ionization of Rydberg states and radiative recombination onto the electronicground state, triggering our interest in the role of Rydberg states in strong-field physics. This led us to investigate the laser-induced XUV Free Induced Decay from electronic wave packets as a new background-free 2D spectroscopic technique.More over, we have found out that strong-field interaction with a well prepared coherent superposition of electronic states led to the generation of hyper-Ramanlines concomitant with standard high-order harmonics. These spectral features were predicted in the early-days theoretical calculations of HHG but had never been reported experimentally.After these experiments in rare gas atoms, we moved to molecular targets, in whichlight-induced electronic excitation can trigger nuclear dynamics. Using simple benchmark molecules, we have studied dynamics involving the participation of both nuclear and electronic degrees of freedom: first, we studied the ultrafast non adiabatic photoisomerization of the acetylene cation into vinylidene cation, andsecond, we investigated the coherent control of electron localization during molecular photodissociation of H2+. The simplicity of these molecular targets enabled the comparison of the experimental results with state-of-the-art theoretical calculations,revealing the importance of the coupling between nuclear and electronic degrees of freedom in photoinduced molecular dynamics.The other major pillar of this thesis is the study of ionization of chiral molecules usingchiral light pulses. It has been known since the 70s that the ionization from an ensemble of randomly oriented chiral molecules, using circularly polarized light pulse,leads to a strong forward-backward asymmetry in the number of emitted photoelectrons, along the light propagation axis (Photoelectron Circular Dichroism,PECD). Prior to this thesis, PECD was widely studied at synchrotron facilities (single photonionization) and had recently been demonstrated using table-top lasers in resonant-enhanced multiphoton ionization schemes. In this thesis, we have shownthat PECD is a universal effect, i.e. that it emerges in all ionization regimes, from single photon ionization, to few-photon ionization, to above-threshold ionization, up to the tunneling ionization regime. This bridges the gap between chiral photoionizationand strong-field physics. Next, we have shown how the combination of standard femtochemistry approaches and PECD can be used to follow the dynamics of photoexcited chiral molecules using time-resolved PECD. Using similar experimental approaches, but by using pulse sequences with counter-intuitive polarization states,we have demonstrated a novel electric dipolar chiroptical effect, called Photoexcitation Circular Dichroism (PXCD), which emerges as a directional and chirosensitive electron current when multiple excited bound states of chiral molecules are coherently populated with chiral light. Last, we introduced a time-domain perspective on chiral photoionization by measuring the forward-backward asymmetry of photoionization delays in chiral molecules photoionized by chiral light pulses. Our work thus carried chiral-sensitive studies down to the femtosecond and attosecond ranges.

Les leishmanioses sont des parasitoses en constante évolution, et l’accroissement d’apparitions de résistances vis-à-vis des traitements disponibles en fait une des préoccupations majeures des organismes de santé publique dans le monde. La miltefosine est actuellement le seul antileishmanien actif par voie orale. Son mécanisme d’action implique les lipides et notamment les phospholipides membranaires du parasite.Afin d’évaluer les effets de la miltefosine sur le parasite ainsi que les mécanismes de résistances, une étude lipidomique d’un clone de Leishmania donovani cultivé sous différentes conditions (traité, résistant, résistant-traité) a été réalisée dans le présent travail. Des analyses couplant une séparation des phospholipides en Chromatographie Liquide Haute-Performance à polarité de Phase Normale (NP-HPLC) avec un Spectromètre de Masse (MS) équippé d’une source d’Ionisation ElectroSpray (ESI) ont été traitées par chimiométrie, à l’aide d’une Correction Orthogonale du Signal suivie d’une Analyse Discriminante par Moindre Carrés Partiels (OSC-PLS-DA). Les principales espèces moléculaires permettant de distinguer les différentes cultures ont ensuite fait l’objet d’une identification structurale par spectrométrie de masse en tandem. Des hypothèses métaboliques ont pu être posées.Puis l’étude a été étendue à une plus grande variété de lipides, séparés par NP-HPLC. Pour cela une comparaison des sources d’ionisation à pression atmosphérique (ESI, Ionisation Chimique à Pression Atmosphérique et PhotoIonisation à Pression Atmosphérique) a été nécessaire afin de sélectionner la mieux adaptée pour un tel couplage. Les mécanismes d’action de la miltefosine et de l’amphotéricine B ont alors fait l’objet d’une étude lipidomique. / Leishmaniasis is a more and more spreading disease, and resistance of parasites toward antileishmanial drugs is a concern for public safety organizations troughout the world. Miltefosine is the only oral drug, and its mechanism of action implies membrane lipids, and phospholipids, of parasite cells.In order to assess this mechanism of action, and resistance mechanisms developed, a lipidomic study of Leishmania donovani strains (treated, resistant, treated-resistant) was performed in the present work. A Normal-Phase High-Performance Liquid Chromatography (NP-HPLC) was coupled to an ElectroSpray Ionisation Mass Spectrometer (ESI-MS) to analyze phospholipids, and data were computed using an Orthogonal Signal Correction-Partial Least Squares-Discriminant Analysis (OSC-PLS-DA). Molecular species responsible for the differenciation of strains were then structuraly identified using tandem mass spectrometry. Hypotheses on metabolic pathways implied were then proposed.The study was then extended to a broader range of lipids, also analyzed through NP-HPLC-MS. A comparison of Atmospheric Pressure Ion sources (ESI, Atmospheric Pressure Chemical Ionization and Atmospheric Pressure PhotoIonization) was thus necessary in order to select the most suitable source. A lipidomic study was then performed to assess mechanisms of action and mechanisms of resistance concerning miltefosine and Amphotericin B.

