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  • About
  • The Global ETD Search service is a free service for researchers to find electronic theses and dissertations. This service is provided by the Networked Digital Library of Theses and Dissertations.
    Our metadata is collected from universities around the world. If you manage a university/consortium/country archive and want to be added, details can be found on the NDLTD website.
201

Triazole-linked reduced amide isosteres: An approach for the fragment-based drug discovery of anti-Alzheimer's BACE1 inhibitors and NH-assisted Fürst-Plattner opening of cyclohexene oxides

Monceaux, Christopher Jon 14 January 2011 (has links)
In the scope of our BACE1 inhibitor project we used an originally designed microtiter plate-based screening to discover 4 triazole-linked reduced amide isosteres that showed modest (single digit micromolar) BACE1 inhibition. Our ligands were designed based on a very potent (single digit nanomolar) isopththalamide ligand from Merck. We supplanted one of the amide linkages in order to incorporate our triazole and saw a 1000-fold decrease in potency. We then enlisted Molsoft, L.L.C. to compare our ligand to Merck's in silico to account for this discrepancy. They found that the triazole linkage gives rise to a significantly different docking pose in the active site of the BACE1 enzyme, therefore diminishing its potency relative to the Merck ligand. The ability to control the regio- and stereochemical outcome of organic reactions is an ongoing interest and challenge to synthetic chemists. The pre-association of reacting partners through hydrogen bonding (H-bonding) can often to yield products with extremely high stereoselectivity. We were able to show that anilines, due to their enhanced acidity relative to amines, can serve as substrate directing moieties in the opening of cyclohexene oxides. We observed that by judicious choice of conditions we could control the regiochemical outcome of the reaction. These studies demonstrate that an intramolecular anilino-NH hydrogen bond donor can direct Fürst-Plattner epoxide opening. A unified mechanism for this phenomenon has been proposed in this work which consists of a novel mechanistic route we call "NH-directed Fürst-Plattner." We further studied the opening of cyclohexene oxides by incorporating amide and amide derivative substituents in both the allylic and homoallylic position relative to the epoxide moiety. Our attempts to control regioselectivity in the allylic systems were unsuccessful; however when the directing substituent was in the homoallylic position, we could demonstrate some degree of regioselectivity. An additional project that the author worked on for approximately one year during his graduate student tenure is not described within this work. In February of 2009 AstraZeneca, Mayo Clinic, and Virginia Tech Intellectual Properties Inc. concomitantly announced that AstraZeneca licensed a portfolio of preclinical Triple Reuptake Inhibitor (TRI) compounds for depression. The lead compound, PRC200, was discovered by a collaborative effort between the Carlier and Richelson (Mayo Clinic Jacksonville) research groups in 1998. The author was tasked to develop backup candidates of PRC200 in order to improve the pharmacokinetics of the lead compound. Due to confidentiality agreements, this work is not reported herein. / Ph. D.
202

Identification of protein targets of nevirapine reactive metabolites using click chemistry and mass spectrometry-based differential proteomics

