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Erwinia chrysanthemi L-asparaginase : epitope mapping and production of antigenically modified enzymesMoola, Zainab Bibi January 1993 (has links)
No description available.
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Application of Synthetic Peptides as Substrates for Reversible PhosphorylationAbukhalaf, Imad Kazem 08 1900 (has links)
Two highly homologous synthetic peptides MLC(3-13) (K-R-A-K-A-K-T-TK-K-R-G) and MLC(5-13) (A-K-A-K-T-T-K-K-R-G) corresponding to the amino terminal amino acid sequence of smooth muscle myosin light chain were utilized as substrates for protein kinase C purified from murine lymphosarcoma tumors to determine the role of the primary amino acid sequence of protein kinase C substrates in defining the lipid (phosphatidyl serine and diacylglycerol) requirements for the activation of the enzyme. Removal of the basic residues lysine and arginine from the amino terminus of MLC(3-13) did not have a significant effect on the Ka value of diacylglycerol. The binding of effector to calcium-protein kinase C appears to be random since binding of one effector did not block the binding of the other.
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Structure-Activity Study of a-N-Methylated SHU9119 Analogues, hMC4R/TNF-a Antagonists, and Mutational Studies of the Melanocyte Stimulating Hormone ReceptorZingsheim, Morgan Robert January 2009 (has links)
The human melanocortin receptors (hMCRs) play a fundamental role in human behavior such as satiety, feeding, sexual and more. A set of SHU9119 peptide derivatives were studied for their structure-activity relationships. These peptides contained a sequential a-N-methylation amino acid scan.A second set of peptide derivatives intended to be used to create TNF-a; inhibition, via the melanocortin receptors. These peptides were shown to bind to all of the hMCR receptors, and only exhibit cAMP stimulation at hMC1R/hMC5R.The data from both of the sets of compounds illustrate that small changes in the stereochemistry of the SH9119 and TNF-a; derivatives cause drastic changes in the binding and the agonistic/antagonist properties of the compounds.This thesis determined the effect that hMC1R mutations have on the binding and cAMP response of well characterized ligands. This study ruled out 9 different residues for being the required for the cAMP response of the hMC1R.
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Synthetic peptides modulate epithelial junctionsYi, Sheng January 1900 (has links)
Master of Science / Department of Biochemistry / Bruce D. Schultz / John M. Tomich / Peptides based on the second transmembrane segment of the glycine receptor (M2GlyR) were made to provide a potential therapeutic treatment for cystic fibrosis (CF) and a latent absorption enhancer for drug delivery. For similarity of presentation, unique synthetic peptide sequences have been given alpha-numeric designations. Results are presented from studies focusing on four peptides.
In the first study, the contributions of synthetic peptides p1171, p1172 and p1173 to net transepithelial ion transport were measured as a first step toward the goal of testing whether pore length or electrostatics of pore lining residues will affect anion transport. Peptide p1130 exhibits many attributes that make it an ideal synthetic peptide for CF treatment, but has low permselectivity for anions. Therefore, it is used as a platform for modification. Peptide p1171 is doubly substituted with diaminopropionic acid at positions T13 and T17. Peptide p1172 and p1173 are separately one and two helical turn(s) inserted into the p1130 backbone. Apical exposure of MDCK monolayers to these peptides caused a rapid increase in short circuit current (Isc), an indicator of net ion transport. The increase in Isc caused by p1172 or p1173 was accompanied by increase in transepithelial electrical conductance (gte). The electrophysiological results suggested that these modified peptides can assemble in the apical membrane of epithelial cells to form functional ion-conducting pores.
Peptide NC-1059, which provides for ion transport across epithelial cells derived from many sources, was studied further to assess cellular changes that account for increased gte. NC-1059 increased Isc, gte and enhanced permeation of dextrans in a concentration dependent manner. Results from previous and current studies show that NC-1059 modulated the epithelial paracellular pathway by altering the distribution and abundance of junctional proteins. Immunoblotting and immunolabeling with confocal microscopy showed that NC-1059 induces reorganization of actin and causes a reduction in F-actin abundance in epithelial cells. The distributions were changed and cellular abundances were reduced of tight junction proteins occludin and ZO-1 and adherens junction proteins E-cadherin and β-catenin by NC-1059. These effects were largely reversed in 24 hr and fully recovered in 48 hr. Therefore, NC-1059 has the therapeutic potential to increase the efficiency of drug delivery across barrier membranes.