L'avènement de la physique attoseconde a amené de nouveaux challenges tant expérimentaux que théoriques. En effet, l'observation de processus dynamiques, intervenant aux échelles de temps intrinsèques des mouvements des charges aux échelles atomiques, permet d'envisager des nouveaux processus pour lesquels le rôle des corrélations et des couplages non-adiabatiques deviennent primordiaux. Les travaux présentés dans ce manuscrit s'inscrivent dans le cadre de l'étude des molécules complexes, en particulier carbonées, soumises à une impulsion lumineuse courte. Pour de telles échelles de temps (femtoseconde / attoseconde) et d'énergie (IR / UVX), les principales approximations permettant l'étude des systèmes électroniques ne sont plus valides. Cette thèse présente les simulations théoriques réalisées permettant l'étude théorique de molécules dans de telles conditions. L'étude des dynamiques de migration de charges corrélées au sein des molécules de benzène, de différents hydrocarbures aromatiques polycycliques ainsi qu'au sein de molécules d'intérêt biologique telles que la phénylalanine, a été réalisée. Ce type de dynamiques n'a jamais pu être observé expérimentalement. Une attention particulière a donc été portée à la faisabilité d'une expérience dans le cas de la molécule de benzène. Les relaxations non-adiabatiques de la molécule de naphtalène soumise à une impulsion UVX ont été étudiées. Enfin, les dynamiques à l'échelle du cycle optique, rencontrées par un groupe de molécules de taille intermédiaire soumis à une impulsion IR, ont été abordées. Ces simulations ont permis d'interpréter des expériences pompe-sonde réalisées par des membres de notre équipe / The advent of attosecond physics has brought new experimental and theoretical challenges. Indeed, the observation of dynamic processes occurring at the intrinsic time scale of charge motion at atomic scale, allows to consider new processes for which the role of correlations and non-adiabatic couplings become primordial. The work presented in this manuscript falls in the context of the study of complex molecules subject to a short light pulse. For such time (femtosecond / attosecond) and energy scales (IR / XUV), the main approximations that permit the study of electronic systems are no longer appropriate. In this thesis, we present the simulations realized for the theoretical study of molecules in such conditions. We studied the correlated charge migration dynamics in several molecules like the benzene, different polycyclic aromatic hydrocarbons and molecules of biological interest such as phenylalanine. This kind of dynamics has never been observed experimentally. Hence, a particular attention was paid to the feasibility of an experiment in the case of the benzene molecule. The non-adiabatic relaxations of the naphthalene molecule subjected to a XUV pulse were also studied. Finally, dynamics occurring at the optical cycle time scale experienced by a group of medium-sized molecules subject to an IR pulse, were discussed. These simulations were used to interpret pump-probe experiments made by members of our team

Processes at the air-water/ice interface are known to play a very important role in the release of reactive halogen species with atmospheric aerosols serving as catalysts. The ability to make different types of ice with various morphologies, hence, different adsorption and surface properties in vacuum, provide a useful way to probe the catalytic effect of ice in atmospheric reactions. Also, the use of the liquid jet technique provides the rare opportunity to probe liquid samples at the interface; hitherto impossible to investigate with traditional surface science techniques. Studies of reactions on both ice and liquid surfaces at ambient conditions are usually complicated by the rapid desorption and adsorption processes due to the high evaporation rates at the surface. To gain a better understanding and improve modeling of several atmospheric relevant reactions, it is therefore important to develop laboratory techniques that provide an opportunity to investigate non-thermal reactions on both ice and liquid surfaces. Detailed investigation of the interactions of atmospheric relevant molecules (methyl iodide and hydrogen chloride) on water ice at low temperature in UHV conditions has been carried out. These interactions were studied using different techniques such as temperature programmed desorption (TPD), electron stimulated desorption (ESD) and resonance enhanced multiphoton ionization (REMPI). Unlike