Eloraby, Ghada January 2016 (has links)
Abstract : Adverse drug reactions (ADRs) are undesirable effects caused after administration of a single dose or prolonged administration of drug or result from the combination of two or more drugs. Idiosyncratic drug reaction (IDR) is an adverse reaction that does not occur in most patients treated with a drug and does not involve the therapeutic effect of the drug. IDRs are unpredictable and often life-threatening. Idiosyncratic reaction is dependent on drug chemical characteristics or individual immunological response. IDRs are a major problem for drug development because they are usually not detected during clinical trials. In this study we focused on IDRs of Nevirapine (NVP), which is a non-nucleoside reverse transcriptase inhibitor used for the treatment of Human Immunodeficiency Virus (HIV) infections. The use of NVP is limited by a relatively high incidence of skin rash. NVP also causes a rash in female Brown Norway (BN) rats, which we use as animal model for this study. Our hypothesis is that idiosyncratic skin reactions associated with NVP treatment are due to post-translational modifications of proteins (e.g., glutathionylation) detectable by MS. The main objective of this study was to identify the proteins that are targeted by a reactive metabolite of Nevirapine in the skin. The specific objectives derived from the general objective were as follow: 1) To implement the click chemistry approach to detect proteins modified by a reactive NVP-Alkyne (NVP-ALK) metabolite. The purpose of using NVP-ALK was to couple it with Biotin using cycloaddition Click Chemistry reaction. 2) To detect protein modification using Western blotting and Mass Spectrometry techniques, which is important to understand the mechanism of NVP induced toxicity. 3) To identify the proteins using MASCOT search engine for protein identification, by comparing obtained spectrum from Mass Spectrometry with theoretical spectrum to find a matching peptide sequence. 4) To test if the drug or drug metabolites can cause harmful effects, as the induction of oxidative stress in cells (via protein glutathionylation). Oxidative stress causes cell damage that mediates signals, which likely induces the immune response. The results showed that Nevirapine is metabolized to a reactive metabolite, which causes protein modification. The extracted protein from the treated BN rats matched 10% of keratin, which implies that keratin was the protein targeted by the NVP-ALK. / Résumé : Les effets indésirables (EI) sont les effets indésirables causés après l'administration d'une dose unique ou une administration prolongée du médicament ou le résultat de la combinaison de deux médicaments ou plus. La Réaction idiosyncratique (IDR) est une réaction indésirable qui ne se produit pas dans la plupart des patients traités avec un médicament et qui ne comporte pas l'effet thérapeutique du médicament. IDR sont imprévisibles et peuvent mettre la vie du malade en danger. Cette réaction dépend des caractéristiques chimiques du médicaments et/ou de la réponse immunitaire individuelle du patient. IDR est un problème majeur pour le développement de médicaments car ils ne sont généralement pas détectés au cours des essais cliniques. Dans cette étude, nous nous sommes concentrés sur la Réaction idiosyncratique de névirapine (NVP) qui est un inhibiteur de transcriptase inverse non nucléosidique utilisé pour le traitement du virus d'immunodéficience humaine (VIH). L'utilisation de NVP est limitée par une incidence relativement élevée d'éruption cutanée. NVP provoque également une éruption cutanée chez les rats femelles de souche Brown Norway. Notre étude vise à mieux comprendre les IDRs induites par l'administration de NVP chez l'animal. La présente étude vise à vérifier l'hypothèse que les problèmes cutanés associés à la prise de NVP soient attribuables à la modification post-traductionnelle de protéines détactable par spectrométrie de masse. Les principaux objectifs de ce projet étaient : 1) Déterminer si la Nevirapine alcynes (NVP-ALK), un analogue de la NVP peut développer la même éruption cutanée que la NVP. La NVP-ALK a été couplé avec de la biotine en utilisant la réaction chimique (click chemistry). 2) Détecter les modifications post-traductionelles des proteines par Western blot et des techniques de spectrométrie de masse, pour comprendre le mécanisme de la toxicité induite par la NVP. 3) Identifier les protéines modifiées en utilisant le moteur de recherche MASCOT pour l'identification des protéines, en comparant le les spectres de masse obtenus avec les spectres théoriques pour trouver une séquence correspondante de peptide. 4) Tester si la NVP et ses métabolites peuvent provoquer des effets nocifs, comme l'induction d'un stress oxydatif dans les cellules (par la mesure de la glutathionylation des protéines). Les résultats ont montré que la névirapine est métabolisé en métabolite réactif ce qui provoque une modification de la kératine. Ainsi nos résultats suggèrent que la kératine est la cible des métabolites de la NVP-ALK.
203

Studies of Platinum Polyynyl Complexes: Elaboration of Novel "Click" Cycloadducts and Fluorous and Polygon Based Platinum Polyyndiyl Systems

