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Studies of immune responses to cell surface proteins of Helicobacter pylori and Borrelia burgdorferi by enzyme imunoassay and immunoblottingNilsson, Ingrid. January 1998 (has links)
Thesis (doctoral)--Lund University, 1998. / Added t.p. with thesis statement inserted. Includes bibliographical references.
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Développement d'une méthode de détection multiplexe de bactéries pathogènes en matrice alimentaire se basant sur l'imagerie par résonance des plasmons de surface (SPRi) / Development of a multiplex method based on surface plasmon resonance imaging (SPRi) for pathogenic bacteria detection in food samplesMorlay, Alexandra 15 December 2016 (has links)
La présence de micro-organismes pathogènes dans les produits alimentaires représente un risque important de santé publique. La réglementation régit leur contrôle en imposant, dans la majorité des cas, la recherche d’une faible quantité de ces bactéries. Les méthodes de détection de référence sont simples à mettre en œuvre mais chronophages et nécessitent un temps d’analyse de plusieurs jours. Aussi, un des enjeux majeurs dans le domaine du contrôle alimentaire, est la mise au point de méthodes sensibles et rapides pour la détection d’un ou plusieurs pathogènes dans des matrices alimentaires. Ces nouvelles technologies ont pour but de réduire le nombre de toxi-infections alimentaires tout en augmentant la durée de commercialisation des produits et en limitant les impacts économiques négatifs pour les industries (longues périodes de stockage, rappels de lot, etc.).Dans ce contexte, nous nous sommes intéressés à la mise au point d’une méthode alternative aux méthodes de références, basée sur un biocapteur présentant une transduction de type résonance des plasmons de surface (SPR). Cette technologie présente de multiples avantages : simplicité de mise en œuvre, analyse en temps réel, absence de marquage, etc. Des preuves de concept de son utilisation, pour la détection de bactéries pathogènes ont été présentées dans la littérature, utilisant principalement des récepteurs de type anticorps.Au cours des travaux présentés dans cette thèse nous nous sommes intéressés à la détection de bactéries pathogènes alimentaires majeures en termes de prévalence ou de gravité de l’infection, qu’elles soient Gram positif ou Gram négatif. La production d’anticorps performants a également été optimisée pour obtenir des anticorps polyclonaux sensibles et spécifiques de plusieurs genres bactériens. Les cinétiques de croissance bactérienne ont été analysées par SPR afin d’identifier les principaux phénomènes impactant la détection. Des techniques en haute résolution ont permis une meilleure compréhension des événements se produisant à la surface du biocapteur. Ces études ont menés à l’obtention d’un système permettant la détection multiplexe d’un faible inoculum de bactéries pathogènes dans des matrices alimentaires (salade et poudre de lait infantile) en moins de 24h. / The presence of pathogenic micro-organisms in foodstuff is a major concern for health safety. Regulations impose, in most cases, the research of low levels of these bacteria. Although reference methods are simple, they are time-consuming and can require several days before obtaining results. This is why one of the major challenges in food hygiene science is the development of sensitive and rapid methods, for the detection of one or more pathogens. These new technologies aim to decrease the occurrence of foodborne infections, while improving both the shelf life of food products and industrial production costs (long storage times, recalls …).In this context, the development of an alternative method has been carried out in this work, using a biosensor with a transduction based on surface plasmon resonance (SPR). Such optical technology offers multiple benefits: ease-of-use, real-time analysis, label-free process… Proofs of concept for the use of this technology in basic conditions, for the detection of model bacteria, have been described in the literature, mostly using antibodies as receptors, but the full operation in "real" conditions encountered in industrial facilities still has to be tested and optimizedThis manuscript thus describes the detection of foodborne pathogenic bacteria playing a major role in terms of prevalence and/or severity of the caused infection, whether Gram positive or negative. The production of efficient antibodies was optimized, resulting in polyclonal antibodies sensitive and specific for multiple bacterial genera. Dynamics of bacterial growths were analysed by SPR in an effort to identify the main factors having an impact on the detection. High resolution SPR was used for a better understanding of reactions occurring at the surface of the biosensor. These studies lead to the development of a system capable of multiplex detection of low bacterial inoculum in food samples (lettuce and powdered infant formula) within less than 24 hours.