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Peptídeos sintéticos selecionados a partir de seqüências de aminoácidos da Taenia crassiceps e homólogas às Taenia solium com potencial aplicação no diagnóstico da cisticercose / Selected synthetic peptides from amino acids sequences of Taenia crassiceps and homologous to Taenia solium with potential application to diagnosis of cysticercosisFarias, Cristiane Rocha de 07 November 2006 (has links)
A utilização de antígenos de Taenia crassiceps vem se mostrando como via alternativa no imunodiagnóstico da neurocisticercose (NC), sendo as frações de 18 e 14 kDa consideradas específicas. No presente trabalho, foram sintetizados seis peptídeos, com base nas seqüências de aminoácidos das proteínas de 10, 14 e 18 kDa de T. crassiceps e homólogas às seqüências de aminoácidos de T. solium. Os peptídeos foram divididos em \"a\" e \"b\", denominados como, P1a, P2a, P3a e P4a e P1b, P3b e P4b, sendo, as seqüências de aminoácidos dos peptídeos \"a\", uma seqüência interna dos peptídeos \"b\". Em estudo da antigenicidade dos peptídeos conduzido por teste ELISA, P1a e P4a isolados ou utilizados como múltiplos peptídeos antigênicos (MAP) contendo dois, três ou quatro peptídeos, apresentaram reatividade com soro hiperimune anti-líquido vesicular de T. crassiceps, enquanto que MAPs contendo apenas P2a e P3a não foram antigênicos. Anticorpos monoclonais (AcMos) anti-T. crassiceps (n=3) e anti-T. solium (n=19), reconheceram, em ordem decrescente, P1b (72,7%), P1a (45,5%) e P3a e P2a (9,1%), enquanto que P3b, P4a e P4b não apresentaram reatividade com os AcMos utilizados. Com soros humanos de pacientes com NC (NC) e de indivíduos supostamente saudáveis (ISS), P1b e P1a foram considerados potencialmente antigênicos, isolados ou em MAPs com três ou quatro peptídeos. A avaliação do teste ELISA com peptídeo sintético isolado ou MAP, respectivamente, P1b e MAP-a (P1a+P3a+P4a), foi realizada baseando-se em três diferentes cut off, a, b e TG-ROC. De acordo com os cut off utilizados, ELISA com P1b apresentou índices de positividade entre 59,0-79,5% com amostras de soros NC (n=39); 1,3-11,8% com ISS (n=76); 3,4-10,2% com amostras de soros de pacientes com hidatidose provindos do Rio Grande do Sul (H-R) (n=59); 0,0-50,0% com amostras de soros de pacientes com hidatidose provindos do Peru (H-P) (n=8) e 0,0-9,1% com amostras de soros de pacientes com outras parasitoses (OP) (n=33). ELISA com MAP-a apresentou índices de positividade entre 57,7-92,3% com NC (n=26); 1,4-9,6% com ISS (n=73); 0,0-13,3% com H-R (n=15) e 12,5-37,5% com H-P (n=8). Na tentativa de aumentar a positividade do teste ELISA com peptídeos sintéticos, antígeno de 18 e14 kDa de T. crassiceps foi adicionado, porém, não houve maior antigenicidade ao complexo antigênico. Os peptídeos sintéticos utilizados mostraram-se promissores para o diagnóstico sorológico da NC, porém, não foram representativos dos epítopos imunodominantes presentes em cisticercos de T. solium. Outras seqüências de aminoácidos necessitam ser ensaiadas, a fim de obter um complexo antigênico sintético equivalente ao antígeno nativo, porém, o alto custo da síntese dos peptídeos ainda é uma barreira que limita a investigação de novos MAPs. / Taenia crassiceps antigens have been showed like one alternative rote to the immunodiagnosis of neurocysticercosis (NC), where 18- and 14-kDa fractions have been considered specific. In this study, six peptides were synthesized based on 10, 14 and 18 kDa fractions of amino acids sequence of proteins of the T.crassiceps and homologous to T. solium. Peptides were divided in \"a\" and \"b\", denominated P1a, P2a, P3a and P4a and P1b, P3b and P4b, being that amino acids sequences of the \"a\" peptides are one internal sequence of the \"b\" peptides. In antigenic study of the peptides conducted by ELISA, isolated P1a and P4a peptides or used like multiple antigenic peptides (MAP) with two, three or four peptides, cross-reacted with anti-vesicular fluid of the T. crassiceps hyperimmune serum, while that, MAPs with only P2a and P3a did not showed antigenicity. Monoclonal antibodies (Mabs) anti-T. crassiceps (n=3) and anti-T.solium (n=19) Mabs recognized in decreasing order, P1b (72,7%), P1a (45,5%) and P3a and P2a (9,1%), while, P3b, P4a and P4b did not showed reactivity with Mabs used. In human serum samples of the patients with neurocysticercosis (NC) and serum healthy individuals (HI), where P1b and P1a peptides were analyzed isolated or in MAPs with three or four peptides, both of them showed antigenic potential. The evaluation of the ELISA tests with synthetic peptides isolated or in MAPs, P1b and MAP-a (P1a+P3a+P4a), respectively, was analyzed in three differents cut off, a, b and TG-Roc. Based on its, ELISA assayed with P1b showed 59,0-79,5% positivity when NC serum samples where tested (n=39); 1,3-11,8% with HI serum samples (n=76); 3,4-10,2% with human serum samples of the patients with hydatidosis from Rio Grande do Sul (H-R) (n=59); 0,0-50,0% with human serum samples of the patients with hydatidosis from Peru (H-P) (n=8) and 0,0-9,1% with human serum samples of the patients with others parasitoses (OP) (n=33). By the way, ELISA assayed with MAP-a showed 57,7-92,3% positivity with NC (n=26); 1,4-9,6% with HI (n=73); 0,0-13,3% with H-R (n=15) and 12,5-37,5% with H-P (n=8). On the attempt of increase the positivity of the ELISA test using synthetic peptides, 18- and 14-kDa fractions of the T. crassiceps was added, but they did not promoted more antigenicity. Synthetic peptides used showed promising results on neurocysticercosis serumdiagnosis, but they were no representatives of dominants epitopes present in T. solium cysticercus. Others amino acids sequences need be used to have a synthetic antigenic complex similar to native antigens, however, the high cost of the peptide synthesis still is a problem that limit the study of the news MAPs.
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Σχεδιασμός, σύνθεση και μελέτη βιολογικών δράσεων πεπτιδίων της HARP / Design, synthesis and study of the biological activities of HARP's (Heparin affin regulatory peptide) synthetic peptidesΗλιάδου, Ελένη 16 June 2010 (has links)
Η Heparin affin regulatory peptide (HARP) είναι ένας αυξητικός παράγοντας με μοριακό βάρος 18 kDa, που έχει μεγάλη συγγένεια με την ηπαρίνη. Είναι συντηρημένη μεταξύ διαφόρων ειδών και παρουσιάζει 50% ομολογία με τη Midkine και την RI-HBP. Οι πρωτεΐνες αυτές συγκροτούν μια σχετικά νέα οικογένεια αυξητικών παραγόντων που έχουν συγγένεια με την ηπαρίνη. Η HARP απομονώθηκε για πρώτη φορά από τον εγκέφαλο νεογέννητου βοός ως ένα μόριο που μπορεί να επάγει την προέκταση των νευρικών κυττάρων. Επίσης, εκφράζεται στη μήτρα, στους χόνδρους και στα οστά. Αρκετές αναφορές αποδεικνύουν ότι υπάρχει μεγάλη συσχέτιση μεταξύ της έκφρασης της HARP και της ανάπτυξης καρκινικού όγκου και της αγγειογένεσης.
Η HARP αποτελεί μιτογόνο παράγοντα για διάφορους τύπους ενδοθηλιακών κυττάρων, ενώ μπορεί να επάγει την αγγειογένεση in vivo και in vitro. Ασκεί τη βιολογική της δράση μετά από αλληλεπίδραση με πρωτεογλυκάνες της επιφάνειας του κυττάρου, όπως η N-συνδεκάνη, ή μετά από δέσμευση σε πιο ειδικούς υποδοχείς. Η RPTPβ/ζ, η εκκρινόμενη μορφή της (φωσφακάνη), αλλά και η κινάση ALK, έχει αναφερθεί ότι μπορούν να δεσμεύουν τη HARP και να συμμετέχουν στη μεταγωγή του σήματός της.
Ο κύριος σκοπός αυτής της διατριβής είναι η μελέτη της δομής και της δράσης της HARP, χρησιμοποιώντας μικρότερα τμήματα της HARP τα οποία τα έχουμε βιοτινυλιώσει για να διερευνήσουμε τις περαιτέρω δράσεις της, τους διάφορους μηχανισμούς και με ποιους υποδοχείς αλληλεπιδρά.
Τα βιοτινυλιωμένα-σεσημασμένα πεπτίδια αποτελούν χρήσιμα εργαλεία για την βιοτεχνολογία, σε διάφορες εφαρμογές στερεής φάσης ανοσολογικών δοκιμών καθώς και τον εντοπισμό των υποδοχέων.