Clough, Melissa Catherine 1985- 14 March 2013 (has links)
The major directions of this dissertation involve (1) the syntheses and characterization of molecular polygons incorporating sp1hybridized carbon linkers and L2Pt corners (L2 = cis-1,3-diphosphine), (2) the development of protected carbon chain complexes featuring fluorous phosphine ligands and (3) click reactions of metal terminal polyynyl complexes and further metallations of the resulting triazole rings. A brief overview is provided in Chapter I. Chapter II details the syntheses of molecular squares containing bidendate diphosphine ligands of the formula R2C(CH2PPh2)2 where R = Me, Et, n-Bu, n-Dec, Bn, and p-tolCH2 (general designation dppp*), in which the R2 groups are intended to circumvent the solubility issues encountered by others. Their syntheses involve double substitutions of the dimesylate compounds R2C(CH2OMs)2 using KPPh2. Building blocks of the formulae (dppp*)PtCl2 and (dppp*)Pt((C≡C)2H)2 are synthesized and characterized, including one crystal structure of the latter. The target complexes are accessed by reactions of (dppp*)PtCl2 with (dppp*)Pt((C≡C)2H)2 under Sonogashira type conditions. Six new squares of the formula [(R2C(CH2PPh2)2)Pt(C≡C)2]4 are characterized including two crystal structures. Further topics include approaches to higher homologues and cyclocarbon synthesis. Chapter III focuses on carbon chain complexes bearing fluorous phosphine ligands of the formula P((CH2)mRfn)3 (Rfn = (CF2)n-1CF3; m/n = 2/8, 3/8, and 3/10). Precursors of the formula trans-(C6F5)((Rfn(CH2)m)3P)2PtCl are synthesized and characterized, including one crystal structure, which reveals phase separation of the fluorous and non-fluorous domains. Reactions with butadiyne give trans-(C6F5)((Rfn(CH2)m)3P)2Pt(C≡C)2H. Oxidative homocouplings afford the target complexes trans,trans-(C6F5)((Rfn(CH2)m)3P)2Pt(C≡C)4(C6F5)(P((CH2)mRfn)3)2Pt. Cyclic voltammetry indicates irreversible oxidations of the title compounds, in contrast to partially reversible oxidations of non-fluorous analogues. Chapter IV focuses on multimetallic complexes achieved by click reactions in metal coordination spheres. The copper catalyzed click reaction between trans-(C6F5)(p-tol3P)2Pt(C≡C)2H (1) and (η5-C5H4N3)Re(CO)3 affords the bimetallic 1,2,3-triazole trans-C6F5)(p1tol3P)2PtC≡CC=CHN((η51C5H4)Re(CO)3)N=N. Further reactions with Re(CO)5OTf and Re(CO)5Br give trimetallated adducts, which represent the first species of this type. An alternative route to a trimetallic complex involves the twofold cycloaddition of the diazide (η5-C5H4N3)2Fe and 1, giving (η5-C5H4NN=N-C(trans-(C≡C)Pt(Pp-tol3)2(C6F5)=CH)2Fe. The crystal structures of the di and trimetallic complexes are compared, but attempts to achieve a fourth metallation involving the =CH groups are unsuccessful. However, when the triazolium salt [trans-(C6F5)(p-tol3P)2PtC≡CC=CHN(CH2C6H5)N=N(Me)]+ I– is treated with Ag2O and [Rh(COD)Cl]2, a =CRh adduct is obtained. The success of =CH metallation is correlated to the 1H NMR chemical shift, indicative of an electronic effect.
204

Nouveaux dendrigrafts de poly-L-lysine (DGL) fonctionnalisés : vers des architectures de type "Janus" / Novel functional poly-L-lysine dendrigrafts (DGL) : toward "Janus" architectures