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Caracterização fenotípica e funcional de mutantes da bactéria fitopatogênica Xanthomonas citri subsp. citriFerreira, Cristiano Barbalho [UNESP] 06 November 2009 (has links) (PDF)
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ferreira_cb_me_jabo.pdf: 3799793 bytes, checksum: f1b3670130a5947eeee6d1e3151f9b69 (MD5) / Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES) / Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP) / Fundecitrus / Dentro da comercialização de frutas, a citricultura é a mais importante. Representa para muitos países, dentre eles, os EUA e o Brasil, uma importante atividade econômica. Porém, esta atividade, vem sofrendo com inúmeras doenças e/ou pragas como a doença do Cancro Cítrico Asiático causada pela bactéria Xanthomonas citri subsp. citri (X. citri). Deste modo, com o objetivo do estudo do genoma funcional da X. citri, um banco de mutantes deste microorganismo foi obtido por meio de inserção aleatória do transposon Tn5, nas quais foram selecionados 53 mutantes que apresentaram, de forma superficial, alterações fenotípica em relação à X. citri selvagem. Para uma avaliação mais precisa, eles passaram por uma nova confirmação de suas alterações fenotípicas, onde foram inoculados em folhas de Citrus sinensis (Laranjeira pêra-Rio) e Citrus limonia (limoeiro cravo) e monitorados durante 16 dias, e aqueles que apresentaram as maiores alterações em relação à selvagem, tiveram confeccionadas para si curvas de crescimento in vivo. Conseguiu-se, desta forma, avaliar quantitativamente o processo patogênico, relacionar seus sintomas com dados numéricos e ainda descobrir detalhes até então não conhecidos. O mapeamento, dos respectivos loci mutados, foi realizado por seqüenciamento de DNA a partir do transposon, demonstrando que a metodologia empregada para a obtenção dos mutantes foi eficiente, conseguiu também revelar diversas proteína ainda hipotéticas, e outras, até então, não considerados como implicados no processo patogênico, como, uma Integrase, Fe-S oxidoredutase, Helicase IV, Receptor Dependente de Ton-B, entre outros / Concerning the commercialization of fruits, the citrus production is the most important. It represents for many countries, amongst them, U.S.A. and Brazil, an important economic activity. However, this activity has been suffering with many illnesses and/or plagues as the illness from the Asiatic citrus canker caused by the Xanthomonas citri subsp. citri bacterium (X. citri). In this way, from a bank of mutants of X. citri, gotten by means of random insertion of commercial one derived from transposon Tn5, had been selected 53 mutants that had presented, of superficial form, some type of phenotype alteration in relation to the wild X. citri. To a more necessary evaluation, each one of them passed for a new confirmation of its phenotype alterations, where they had been inoculated in leafs of Citrus sinensis ('Pera' sweet orange) and Citrus limonia ('Rangpur' lime) and monitored during 16 days, and those that had presented the biggest alterations in relation to the savage, had confectioned for itself in planta growth curves. We obtain, in such a way, to evaluate quantitatively the pathogenic process, to relate its symptoms with numerical data and still to discover not known details until then. The mapping of respective locus mutated was carried through by sequencing of DNA from transposon, demonstrating that the methodology used for the attainment of the mutants was efficient and still to disclose diverse genes still hypothetical, and others, until then, not considered as implied in the pathogenic process, as, Integrase, Fe-S oxidoredutase, Helicase IV, TonB-dependent receptor, among others
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Interações entre calos de cana-de-açucar e bactérias diazotróficas endofíticas isoladas de cana-de-açúcar. / Interactions between sugarcane callus and endophytic bacteria diazothrophic isolated from sugarcane.Adriana Macedo de Carvalho 06 May 2013 (has links)