probing reactions on ice surfaces, investigating air/liquid interfaces present several challenges. This is because traditional surface science techniques require an ultra high vacuum environment to prevent distortion of information due to interference from equilibrium vapor above the liquid surface during data acquisition. The liquid jet technique facilitates the direct study of continually renewed liquid surfaces in high vacuum, thereby preventing the constant changing of the properties and composition of the liquid surface due to the aging process (diffusion of impurities or liquid constituent). A linear time-of-flight mass spectrometer has been used to monitor ion ejection during laser irradiation of liquid jet containing aqueous solutions and pure water. Since these ions are ejected exclusively from the surface of the liquid and the cluster distributions observed are influenced by the local structure, these experiments provide a sensitive probe of the liquid vacuum interface of these solutions. Though the research is fundamental, the results obtained from these investigations indicate how the discontinuity of bulk properties on the surface of both ice and aqueous solutions affects interfacial reactions.

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In this thesis work, the K-shell photoionization of multi-charged ions has been studied as well as the valence photoionization of atomic and small molecular ions. The K-shell photoionization cross sections were measured for nitrogen iso-nuclear series, from N+ to N4+ ions using the ion-photon merged beam technique and the valence photoionization cross sections for Xe+ and Kr+ ions and the small molecular ions CO_2^+ and N_2^+ using both the merged beam and ion trap techniques at the SOLEIL synchrotron radiation facility in Saint-Aubin, France. Combination of the two techniques allows for the measurement of the pure ground state ionization cross section on an absolute scale.The experimental K-shell photoionization cross sections are compared with theoretical results obtained from the multi-configuration Dirac-Fock (MCDF), R-matrix and the Screening Constant by Unit Nuclear Charge (SCUNC) methods. The interplay between experiment and theory enables the identification and characterization of the strong 1s→2p and 1s→3p resonances observed in the spectra. The experimental valence photoionization cross sections for Xe+ and Kr+ ions are compared with MCDF calculations results obtained for the direct photoionization process. The quality of the absolute cross section measurements using the merged beam techniques is strongly dependent on the performance of Electron Cyclotron Resonance Ion Source (ECRIS). In order to improve the current of ions in the interaction region, the ions extraction system and transport was simulated by using IGUN program and ECRopt.

Orientador: Luiz Guimarães Ferreira / Dissertação (mestrado) - Universidade Estadual de Campinas, Instituto de Fisica Gleb Wataghin / Made available in DSpace on 2018-08-10T00:36:47Z (GMT). No. of bitstreams: 1 Pinho_MariaGloriadeOliveira_M.pdf: 832379 bytes, checksum: 05244cdafb054c3e2fffdc0bd34cdc3a (MD5) Previous issue date: 2007 / Resumo: Apresentamos neste trabalho o estudo da fotoionização, incluindo os efeitos relativísticos, de elétrons das camadas-s mais externas dos átomos de Sódio, Potássio, Rubídio e Césio. Tratamos do processo onde um átomo não polarizado é fotoionizado por luz incidente linearmente polarizada, utilizando o Estado de Transição de meia ocupação, sob a ótica da aproximação de dipolo elétrico e da Aproximação da Densidade Local (LDA). Em nosso procedimento fazemos uso das equações de Dirac para o cálculo das funções de onda relativísticas, utilizadas para a obtenção das seções de choque totais de fotoionização e dos parâmetros de assimetria. Mostramos as vantagens da utilização do Estado de Transção de meia ocupação e sua precisão numérica nos cálculos de grandezas físicas como o Potencial de Ionização dos átomos. Através dos resultados obtidos, observamos a influência que os mínimos das seções de choque, chamados Mínimos de Cooper, exercem sobre os parâmetros de assimetria. Estes dados sâo comparados com cálculos efetuados através de outras formulações por outros autores e também com resultados experimentais encontrados na literatura / Abstract: In this work we present photoionization results for the valence s-electrons of Sodium, Potassium, Rubidium and Cesium atoms including relativistic effects. In our calculations we consider