Liu, Tao 18 December 2012 (has links)
Les dendrimères de type Janus (à deux faces) prennent une importance croissante du fait de leurs applications thérapeutiques ou diagnostiques potentielles, mais demandent des synthèses multi-étapes laborieuses. Les dendrigrafts de poly-L-Lysine (DGL) récemment découverts proposent une alternative "à faible coût" aux dendrimères. Ces DGL sont préparés par cycles successifs de polycondensation d'un N-carboxyanhydride (Lys(Tfa)NCA) dans l'eau suivie de la déprotection des chaînes latérales. Le spectre d'applications des DGL déjà identifiées s'élargira nettement si l'on parvient à construire des architectures DGL de type "Janus", ce qui requiert de fonctionnaliser le DGL (avec des groupes "clickables") de façon contrôlée, tant au cœur qu'en périphérie.Le chapitre I est une synthèse bibliographique qui montre les principales différences entre dendrimères et dendrigrafts, et qui résume l'état de l'art du domaine en ce qui concerne les matériaux à base de lysine.Le chapitre II étudie la fonctionnalisation périphérique du DGL par la chimie Click-Huisgen (CuAAC), et met en avant l'électrophorèse capillaire (EC) et l'analyse de la dispersion de Taylor (TDA), qui sont des outils efficaces pour caractériser le degré de fonctionnalisation du DGL, en montrant que celle-ci est homogène et régulière.Le Chapitre III est consacré à la synthèse et caractérisation de DGL fonctionnalisés à cœur (par un bras PEG portant un azoture terminal "clickable"), obtenus en modifiant la synthèse des DGL natifs, en particulier via l'amorçage de la condensation de NCA par une amine fonctionnelle. L'accessibilité de la fonction à cœur a été étudiée par réaction Click avec un chromophore, et par des tests de reconnaissance immunochimique en compétition.Enfin le chapitre IV résume notre stratégie de synthèse vers des DGL de type Janus (à deux face) et présente des résultats préliminaires qui valident le concept, avec comme perspective plus lointaine un accès éventuel à des DGL "Janus" à trois faces. / "Janus"-like (double-faced) dendrimers gain increasing attention for their high potential of therapeutic or diagnostic applications, however involving tedious, multistep synthesis. Recently discovered poly-L-lysine dendrigrafts (DGL), prepared through the alternation of N-carboxyanhydride (Lys(Tfa)-NCA) polycondensation in aqueous medium with deprotection of side chain amines, constitute promising "low-cost" equivalents of dendrimers. The already identified spectrum of DGL applications will benefit from an easy access to "Janus"-like DGL architectures, what requires controlled functionalisation (suitable for further click chemistry) of both core and periphery of DGLs.The chapter I is a bibliographic survey of the topic, highlighting the main differences between dendrigrafts and dendrimers, and summarising the state-of the-art about lysine-based materials in both domains.The chapter II investigates the surface functionalisation of DGL by Huisgen Click chemistry (CuAAC), and promotes capillary electrophoresis (CE) and Taylor Dispersion Analysis (TDA) as efficient analytic tools for characterising the functionalisation extent of DGL, thus proving the regularity and homogeneity of surface functionalisation.The chapter III is devoted to the synthesis and characterisation of core-functionalised DGL (bearing a PEG2–4 spacer with a clickable azido endgroup), through a modification of the "native" DGL synthetic route, involving initiation of NCA polycondensation in water by a functional amine. The DGL core group accessibility was assessed by click coupling with a chromophore group, and by immunochemical competition assays, concluding that a sufficiently long PEG linker ensures good core group accessibility.The chapter IV outlines the synthetic route toward double faced Janus DGL and presents preliminary results as a proof of the concept. Further, this synthetic strategy might potentially be extended to three-faced Janus DGL.
205

Élaboration de nouveaux biopolyesters bactériens fonctionnalisés pour des applications dans le domaine biomédical / élaboration of new functionalized bacterial biopolyesters for biomedical applications

Lemechko, Pierre 13 July 2012 (has links)
Les poly(3-hydroxyalcanoate)s ou PHAs sont des biopolyesters linéaires biodégradables et biocompatibles synthétisés par des microorganismes bactériens en tant que réserve de carbone et d'énergie. Ils sont synthétisés par des bactéries à partir de ressources renouvelables et la diversité de leurs structures possibles se traduit par un large éventail de polymères ayant des propriétés mécaniques très différentes. Nous avons tout d'abord testé les capacités de production de PHAs de nouvelles souches bactériennes marines provenant de tapis microbiens de Polynésie française, en utilisant, entre autres, des substrats naturels comme l'huile de coprah, le glucose et l'acide oléique. Nous avons notamment montré que la souche Pseudomonas guezennei est capable de produire des PHAs avec des taux d'insaturation contrôlés et de masse molaire très élevée. Puis, des oligomères de PHAs fonctionnalisés de structures contrôlées portant des fonctions terminales alcynes ou alcènes ont été préparés par transestérification. Ces oligomères ont ensuite été utilisés pour l'élaboration par chimie click de copolymères amphiphiles greffés EPS-g-PHA avec des exopolysaccharides (EPS) bactériens. Enfin la dernière partie de ces travaux a consisté en la réalisation d'un support de croissance pour le développement de cellules souches pour l'ingénierie tissulaire combinant les propriétés mécaniques des PHAs et les propriétés hydrophiles et bioactives des EPS / Poly(3-hydroxyalkanoate)s, or PHAs, are linear biodegradable and biocompatible biopolyesters synthesized by bacterial microorganisms as energy and carbon supply. They are synthesized by bacteria from renewable resources and the diversity of the achievable structures leads to a large range of mechanical properties. First, we studied the PHAs production ability of several new marine bacteria strains, isolated from microbial mats from French Polynesia, using, among others, natural substrates such as coprah oil, glucose and oleic acid. We showed particularly that the strain Pseudomonas guezennei was able to produce PHAs with controlled amounts of insaturations and high molar masses. Then, we prepared functionalized PHAs oligomers with controlled structure and bearing a terminal alkyne or alkene function. Following that, these oligomers were used to elaborate amphiphilic by click chemistry graft copolymers EPS-g-PHA with bacterial exopolysaccharide (EPS). Finally, the last part of this work was the making of a scaffold for stem cell culture for tissue engineering which combined the mechanical properties of PHAs and the hydrophilicity and bioactive properties of EPS
206