A cana-de-açúcar tem elevada importância econômica e agrícola. Bactérias diazotróficas possuem importante papel nos níveis de nitrogênio combinado no solo. Tornando estas bactérias as maiores fontes naturais de nitrogênio reduzido. Os gêneros bacterianos escolhidos são endofíticos, diazotróficos, isolados de cana-de-açúcar. Utilizou-se células de cana-de-açúcar na forma de calo como um modelo da interação bactéria-planta. Os experimentos com misturas bacterianas, avaliaram se dois gêneros seriam capazes de interagir, e nas contribuições às células vegetais. Pseudomonas sp. e Pantoea sp., sofreram inibição do crescimento e Enterobacter sp. foi estimulado. Pseudomonas sp. mostrou ser uma fraca competidora. Quando associadas, a morte de Pseudomonas sp. foi estimulada por Pantoea sp.. Os efeitos do calo na nitrogenase foram observados pontualmente e os no crescimento por períodos maiores. Conteúdos de EROs auxiliaram nos resultados de patogenicidade das linhagens. / The sugarcane has a high economic and agricultural importance. Diazotrophs play an important role in combined nitrogen levels in the soil. Making these bacteria the highest natural sources of reduced nitrogen. The bacterial genera chosen were endophytic diazotroph isolated from sugarcane. Was used cell sugarcane in the form callus as a template of the bacteria-plant interaction. The experiments with bacterial mixtures, evaluated whether two genres would be able to interact, and contributions to plant cells. Pseudomonas sp. and Pantoea sp. suffered growth inhibition and Enterobacter sp. was stimulated. Pseudomonas sp. proved to be a weak competitor. When attached, the death of Pseudomonas sp. was stimulated by Pantoea sp .. The effects of nitrogenase were observed in callus punctually and growth for longer periods. Contents of ROS helped for the pathogenicity of strains.
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Bactérias indicadoras e patogênicas em biofilmes de sistemas de tratamento de água, sistemas contaminados e esgoto. / Pathogenic and indicator bacteria in drinking water treatment plants, in sewage treatment plants and in a creek contaminated with raw sewage.Bianca de Miranda Peres 27 March 2012 (has links)
Amostras de biofilme de biomassa suspensa de tanque de aeração de lodo ativado, de córrego contaminado com esgoto e de vários pontos de planta de tratamento de água foram analisadas com relação à presença de bactérias indicadoras e patogênicas. Nos testes presuntivos foram detectados todos os microrganismos-alvo (Coliformes, Salmonella spp, Klebsiella spp., Staphylococcus spp., Pseudomonas spp., Enterococcus spp., Vibrio spp., Clostridium spp., Shigella spp., Aeromonas spp., Campylobacter spp. e Legionella spp.), porém nos testes confirmatórios por PCR e teste bioquímico somente as espécies E. coli, Salmonella enterica subsp. Enterica serovar Typhi, K. pneumoniae, V. cholerae, A. hydrophila, e L. pneumophila foram confirmadas para algumas cepas selecionadas dos testes presuntivos. S. flexneri foi somente confirmada por teste bioquímico e S. aureus somente por PCR. Nenhuma amostra de C. jejuni foi confirmada por nenhum dos testes. Estes resultados demonstram que os meios seletivos para testes presumptivos não se mostraram confiáveis uma vez que muitas amostras presuntivas não foram confirmadas por PCR ou teste bioquímico específico. Estes resultados demonstram o potencial de biofilmes como reservatório de patógenos. / Biofilm samples from activated sludge reactors, surfaces from water treatment plants and water samples from a creek contaminated with raw sewage were analyzed for the presence of microbial indicator bacteria and pathogens. All target organisms (Coliforms, Salmonella spp, Klebsiella spp., Staphylococcus spp., Pseudomonas spp., Enterococcus spp., Vibrio spp., Clostridium spp., Shigella spp., Aeromonas spp., Campylobacter spp. and Legionella spp.) were detected by using presumptive testing media. Only a small proportion of positive colonies from presumptive tests were confirmed as pathogenic strains of E. coli, Salmonella enterica subsp. Enterica serovar Typhi, K. pneumoniae, V. cholerae, A. hydrophila, and L. pneumophila in confirmatory testing by selective PCR and biochemical tests. S. flexneri was only confirmed in biochemical tests, S. aureus only by PCR and no colony of C. jejuni was confirmed positive by either PCR or biochemical testing. Presumptive media are therefore not safe means for assessing pathogen load in biofilm samples. These results demonstrate the importance of microbial biofilms as reservoirs for microbial pathogens.