Τα συνθετικά πεπτίδια της HARP συντέθηκαν με μεθοδολογία Fmoc/t-Bu σε στερεά φάση χρησιμοποιώντας ως στερεό υπόστρωμα τη 2-χλωροτρίτυλ-ρητίνη για την παραλαβή μιας ελεύθερης αμινοομάδας (ΝΗ2) και C-τελικού καρβοξυλικού οξέος αντίστοιχα. Για την παραγωγή βιοτινυλιωμένων πεπτιδίων, περιλαμβάνει τον σχηματισμό ενός δεσμού: της ελεύθερη αμινοομάδα με την βιοτίνη στην διάρκεια της πεπτιδικής σύνθεσης στερεής φάσης. Επειδή η βιοτίνη έχει μικρή διαλυτότητα στα διαλύματα της πεπτιδικής σύνθεσης χρησιμοποιούμε τους προσχηματισμένους ενεργοποιημένους εστέρες όπως την βιοτίνη- ONp (biotin p-nitrophenyl ester ).
Τα συνθετικά πεπτίδια P(13-39) και Ρ (65-97), που αντιστοιχούσαν στην Ν-CTR-I και C-TSR-I περιοχή της HARP μελετήθηκαν ως προς την επίδρασή τους στον πολλαπλασιασμό και στην μετανάστευση των καρκινικών κυττάρων του προστάτη (PC3). / Heparin affin regulatory peptide (HARP) is an 18 kDa growth factor that has a high affinity for heparin. HARP is highly conserved among species and shares 50% homology with Midkine and RI-HBP. The above proteins constitute a relatively new family of growth factors with high affinity for heparin. HARP has been originally purified from perinatal rat and bovine brain as a molecule that induces neurite outgrowth. HARP is also expressed in uterus, cartilage and bone extracts. Several reports have established a strong correlation between HARP expression and tumour growth and angiogenesis.
HARP has been reported to be mitogenic for different types of endothelial cells and angiogenic in vivo and in vitro. HARP exerts its biological activity through interactions with cell surface proteoglycans, such as N-syndecan, or binding to more specific cell surface receptors. Receptor-type protein tyrosine-phosphatase β/ζ (RPTPβ/ζ) and its secreted variant phosphacan, as well as ALK are implicated in HARP signalling.
The main target of this study is to investigate the structure and the biological activities of HARP, using smaller fragments of HARP which are biotinylated in order to study its further activities, the mechanisms and the interactions with the receptor.
Biotin-labelled peptides are extremely useful tools for biochemistry, with applications in solid-phase immunoassays, affinity purification and receptor localization.
The synthetic peptides of HARP were synthesized by Fmoc/t-Bu solid phase methodology utilizing a 2-chlorotrityl-chloride resin to provide a free NH2- amino-group and carboxyl acid, respectively. The simplest approach for the production of biotin-labelled peptides involves capping of a resin-bound free amino group with biotin, prior to cleavage of the peptide from the resin and side-chain deprotection. Because of the poor solubility of biotin in peptide synthesis solvents, biotin is most frequently introduced using a pre-formed active ester, such as biotin p-nitrophenyl ester.
The synthetic peptides, P(13-39) and P(65-97) with amino acids sequence corresponding to the N- and C-TSR-I domains of HARP, were studied for their impact to the proliferation and chemotactic (migration) on prostate cancer cells (PC3).
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Peptídeos sintéticos selecionados a partir de seqüências de aminoácidos da Taenia crassiceps e homólogas às Taenia solium com potencial aplicação no diagnóstico da cisticercose / Selected synthetic peptides from amino acids sequences of Taenia crassiceps and homologous to Taenia solium with potential application to diagnosis of cysticercosisCristiane Rocha de Farias 07 November 2006 (has links)
A utilização de antígenos de Taenia crassiceps vem se mostrando como via alternativa no imunodiagnóstico da neurocisticercose (NC), sendo as frações de 18 e 14 kDa consideradas específicas. No presente trabalho, foram sintetizados seis peptídeos, com base nas seqüências de aminoácidos das proteínas de 10, 14 e 18 kDa de T. crassiceps e homólogas às seqüências de aminoácidos de T. solium. Os peptídeos foram divididos em \"a\" e \"b\", denominados como, P1a, P2a, P3a e P4a e P1b, P3b e P4b, sendo, as seqüências de aminoácidos dos peptídeos \"a\", uma seqüência interna dos peptídeos \"b\". Em estudo da antigenicidade dos peptídeos conduzido por teste ELISA, P1a e P4a isolados ou utilizados como múltiplos peptídeos antigênicos (MAP) contendo dois, três ou quatro peptídeos, apresentaram reatividade com soro hiperimune anti-líquido vesicular de T. crassiceps, enquanto que MAPs contendo apenas P2a e P3a não foram antigênicos. Anticorpos monoclonais (AcMos) anti-T. crassiceps (n=3) e anti-T. solium (n=19), reconheceram, em ordem decrescente, P1b (72,7%), P1a (45,5%) e P3a e P2a (9,1%), enquanto que P3b, P4a e P4b não apresentaram reatividade com os AcMos utilizados. Com soros humanos de pacientes com NC (NC) e de indivíduos supostamente saudáveis (ISS), P1b e P1a foram considerados potencialmente antigênicos, isolados ou em MAPs com três ou quatro peptídeos. A avaliação do teste ELISA com peptídeo sintético isolado ou MAP, respectivamente, P1b e MAP-a (P1a+P3a+P4a), foi realizada baseando-se em três diferentes cut off, a, b e TG-ROC. De acordo com os cut off utilizados, ELISA com P1b apresentou índices de positividade entre 59,0-79,5% com amostras de soros NC (n=39); 1,3-11,8% com ISS (n=76); 3,4-10,2% com amostras de soros de pacientes com hidatidose provindos do Rio Grande do Sul (H-R) (n=59); 0,0-50,0% com amostras de soros de pacientes com hidatidose provindos do Peru (H-P) (n=8) e 0,0-9,1% com amostras de soros de pacientes com outras parasitoses (OP) (n=33). ELISA com MAP-a apresentou índices de positividade entre 57,7-92,3% com NC (n=26); 1,4-9,6% com ISS (n=73); 0,0-13,3% com H-R (n=15) e 12,5-37,5% com H-P (n=8). Na tentativa de aumentar a positividade do teste ELISA com peptídeos sintéticos, antígeno de 18 e14 kDa de T. crassiceps foi adicionado, porém, não houve maior antigenicidade ao complexo antigênico. Os peptídeos sintéticos utilizados mostraram-se promissores para o diagnóstico sorológico da NC, porém, não foram representativos dos epítopos imunodominantes presentes em cisticercos de T. solium. Outras seqüências de aminoácidos necessitam ser ensaiadas, a fim de obter um complexo antigênico sintético equivalente ao antígeno nativo, porém, o alto custo da síntese dos peptídeos ainda é uma barreira que limita a investigação de novos MAPs. / Taenia crassiceps antigens have been showed like one alternative rote to the immunodiagnosis of neurocysticercosis (NC), where 18- and 14-kDa fractions have been considered specific. In this study, six peptides were synthesized based on 10, 14 and 18 kDa fractions of amino acids sequence of proteins of the T.crassiceps and homologous to T. solium. Peptides were divided in \"a\" and \"b\", denominated P1a, P2a, P3a and P4a and P1b, P3b and P4b, being that amino acids sequences of the \"a\" peptides are one internal sequence of the \"b\" peptides. In antigenic study of the peptides conducted by ELISA, isolated P1a and P4a peptides or used like multiple antigenic peptides (MAP) with two, three or four peptides, cross-reacted with anti-vesicular fluid of the T. crassiceps hyperimmune serum, while that, MAPs with only P2a and P3a did not showed antigenicity. Monoclonal antibodies (Mabs) anti-T. crassiceps (n=3) and anti-T.solium (n=19) Mabs recognized in decreasing order, P1b (72,7%), P1a (45,5%) and P3a and P2a (9,1%), while, P3b, P4a and P4b did not showed reactivity with Mabs used. In human serum samples of the patients with neurocysticercosis (NC) and serum healthy individuals (HI), where P1b and P1a peptides were analyzed isolated or in MAPs with three or four peptides, both of them showed antigenic potential. The evaluation of the ELISA tests with synthetic peptides isolated or in MAPs, P1b and MAP-a (P1a+P3a+P4a), respectively, was analyzed in three differents cut off, a, b and TG-Roc. Based on its, ELISA assayed with P1b showed 59,0-79,5% positivity when NC serum samples where tested (n=39); 1,3-11,8% with HI serum samples (n=76); 3,4-10,2% with human serum samples of the patients with hydatidosis from Rio Grande do Sul (H-R) (n=59); 0,0-50,0% with human serum samples of the patients with hydatidosis from Peru (H-P) (n=8) and 0,0-9,1% with human serum samples of the patients with others parasitoses (OP) (n=33). By the way, ELISA assayed with MAP-a showed 57,7-92,3% positivity with NC (n=26); 1,4-9,6% with HI (n=73); 0,0-13,3% with H-R (n=15) and 12,5-37,5% with H-P (n=8). On the attempt of increase the positivity of the ELISA test using synthetic peptides, 18- and 14-kDa fractions of the T. crassiceps was added, but they did not promoted more antigenicity. Synthetic peptides used showed promising results on neurocysticercosis serumdiagnosis, but they were no representatives of dominants epitopes present in T. solium cysticercus. Others amino acids sequences need be used to have a synthetic antigenic complex similar to native antigens, however, the high cost of the peptide synthesis still is a problem that limit the study of the news MAPs.