Nanoparticules polymères de deuxième et troisième générations pour des applications thérapeutiques anti-cancer et anti-HIV / Second and third generation of polymeric nanoparticles for therapeutical applications anti-cancer and anti-HIV

Laville, Maxime 22 February 2013 (has links)
Les travaux portent sur l'élaboration de nanoparticules dont le coeur polyester (PLA) est recouvert d'une couche polysaccharide hydrophile à base de dextrane. Des composés amphiphiles polysaccharidiques (DexC6, DexN3, Dex-g-PLA-g-N3) ont été synthétisés et leur comportement tensioactif a été évalué. Cette capacité à stabiliser les interfaces a été mise à contribution pour élaborer les nanoparticules via deux procédés: émulsion/évaporation de solvant organique et nanoprécipitation. Un peptide inhibiteur de la dimérisation de la protéase du VIH-1 (Pam-LEY), a alors été encapsulé au sein de nanoparticules PLA recouvertes de DexC6. Bien que stable en milieu aqueux de haute force ionique (4M), la désorption de la couronne physiquement adsorbée est observée en présence de SDS. La Chimie-click a été une alternative pour fixer cette couronne polysaccharidique hydrophile de façon irréversible à la surface des nanoparticules selon 2 stratégies. D'une part, des copolymères organosolubles Dex-g-PLA-g-N3 ont été présynthétisés par Chimie-click puis nanoprécipités dans l'eau. L'autre méthode consiste à émulsionner une solution aqueuse de DexN3 et une solution organique de PLA alpha-alcyne en présence de CuBr. Une chimie-click se produit alors in situ à l'interface liquide/liquide, et assure le lien covalent entre le coeur et la couronne de la nanoparticule. La Chimie-click nous a également permis d'obtenir des nanoparticules possédant des fonctions azide résiduelles à leur surface. Une post-fonctionnalisation de ces dernières à été réalisée avec un dérivé d'ATWLPPR, un peptide ciblant les co-récepteurs NRP-1 de VEGF surexprimés au niveau des néo-vaissaux irriguant les tumeurs cancéreuses / This work deals with biodegradable/biocompatible polymeric nanoparticles based on PLA and covered by a polysccharidic shell (dextran). First of all, amphiphilic dextran derivatives (DexC6, DexN3, Dex-g-PLA-g-N3) have been produced and their surfactive properties have been evaluated depending on their architecture and substitution degree. Then we took advantages of their ability to stabilize interfaces to formulate nanoparticles via two processes: emulsion/organic solvent evaporation and nanoprecipitation. Pam-LEY, peptide used as HIV-1 protease dimerisation inhibitor, was encapsulated with 40% efficiency into PLA nanoparticules covered by DexC6. Because this DexC6 surface is just physically adsorbed on the PLA core, a desorption is observed in presence of SDS. The use of Click-chemistry was judged interesting to solve that issue and to covalently link the hydrophilic polysaccharidic shell to the PLA core. Two strategies could be opposed. One one hand, oil-soluble Dex-g-PLA-g-N3 copolymers have been synthesized by click chemistry in homogeneous media and then nanoprecipitated in water. On other hand, an hydrophilic DexN3 has been emulsified with a alpha-alkyne PLA organic solution, in the presence of CuBr. By this way, click-chemistry occured in situ, at liquid/liquid interface during the emulsification step. Produced triazole rings link the core to the shell.Moreover, the use of the Huisgen cycloaddition reaction allowed us to produce nanoparticles having some residual azide functions on their surface. The nanoparticles have been post-fonctionnalized by a peptide used to target NRP-1, co-receptor of Vascular Endothelial Growth Factor over-exprimed on the cancer tumors area
207