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Survival of Spore forming bacteria during pasteurisation and anaerobic digestion in biogas plants.Danielsson, Mari January 2006 (has links)
ABSTRACT Anaerobic digestion is one way of handling biowaste and generating energy in the form of methane, biogas. This study shows that spore forming bacterias survive the process of pasteurisation and anaerobic digestion in biogas plants. It has also been established that both the nonpasteurised-and digestion- waste contains pathogen spore forming bacterias. Two Swedish full-scale commercial biogas plants were sampled before pasteurisation, after pasteurisation and after digestion on 10 occasions with one week intervals. The samples were analysed quantitatively and qualitatively, with biochemical methods, for Clostridium spp and Bacillus spp. Polymerase Chain Reaction, a biomolecular method, was used for C. chauvei analysis, with C. chauvei specific primers. For this analyse the biogas plants were sampled at 11 occasions. Survival of pathogenic spore forming bacteria in digestion residue may be a health risk for both humans and animals. The digested residue may be used as fertiliser on arable land and the risk of contamination by pathogenic Clostridium spp and Bacillus spp is hard to assess, but can not be neglected.
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Biogenesis and membrane anchoring of the Type VI secretion contractile tailZoued, Abdelrahim 07 December 2015 (has links)
Récemment, le système de sécrétion de type VI (SST6) a été identifié comme un nouvel acteur clé dans la compétition inter-bactérienne parmi le large arsenal dont dispose les bactéries. L’une des particularités du SST6 est de cibler à la fois des cellules eucaryotes et procaryotes. Le T6SS est un complexe protéique formé par l’assemblage de deux ‘sous-complexes’. Le premier sert à l’ancrage de la machinerie au sein de l’enveloppe bactérienne et le second agit comme une arbalète moléculaire. Le mécanisme d’action du SST6 est très similaire à celui d’autres machineries contractiles telles que celui des bactériophages : la contraction d’un fourreau propulse une flèche, composée d’un tube avec une aiguille à son extrémité, directement dans la cellule cible afin de délivrer les différentes toxines. Mon projet de thèse consiste à comprendre quelles sont la structure et la biogénèse des deux différents complexes et de comprendre comment ils sont assemblés. Nous utilisons comme modèle la bactérie pathogène à Gram négatif Escherichia coli entéroagrégative. J’ai pu démontrer que le complexe membranaire est assemblé en premier, avec l’adressage de la lipoprotéine de membrane externe TssJ, puis le recrutement séquentiel de TssM et TssL, deux protéines de membrane interne. Le complexe membranaire recrute ensuite une plateforme d’assemblage, appelée ‘baseplate’. Nous avons identifié et caractérisé les composants de cette ‘baseplate’ qui sert de plateforme d’assemblage pour le recrutement du reste de la machinerie (fourreau et flèche). Enfin, nous avons identifié et déterminé le rôle de la protéine TssA, une protéine qui coordonne la polymérisation du fourreau et de la flèche. / Among the broad weaponry of bacteria, the recently identified type VI secretion system (T6SS) emerges as one of the key player in bacterial competition. T6SS is a versatile machinery that targets both eukaryotic and prokaryotic cells. This molecular weapon assembles two evolutionarily different sub-assemblies. One complex anchors the machinery to the cell envelope while the second acts as a molecular crossbow. The mechanism of action of the T6SS is similar to other known contractile machineries such as bacteriophages: the contraction of a sheath propels an arrow, constituted of a tail tube capped by a cell-puncturing device, directly into the prey cell to deliver effector toxins. My Ph.D project was to provide mechanistic details on the structure and biogenesis of the two T6SS sub-complexes and to understand how they are connected, using entero-aggregative Escherichia coli as model bacterium. I have demonstrated that the membrane complex is assembled first and starts with the positioning of the outer membrane TssJ lipoprotein and proceeds inward, from the outer to the inner membrane, through the sequential recruitment of the TssM and TssL subunits. After assembly, the membrane complex recruits an assembly platform called the baseplate. We identified and characterized the components of this baseplate, which serves as assembly platform for the tail. We further demonstrated that the functional and physical interaction between the T6SS membrane complex and the baseplate is mediated by multiple contacts. Finally, we identified and deciphered the role of TssA, a protein that coordinates the polymerizations of the tail tube and sheath.