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Σύνθεση του RGD και αναλόγων του με ενσωματωμένα παράγωγα σαλικυλικού οξέος και μελέτη της αντιπηκτικής τους δράσηςΣαρηγιάννης, Ιωάννης 20 September 2010 (has links)
Η συγκόλληση των αιμοπεταλίων προάγεται από το ινωδογόνο, μια εξωκυττάρια πρωτεΐνη, η οποία δεσμεύεται εκλεκτικά στον υποδοχέα GP IIb/IIIa. Το τριπεπτίδιο RGD (Arg-Gly-Asp) συνιστά τη μικρότερη αλληλουχία, η οποία είναι απαραίτητη για την αναγνώριση και πρόσδεση του ινωδογόνου στον υποδοχέα και απαντάται και σε άλλες συγκολλητικές πρωτεΐνες, οι οποίες είναι παρούσες στον εξωκυττάριο χώρο και στο αίμα, όπως η ινοσυνδετίνη, το κολλαγόνο, ο παράγοντας Von Willebrand, κτλ.
Η αντιπηκτική θεραπεία έχει βασιστεί σε δύο διαφορετικές προσεγγίσεις του προβλήματος. Η μία προσέγγιση αφορά την εμπόδιση της πρωταρχικής διέγερσης των αιμοπεταλίων από διάφορους αγωνιστές, όπως θρομβίνη, επινεφρίνη, κολλαγόνο, κτλ. Η άλλη προσέγγιση περιλαμβάνει την διακοπή του μηχανισμού μεταγωγής σήματος, ο οποίος ακολουθεί την πρόσδεση του αγωνιστή στην επιφάνεια των αιμοπεταλίων. Η ασπιρίνη, παράγωγο του σαλικυλικού οξέος, αναστέλλει το πρώτο βήμα στη βιοσύνθεση της θρομβοξάνης Α2 από αραχιδονικό οξύ μέσω ακετυλίωσης του ενζύμου κυκλοοξυγενάση 1.
Στην παρούσα διατριβή πραγματοποιήθηκε ο σχεδιασμός και η σύνθεση γραμμικών και κυκλικών αναλόγων του τριπεπτιδίου RGD με ενσωματωμένο σαλικυλικό οξύ ή παράγωγά του. Τα διάφορα ανάλογα συντέθηκαν με κλασικές μεθόδους πεπτιδικής σύνθεσης σε υγρή και στερεά φάση.
Τη σύνθεση των αναλόγων ακολούθησε καθαρισμός τους (HPLC) και προσδιορισμός της δομής τους με (ESI-MS). Στη συνέχεια, προσδιορίστηκε in vitro με φωτομετρική μέθοδο στους 37C και συνεχή καταγραφή της διερχόμενης ακτινοβολίας με ειδικό όργανο (Dual Channel Aggregometer) η ανασταλτική τους δράση στη συγκολλητικότητα των αιμοπεταλίων του ανθρώπου. Προς περαιτέρω επιβεβαίωση των πειραμάτων συσσώρευσης και μελέτη της πρόσδεσης των αναλόγων στις ιντεγκρίνες χρησιμοποιήθηκε η κυτταρομετρία ροής με μονοκλωνικά αντισώματα έναντι των υποδοχέων Gp Ia, Gp IIb/IIIa, Gp IIIa και GMp 140.
Αναλύοντας τα αποτελέσματα των βιολογικών μελετών, τόσο της αναστολής της συσσωμάτωσης των αιμοπεταλίων του ανθρώπου in vitro όσο και της κυτταρομετρίας ροής σε ενεργοποιημένα αιμοπετάλια για τα δραστικά πεπτίδια, οδηγούμαστε στα επόμενα συμπεράσματα:
1. Από τη σειρά των RGD γραμμικών αναλόγων που μελετήθηκαν, βρέθηκαν δραστικά μόνο στην περίπτωση που τα πεπτίδια έχουν στο C-τελικό τους άκρο αμίδιο.