the photoionization of a non-polarized atom by linearly polarized light, using half occupation transition states, within the electric dipole approximation and the Local Density Approximation. Our total photoionization cross sections and asymmetry parameters were calculated using relativistic wave functions obtained from Dirac¿s equations. We show that the use of half occupation transition states improves the results, producing many advantages, such as numeric precision in the evaluation of the Ionization Potentials. We have also studied the in uence of the cross section minimum (Cooper Minimum) on the asymmetry parameters. We compare our results with experimental data and with other calculations from the literature / Mestrado / Física Atômica e Molecular / Mestre em Física

La corrélation électronique dans une molécule est une des difficultés principales du problème à N corps. Un moyen d'exalter des effets multiélectroniques est l'utilisation de rayonnements de l'extrême ultra-violet (UVX) pour photo-ioniser des électrons de valences internes de systèmes poly-atomiques complexes. Les états cationiques ainsi créés résultent d'excitations d'ordre supérieur (de type « 2-hole 1-particle ») et leur dynamiques subséquentes mènent à des considérations en dehors du cadre de l'approximation de Born-Oppenheimer. Les développements récents en matière de sources d'impulsions UVX ultracourtes, notamment produites par génération d'harmoniques d'ordres élevés (HHG), permettent d'étudier ces mécanismes sur des échelles de temps de temps allant de quelques centaines de femtoseconde (1 fs = 10-15 s) jusqu'à l'attoseconde (1 as = 10-18 s).Lors de cette thèse, j'ai premièrement étudié la réponse statique de molécules carbonées ou biologiques à une excitation femtoseconde infrarouge (IR) multi-photonique à l'aide d'un spectromètre imageant les vecteurs vitesses des photoélectrons (VMIS). Ensuite, à travers une approche multi-échelle, j'ai exploré, dans ces systèmes complexes, les dynamiques induites par impulsions femtosecondes et attosecondes UVX. En particulier, j'ai étudié, dans les Hydrocarbures Aromatiques Polycycliques (HAPs), l'évolution des états cationiques hautement excités ainsi que l'effet du potentiel moléculaire lors du processus de photo-ionisation, grâce à un schéma de spectroscopie UVX-pompe IR-sonde couplé à un VMIS. Enfin, j'ai examiné le rôle de la dynamique ultrarapide des charges induites par une photo-ionisation UVX en rapport avec la fragmentation de la biomolécule de caféine.Les processus observés s'intègrent à une approche multi-échelle de la physique moléculaire ultra-rapide et permettent de mieux saisir l'implication des effets multiélectroniques et des couplages non-adiabatiques dans les systèmes polyatomiques complexes / Electron correlation in a molecule is one of the main difficulties of the N-bodies problem. One mean to enhance multielectronic effects is to use extreme ultraviolet light (XUV) in order to ionize inner-valence electrons of complex polyatomic systems. Thus, the produced cationic states result from a higher order photo-excitation processes (such as “2-hole, 1particle”) and their dynamics lead to considerations out of the frame of the Born-Oppenheimer approximation. Recent developments in ultrafast science concerning the XUV ultrashort pulses sources, produced by high harmonic generation (HHG), allow studying these mechanisms from the hundreds of femtoseconds (1 fs = 10-15 s) timescale up to the attosecond (1 as = 10-18 s) timescale.During this thesis I have firstly studied the static response of carboneous and biological molecules to a multi-photonic infrared (IR) femtosecond excitation thanks to a velocity map imaging spectrometer (VMIS). Then, through a multi-scale approach, I have investigated, in these complex systems, the dynamics induced by XUV femtosecond and attosecond pulses. I have especially studied, in Polycyclic Aromatic Hydrocarbons (PAHs), the evolution of highly excited cationic states and the effect of the molecular potential during the photoionization process, thanks to a XUV-pump IR-probe spectroscopy scheme coupled to a VMIS. Finally, I have examined the role of the ultrafast charge dynamics induced by XUV photo-ionization on fragmentation mechanisms in the caffeine biomolecule. The observed processes are entire part of a multi-scale approach of the ultrafast molecular physics and allow a better understanding of the implication of multielectronic effects and non-adiabatic couplings in complex polyatomic systems