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Staphylococcus aureus e Listeria monocytogenes isolados de laticínios: ocorrência, avaliação da capacidade de formação de biofilmes e inativação por ácido peracético e plasma a frio / Staphylococcus aureus and Listeria monocytogenes isolated from dairy plants: occurrence, evaluation of biofilm formation ability and inactivation by peracetic acid and cold plasmaSarah Hwa In Lee 28 July 2015 (has links)
No presente estudo, um conjunto de três experimentos foram conduzidos com o objetivo de avaliar a ocorrência de Staphylococcus aureus e Listeria monocytogenes em três lacticínios (A, B e C) localizados na região sudeste do Brasil de dezembro 2013 a abril de 2015 (Experimento 1), a eficiência do tratamento com ácido peracético (APA) e jato de plasma a frio (PF) para inativar os isolados em diferentes tempos (Experimento 2) e a capacidade dos isolados produzir biofilmes na superfície de poliestireno e de aço inoxidável, juntamente com inativação e remoção de células aderidas pelo APA (Experimento 3). No Experimento 1, foram analisadas amostras de leite e queijo, superfícies com e sem contato com alimentos. L. monocytogenes foi isolada em apenas uma amostra (0,3%, N = 349) de ralo no laticínio B, enquanto seis (1,7%, n = 349) S. aureus foram isolados de luvas de manipuladores em laticínio A, salmoura no laticínio B e superfície do queijo, utensílio, bota e mão esquerda de trabalhador no lacticínio C. Apesar das incidências desses dois agentes patogênicos de origem alimentar nos lacticínios avaliados foram baixo, sua presença também indica a necessidade de controle estratégias para impedir a sua persistência e contaminação cruzada. No Experimento 2, tratamento com APA (0,5%) e jato de PF foram aplicados diretamente sobre suspensões de isolados de S. aureus e L. monocytogenes. A inativação bacteriana (aproximadamente de 7 ciclos log) foi alcançada em 120 seg. com o tratamento com APA para todos os isolados, enquanto que o tratamento com plasma a frio reduziu aproximadamente 2 ciclos log nas superficies. Outros estudos usando tratamentos de plasma a frio mais longos são necessários para a total descrição da cinética desta tecnologia para a inativação de importantes patógenos de origem alimentar. No Experimento 3, o tratamento com APA (0,5%) em diferentes tempos (0-controle, 15, 30, 60 e 120 seg.) foi avaliada para a remoção de células aderidas de quatro isolados de S. aureus e um isolado de L. monocytogenes em microplacas de poliestireno, assim como para a inativação de biofilmes dos isolados em aço inoxidável. O tratamento com APA removeu (p<0,05) células aderidas de todos os isoladoas estudados S. aureus da superfície, sem diferenças (p> 0,05) no indice de formação de biofilmes nos tempos de tratamento. No entanto, nenhum efeito (p> 0,05) foi observado em células aderidas de L. monocytogenes. A microscopia de epifluorescência mostrou que todas as bactérias testadas foram parcialmente e completamente inativadas após 15 seg e 30 seg. respectivamente. Os resultados indicam um potencial para a utilização de APA contra biofilmes formados por S. aureus e L. monocytogenes, e da necessidade de novos estudos com a PF para determinar os parâmetros ideais para a inativação dos patógenos de origem alimentar. / In the present study, a set of three experiments were conducted aiming to evaluate the occurrence of Staphylococcus aureus and Listeria monocytogenes in three dairy plants (A, B and C) from Southeast region of Brazil from December 2013 to April 2015 (Experiment 1), the efficiency of peracetic acid (PAA) and cold plasma (CP) jet treatment to inactivate the isolates at different times (Experiment 2) and the ability of the isolates to produce biofilms on polystyrene and stainless steel surface, along with inactivation and removal of biofilms by PAA (Experiment 3). In Experiment1, samples of milk and cheese, food contact surfaces and non-food contact were analyzed. L. monocytogenes was isolated in only one sample (0.3%, N=349) of drain