2. Η σύζευξη του σαλικυλικού οξέος στο τριπεπτίδιο - αμίδιο RGD ενισχύει την αντισυγκολλητική του δράση έναντι των αιμοπεταλίων in vitro. Από αυτά τα ανάλογα 26 (IC50= 50μΜ), 27 (38μΜ) και 28 (53μΜ) (ενσωματωμένο σαλικυλικό οξύ στο τριπεπτίδιο) έχουν την ισχυρότερη δράση, ενώ μόνο το τριπεπτίδιο 23 έχει IC50= 540μΜ
3. Η προστασία του β-καρβοξυλίου του Asp με βενζυλομάδα αυξάνει τη δράση του πεπτιδίου σε σχέση με την ύπαρξη ελεύθερου β-καρβοξυλίου. Αυτό διαπιστώνεται από το γεγονός ότι όλα τα βιολογικώς δραστικά ανάλογα έχουν το β-καρβοξύλιο προστατευμένο με βενζυλομάδα και αυτό έρχεται σε συμφωνία με βιβλιογραφικά δεδομένα άλλων ερευνητών περί αναγκαιότητας ύπαρξης λιπόφιλης ομάδας στο C-τελικό άκρο του πεπτιδίου.
4. Αντίθετα, η ενσωμάτωση σαλικυλο-παραγώγων (βρώμο-, χλώρο-, νίτρο-, άμινο-, κτλ) στα ανάλογα δίνει πολύ μικρή αντισυγκολλητική δράση στα αιμοπετάλια του ανθρώπου in vitro σε σχέση με το σαλικυλικό οξύ.
5. Από τα συντεθέντα κυκλικά ανάλογα μόνο το ανάλογο 61, που φέρει δισουλφιδικό δεσμό μεταξύ της κυστεΐνης και του θειοσαλικυλικού οξέος, επέδειξε ισχυρή αντισυγκολλητική δράση έναντι των αιμοπεταλίων του ανθρώπου in vitro με τιμή IC50= 8μΜ, που είναι και η καλύτερη τιμή IC50 για όλα τα ανάλογα που συντέθηκαν (γραμμικά και κυκλικά).
6. Και στην περίπτωση των κυκλικών πεπτιδίων, τα ανάλογα με το προστατευμένο β-καρβοξύλιο εμφανίζουν ισχυρότερη ανασταλτική δράση έναντι εκείνων που φέρουν το β-καρβοξύλιο ελεύθερο.
7. Από όλα τα γραμμικά ανάλογα που περιέχουν παράγωγα του σαλικυλικού οξέος το ανάλογο 39 που περιέχει το 5-χλωρο σαλικυλικό οξύ εμφανίζει ισχυρή ανασταλτική δράση έναντι του υποδοχέα Gp Ib.
8. Τέλος, θα πρέπει να αναφερθεί ότι είναι η πρώτη φορά που συνθετικά πεπτιδικά ανάλογα του RGD εμφανίζουν ισχυρή πρόσδεση στον υποδοχέα Gp Ib, o οποίος ευθύνεται για την προσκόλληση των αιμοπεταλίων στο κυτταρικό τοίχωμα. / Integrins constitute a large family of heterodimeric cell-surface, transmembrane receptors, which play a major role in cell/cell and cell/matrix adhesive interactions. The Arg-Gly-Asp (RGD) sequence is known to be the integrin recognition site of many extracellular matrix proteins such as fibronectin, osteopontin, collagen, fibrinogen, von Willebrand factor, laminin, etc. On the other hand, it is well known that low doses of aspirin (acetyl salicylic acid) decrease platelet aggregation by causing an inhibitory effect on thromboxane A2 production by platelets. Several antiplatelet strategies have already been developed and are under preclinical or clinical investigation. In the present thesis, the synthesis of linear and cyclic RGD analogs incorporating salicylic acid derivatives is reported. The syntheses of the new analogs were carried out by using classic methods of peptide synthesis in liquid or solid phase. The synthesized compounds were purified by RP-HPLC and lyophilised to give fluffy solid, identified by ESI-MS spectra.
These compounds were tested for inhibitory activity on human platelet aggregation in vitro, by adding common aggregation reagents to citrated platelet rich plasma (PRP). The aggregation was determined using a dual channel electronic aggregometer by recording the increase of light transmission. Their specificity for the Gp receptors was checked by using flow cytometry with monoclonal antibodies against Gp Ib, Gp IIb/IIIa, Gp IIIa and GMP140 receptors.
Based on the results of the biological studies we could report the next inferences:
1. From the studied synthetic RGD analogs only peptides – amides are active against human platelet aggregation in vitro.
2. The coupling of salicylic acid with the RGD peptides enforces the antiplatelet activity in vitro of the single tripeptide. From the above peptides, the analog 26 (tripeptide incorporating salicylic acid) shows strong antiplatelet activity (IC50=50 μΜ), whereas the analog 23 (only tripeptide) has IC50= 540μΜ.