PEGylated cationic polyacrylates for transfection : synthesis, characterization, DNA complexation and cytotoxicity / Polyacrylate cationiques PEGylés pour la transfection : synthèse, caractérisation, complexation avec l'ADN et cytotoxicité

Le Bohec, Maël 30 October 2017 (has links)
Le développement de la thérapie génique dépend des systèmes utilisés pour le transport de gènes vers les cellules eucaryotes. Les systèmes à base de virus sont les plus efficaces. Cependant, il est urgent de trouver une alternative à de tels systèmes viraux pathogènes et oncogènes. Les polymères cationiques sont des vecteurs synthétiques prometteurs ; toutefois, une question cruciale reste en suspens : quelle structure de polymère cationique visée pour une efficacité de transfection élevée et une faible cytotoxicité ? Face à ce questionnement scientifique, de nouveaux polymères cationiques offrant une grande flexibilité en termes de structure et de fonctionnalité sont développés dans cette thèse. Les différents paramètres structuraux pertinents étudiés sont : (i) des entités amines primaire et tertiaire pH-sensibles pour la complexation de l'ADN et pour la libération des polyplexes ADN/polymère, (ii) un groupe alcyne destiné à l’ancragepar chimie click de ligands capables de viser des récepteurs spécifiques de membrane cellulaire pour une reconnaissance efficace des cellules, (iii) des entités polyacrylates à « charge modulable » pour libérer l'ADN et diminuer la cytotoxicité du polymère et (iv) un poly (oxyde d'éthylène) (PEGylation) pour une meilleure stabilité en milieu physiologique et une meilleure biocompatibilté. / The clinical success of gene therapy is really dependent on the development of new efficient gene transfer systems. Viral-based gene transfer systems are remarkably efficient in transfecting body cells. However, viral-based systems raised some concerns in terms of immunogenicity, pathogenicity, and oncogenicity. Cationic polymers are promising candidates as they show low host immunogenicity, are cheaper and easier to produce in a large scale than viral ones. However, a crucial question is still pending: which cationic polymer structures and functionalities give the highest transfection efficiency and the lowest cytotoxicity? In dealing with this scientific issue, new cationic polymers with key structural parameters and functionalities were developped during this PhD thesis. The key structural features studied are : (i) pH sensitive primary and tertiary amine entities for DNA complexation and to ensure the endosomal escape, (ii) an alkyne group to attach ligands capable to target specific cell membrane receptors for an efficient cell recognition and receptor-mediated cellularuptake, (iii) “charge-shifting” amino-based polyacrylates for DNA release and to decrease cytotoxicity and (iv) PEG chains (PEGylation) to achieve high stability, longer circulation in physiological conditions and a better biocompatibility. The synthesis of such multi-structural cationic polymers has been achieved through the combination of RAFT polymerization and thiol-yne click coupling reaction. The structure/complexation and the structure/cells viability relationships have been investigated during this work.
208

Funcionalização de eletrodos via redução eletroquímica de derivado de arildiazônio-4,4-bipiridina e sua aplicação na construção de um biossensor de lactose baseado na imobilização / Functionalization of electrodes by electrochemical reduction of aryldiazonium-4,4\'-bipyridine derivative and its application for the construction of a lactose biosensor based on the immobilization of Galectin-1 fused to Maltose Binding Protein (MBP-Gal-1)