sponge swab in dairy plant B, while 6 (1.7%, N=349) S. aureus strains were isolated from handlers\' glove in dairy plant A, brine in dairy plant B and cheese surface, cheese utensil, worker\'s boot and worker\'s left hand in dairy plant C. Although the incidences of those two food-borne pathogens in the dairy plants evaluated were low, their presence also indicates the need for control strategies to prevent their persistence and cross-contamination. In Experiment 2, PAA (0.5%) and CP jet treatment were applied directly on suspensions of S. aureus and L. monocytogenes strains. Reduction of bacterial load (nearly 7 log cycles) was achieved with 15 sec. of PAA treatment of all strains, whereas CP treatment reduced approximately 2 log cycles after 2 min. Hence, plasma treatment has a potential for reducing the bacterial load on surfaces, although further studies using longer CP treatment times are necessary to fully describe the kinetics of this technology for inactivation of important food pathogens. In Experiment 3, PAA (0.5%) treatment at different times (0-control, 15, 30, 60 and 120 sec.) was evaluated for removing of adherent cells of 4 strains of S. aureus and one strain of L. monocytogenes on polystyrene plates, as well as for inactivation of biofilms of those strains on stainless steel. PAA treatment removed (p<0.05) all the S. aureus cells from the surface, with no difference (p>0.05) in the reduction of the biofilm-forming index at the treatment times. However, no effect (p>0.05) was observed on L. monocytogenes adhered cells. Epifluorescence microscopy showed that all bacterial strains tested were partially and completely inactivated after 15 sec. and 30 sec., respectively. Results indicate a potential use of PAA against biofilms formed by S. aureus and L. monocytogenes, and the need of further studies with CP to determinate the ideal parameters for inactivation of food-borne pathogens.
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Molecular characterisation of Flavobacterium spp. and investigation of their biofilm-forming capacity in the tilapia aquaculture systemFlemming, Leonard (Leonard Arnold) 04 1900 (has links)
Thesis (MSc)--University of Stellenbosch, 2006. / ENGLISH ABSTRACT: Fish infections caused by pathogenic Flavobacterium spp. are a major
problem in the aquaculture industry worldwide, often leading to large
economic losses. Thirty-two Flavobacterium spp. isolates, obtained from
various diseased fish species and biofilm growth, were characterised
genetically using 16S rRNA gene sequencing, 16S rRNA gene PCR
restriction fragment length polymorphism (RFLP), randomly amplified
polymorphic DNA (RAPD) PCR, repetitive extragenic palindromic (REP)
element PCR, plasmid profiling, whole cell protein (WCP) and outer
membrane protein (OMP) analyses. The biofilm-forming capability of five
genetically heterogeneous Flavobacterium spp. study isolates was
investigated using a modified microtiter-plate adherence assay, as well as
flow cell studies. Experimental infection studies with Mozambique tilapia
(Oreochromis mossambicus) were carried out in order to determine the
virulence of the Flavobacterium spp. study isolates. 16S rRNA gene
sequence analysis showed the Flavobacterium spp. study isolates were
closely related, and 97% sequence similarity was shared with published F.
johnsoniae sequences. A high degree of genetic heterogeneity was
displayed by the Flavobacterium spp. study isolates following RAPD-PCR,
REP-PCR and OMP analysis, however, based on the results obtained by
plasmid profiling and WCP analysis, the isolates appeared genetically very
homogeneous. The biofilm phenotype was displayed by all five
Flavobacterium spp. isolates tested and varied from weakly to strongly
adherent. No specific correlation was observed between the RAPD, REP
and/or OMP profiles and degree of adherence displayed by Flavobacterium
spp. isolates. However, a specific WCP profile (profile B), exhibited by 48% of
the Flavobacterium spp. isolates, was linked to strong adherence.