3. The protection of the β-carboxy group of Asp as benzylester increases the activity of the peptides in comparison with those having the β-carboxy group unprotected. Thus, our results ensure the theory of necessity of the existence a lipophile center on the C-terminal side of the peptide.
4. The incorporation of salicylic acid derivatives in the RGD peptide does not increase further the antiplatelet activity than the incorporation of salicylic acid does.
5. Among the cyclic RGD peptides only the analog 61, having the disulfide bridge between the cysteine and the thiosalicylic acid, shows strong antiplatelet activity in vitro (IC50= 8μΜ).
6. Most of the analogs show high binding affinity for the Gp Ib receptor. The cyclic analog 61 shows special selectivity for this receptor at concetrations of 110 μΜ.
7. The analog 39, although it shows low antiplatelet activity, has high binding affinity for the Gp Ib receptor. Probably, this activity is due to the atom of Cl at the 5 position of aromatic ring of salicylic acid.
8. According to the literature data, it is the first time that synthetic RGD peptides show strong binding affinity for the Gp Ib receptor, which is responsible for the platelet adhesion to the subenthothelium.
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Avaliação da resposta imunológica a peptídeos sintéticos mimetopos de proteínas totais de larvas do carrapato Boophilus microplus (Acari: ixodidae) em camundongos e bovinos / Evaluation of the immunologic response from synthetic mimetic peptides of total larva proteins of Boophilus microplus tick (Acari: ixodidae) in mice and bovinesMarra, Andréa de Oliveira Marques 30 June 2004 (has links)
The Boophilus microplus tick is one of the most important arthropods that can
parasitize bovines, causing great damages to the world livestock through direct
and indirect effects. The application of chemical products is the principal
method of controlling this parasite, but in function of the disadvantages of this
practice, the use of vaccines is a good alternative, because they are residue
free, specifics and present smaller possibility to develop resistance. With the
objective of selecting synthetic peptides expressed in the capsid of phage
display bacteriophages, it was produced the serum policlonal in chickens
previously sensitized with total larva proteins of the Boophilus microplus tick.
The peptides found in larger frequency and with larger antigenic index
(bioinformatics and dot blotting with chicken serum) were selected for the
immunization of mice and bovines. The initial data infer that the peptides in
phagos induced immune response, evaluated by Elisa test, and the more
immunogenic are: 2D7 (SNNADYKQSLL), 2E6 (VNWNSWHKTNLS), 2F3
(SIPTYTPDKVTY) and 2E4 (DAWKMRLSQMYD). The sequences selected in
the present work introduce the protean motives NxxxKxxL (2D7, 2E6 and 2E4)
and the motive TPDKS (2E4). These sequences presented structural similarities
with some tick proteins, mainly the calreticulin. Complementary studies are
being accomplished to characterize the sensibility and specificity to the selected
peptides. / O carrapato Boophilus microplus é um dos mais importantes artrópodes que
parasitam os bovinos, causando grandes prejuízos à pecuária mundial pelos
seus efeitos diretos e indiretos. A aplicação de produtos químicos é o principal
método de controle deste parasita, mas em função das desvantagens desta
prática, o uso de vacinas é uma boa alternativa, por serem livres de resíduos,
específicas e apresentarem menor possibilidade de desenvolver resistência.
Com o objetivo de selecionar peptídeos sintéticos expressos no capsídeo de
bacteriófagos phage display produziu-se soro policlonal em galinhas
previamente sensibilizadas com proteínas totais de larvas do carrapato
Boophilus microplus. Os peptídeos encontrados em maior freqüência e com
maior índice antigênico (bioinformática e dot blotting com soro de galinha),
foram selecionados para a imunização de camundongos e bovinos. Os dados
iniciais inferirem que os peptídeos em fagos induziram resposta imune,
avaliada pelo teste de Elisa, sendo os mais imunogênicos o 2D7
(SNNADYKQSLLL), o 2E6 (VNWNSWHKTNLS), o 2F3 (SIPTYTPDKVTY) e o
2E4 (DAWKMRLSQMYD). As seqüências selecionadas no presente trabalho
apresentam os motivos protéicos NxxxKxxL (2D7, 2E6 e 2E4) e o motivo
TPDKS (2E4). Estas seqüências apresentaram similaridades estruturais com
algumas proteínas do carrapato principalmente a calreticulina. Estudos
complementares estão sendo realizados para caracterizar a sensibilidade e
especificidade aos peptídeos selecionados. / Doutor em Genética e Bioquímica
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Effect of Topography on Mouse Embryonic Stem Cells During Pluripotency and Neural DifferentiationNasir, Wafaa 01 October 2018 (has links)
No description available.
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