Experimental infection studies showed that Flavobacterium spp. isolates
displayed variable levels of virulence, which could not be linked to biofilm
formation, nor specific genotypes. This is the first reported isolation and
characterisation of Flavobacterium spp. isolated from diseased fish in
Southern Africa, and there appears to be significant diversity amongst the
isolates which is not geographically linked nor host related. / AFRIKAANSE OPSOMMING: Visinfeksies veroorsaak deur Flavobacterium spp. is problematies in die
akwakultuur industrie wêreldwyd en lei tot groot ekonomiese verliese. Twee
en dertig Flavobacterium spp. isolate, geïsoleer vanaf verskye geïnfekteerde
visspesies en biofilm groei, was geneties gekarakteriseer met behulp van 16S
rRNS geenvolgorde, 16S rRNS geen PKR restriksie fragment lengte
polimorfisme (RFLP), toevallig geamplifiseerde polimorfiese DNS (TGPD)
PKR, herhaalde ekstrageniese palindromiese (HEP) element PKR, plasmied
profilering, heelsel protein (HSP) en buite membraan protein (BMP) analise.
Die vermoë van vyf geneties heterogene Flavobacterium spp. isolate om
biofilms te vorm was ondersoek met behulp van ‘n gemodifiseerde
mikrotiterplaat vashegtings toets asook vloei-sel studies. Eksperimentele
infeksie studies was uitgevoer op bloukurpers (Oreochromis mossambicus)
om die virulensie van die Flavobacterium spp. studie isolate te toets. 16S
rRNS geenvolgorde analise het getoon dat die Flavobacterium spp. studie
isolate naby verwant was, en het 97% ooreenstemming getoon met
gepubliseerde F. johnsoniae volgordes. TGPD-PKR, HEP-PKR en BMP
analise het ‘n hoë graad van heterogeniteit tussen die Flavobacterium spp.
studie isolate aangetoon, egter, op grond van plasmied profilering en HSP
analise, was die studie isolate geneties baie homogeen. Die biofilm fenotipe
was getoon deur al die getoetsde Flavobacterium spp. isolate en het
gevarieer van swak tot sterk vashegting. Geen spesifieke korrelasie was
waargeneem tussen die TGPD, HEP en/of BMP profiele en graad van
vashegting vertoon deur Flavobacterium spp. isolate nie, maar ‘n spesifieke
HSP profiel (profiel B), getoon deur 48% van die Flavobacterium spp. isolate,
was verbind met sterk vashegting. Eksperimentele infeksie studies het
getoon dat Flavobacterium spp. isolate varierende grade van virulensie
vertoon het en wat met biofilm formasie of spesifieke genotipes geassosieer
kon word nie. Hierdie is die eerste gedokumenteerde isolasie en
karakterisering van Flavobacterium spp. geïsoleer van geïnfekteerde vis in
Suider Afrika, en daar is beduidende diversiteit tussen die isolate wat nie
geografies of gasheer geassosieerd is nie.
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Identificação de raças de Xanthomonas spp. patogênicas a pimentão no estado de São Paulo. / Identification of Races of Xanthomonas spp. pathogenic on pepper in São Paulo State, Brazil.Wierzbicki, Robert 24 January 2005 (has links)
A pústula bacteriana é uma das principais doenças que afetam o pimentão em todo o mundo. Seu agente causal pode ser disseminado por sementes, e é capaz de diminuir a produção e depreciar os frutos para comercialização. A bactéria Xanthomonas spp., o agente causal da doença, apresenta alta variabilidade. Três espécies estão associadas à doença: Xanthomonas axonopodis pv. vesicatoria, X. vesicatoria e X. gardneri. Enquanto alguns isolados infectam somente o pimentão, outros infectam pimentão e tomate. Xanthomonas axonopodis pv. vesicatoria é considerada a espécie mais comum em pimentão, e era anteriormente conhecida como o grupo A de Xanthomonas campestris pv. vesicatoria (A1 não amidolítico, A2 amidolítico); e o grupo B era representado por Xanthomonas vesicatoria (fortemente amidolítico). Até agora, 11 raças do patógeno foram relatadas, sendo as raças 1, 2 e 3 as mais comuns. A resistência genética tem sido a mais importante forma de controle e pode ser obtida pelo emprego de 4 genes dominantes (Bs1, Bs2, Bs3, Bs4). Estes genes estão associados à reação de hipersensibilidade e representam a forma mais promissora de resistência atualmente. Mesmo assim, o gene de resistência a ser utilizado depende da correta identificação das raças no campo. Este trabalho teve como objetivo a identificação de raças de Xanthomonas spp. isoladas em áreas de produção no Estado de São Paulo, visando o desenvolvimento e/ ou recomendação de cultivares resistentes. A identificação de raças do patógeno foi realizada através da observação da reação de hipersensibilidade em linhas quase isogênicas de pimentão Early California Wonder - ECW, ECW-10R, ECW-20R, ECW-30R; e na pimenta PI-235047. Os resultados obtidos entre os 41 isolados avaliados, indicaram a ocorrência das seguintes raças por região: raça 0 (Lins); raça 1 (Bacuriti); raça 2 (Bragança Paulista, Bacuriti, Lins, Ibiúna, Piacatu e Guaíra); raça 3 (Piedade); raça 7 (Mogi das Cruzes) e raça 8 (Piedade, Bragança Paulista, Bacuriti, Lins e Mogi das Cruzes). Pelos resultados, sugere-se o desenvolvimento e a recomendação de cultivares com o gene Bs2 para as regiões estudadas, pois este gene confere resistência às raças 0, 1, 2, 3, 7 e 8 do patógeno. / Bacterial spot is one of the main diseases that affects the pepper worldwide. Its causal agent can be spreaded by seeds, and it is able to decrease the production and to depreciate fruits for commercialization. The bacteria Xanthomonas spp. the causal agent of bacterial spot is highly variable. Three species are associated to the disease: Xanthomonas axonopodis pv. vesicatoria, X. vesicatoria and X. gardneri. Some isolates infect only pepper and other infect pepper and tomato. Xanthomonas axonopodis pv. vesicatoria has been considered the most common species in pepper, and was formerly known as group A of Xanthomonas campestris pv. vesicatoria (A1 non amylolitic, A2 amylolitic) and group B represented by Xanthomonas vesicatoria (strongly amylolitic). Up to now 11 races of the pathogen have been reported and the races 1, 2 and 3 are the most common. The genetic resistance has been the most important control method, through 4 dominant genes (Bs1, Bs2, Bs3, Bs4). These genes are associated to the hipersensitivity reaction and represent the most promising form of resistance nowadays. Even so, the resistance gene to be used depends on the correct identification of the races in the field. This work aimed the identification of the Xanthomonas spp. races in the São Paulo State from production areas, for the development and/ or recommendation of resistant cultivars. The identification of races of the pathogen was accomplished through the observation of the hypersensitivity reaction on near isogenic lines of Early California Wonder pepper - ECW, ECW-10R, ECW-20R, ECW-30R; and in the PI-235047 hot-pepper. Obtained results from 41 isolates, indicated the occurrence of the next races per region: race 0 (Lins); race 1 (Bacuriti); race 2 (Bragança Paulista, Bacuriti, Lins, Ibiúna, Piacatu and Guaíra); race 3 (Piedade); race 7 (Mogi das Cruzes); and race 8 (Piedade, Bragança Paulista, Bacuriti, Lins, Mogi das Cruzes). The results suggest the development and/ or recomendation of cultivars carring the Bs2 gene for studied regions, which confers resistance to 0, 1, 2, 3, 7, and 8 races of the pathogen.
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