Gomes, Miquéias Ferreira 08 March 2019 (has links)
A proteína de ligação a maltose (MBP) é amplamente conhecida na literatura como um marcador para métodos de purificação de afinidade e é freqüentemente fusionada a proteínas relevantes para melhorar seu rendimento, facilitando sua purificação e aumentando sua estabilidade e solubilidade. Por outro lado, foi relatado que o nitrogênio piridínico não quaternizado do filme eletropolimerizado com N-(3-pirrol-1-ilpropil)-4,4\'-bipiridínio (PPB) desempenhou um papel importante na imobilização da proteína de ligação da maltose (MBP). Neste trabalho relatamos a modificação do eletrodo de carbono vítreo (CV) pela redução eletroquímica do derivado de arildiazônio piridínico gerado in situ e seu uso na imobilização da proteína MBP fusionada à galectina-1 (MBP-Gal-1). Resultados de voltametria cíclica mostraram formação de monocamadas com carga positiva sobre CV e que o nitrogênio não quaternizado da piridina estava disponível após a modificação. Os resultados da Espectroscopia de Capacitância Eletroquímica (ECC) indicaram que o domínio do MBP foi importante para a interação do eletrodo modificado. O tempo de imobilização e a concentração de proteína fusionada também foram relevantes para a cinética e os resultados sugeriram uma saturação em 40 minutos de interação, utilizando 5 mol L-1 de MBP-Gal-1. Experimentos de detecção de lactose indicaram que a atividade da galectina-1 foi preservada após a imobilização. A reação click realizada para promover a inclusão da maltose na superfície desse eletrodo modificado gerou resultados significativamente melhores quando comparados aos do eletrodo sem a maltose ligada em sua superfície: a proteína fusionada MBP-Gal-1 demonstrou um aumento de 62% na imobilização. Também foram observados aumentos na sensibilidade para detecção de lactose (72%) e na especificidade de interação com este mesmo carboidrato (77%) / Maltose Binding Protein (MBP) is widely known in the literature as a tag for affinity purification methods and it is often fused to relevant proteins to improve its yield, facilitating its purification and enhance its stability and solubility. On the other hand, it was reported that the nonquaternized pyridine nitrogen from N-(3-pyrrol-1-ylpropyl)-4,4-bipyridinium electropolymerized film (PPB) played an important role for the immobilization of maltose binding protein (MBP). In this work we reported the glassy carbon electrode (GCE) modification by electrochemical reduction of pyridinium diazonium salt derivative generated in situ and its use on MBP fused to Galectin-1 protein (MBP-Gal-1) immobilization. Cyclic voltammetry results showed a positively charged monolayer formation onto GCE and that nonquaternized pyridine nitrogen was available after modification. Electrochemical Capacitance Spectroscopy (ECS) results indicated that the MBP domain was important for the modified electrode interaction. Immobilization time and the fused protein concentration were also relevant to the kinetics and the results suggested a monolayer saturation in 40 minutes of interaction, using 5 mol L-1 MBP-Gal-1. The click reaction performed to promote the inclusion of maltose on the surface of this modified electrode generated better results when compared to those of the electrode without maltose bounded to its surface: the MBP-Gal-1 fused protein demonstrated a 62% increase in immobilization. Increases in sensitivity for lactose detection (72%) and specificity of interaction with this same carbohydrate (77%) were also observed
209

Shiga toxin targeted strategy for chemotherapy and cancer immunotherapy application using copper-free « Click » chemistry

Kostova, Vesela 27 November 2015 (has links)
Pas de résumé / Recently targeted therapies appeared as attractive alternatives to classical antitumoral treatments. The approach, developed on the concept of targeting drug to cancer cells, aims to spear normal tissues and decrease the side effects. This doctoral dissertation focuses on developing new anticancer targeted treatments in the field of chemotherapy and cancer immunotherapy by exploiting an original targeting moiety, the B subunit of Shiga toxin (STxB). Its specific properties, such as, recognition with its receptor Gb3 overexpressed in cancer cells or in antigen-presenting cells, its unconventional intracellular trafficking, guided the choice of this protein as targeting carrier. This project is based in the use of copper-free Huisgen [3+2] cycloaddition as a coupling method, which led to successful preparation of various conjugates for their respective applications. The concept was first validated by STxB-biotin conjugate. The high yield of the reaction and the compatibility between the targeting carrier and the chemical ligation promoted the design of conjugates for chemotherapy and immunotherapy. Two therapeutical optimizations of previously developed strategy in STxB drug targeting delivery were investigated: synthesis of multivalent drug-conjugates and synthesis of conjugates containing a highly potent anticancer agent. Both approaches exploited three anticancer agents: SN38, Doxorubicin and Monomethyl auristatin F. The disulfide spacer, combined with various self-immolative systems, insured drug release. Two cytotoxic conjugates STxB–doxorubicin (STxB-Doxo) and STxB-monomethyl auristatin F (STxB-MMAF) were obtained in very high yield and demonstrated strong tumor inhibition activity in the nanomolar range on Gb3-positive cells. Based on the results the STxB-MMAF conjugate was investigated on a mouse model. The project aimed also to develop STxB bioconjugates for vaccine applications. Previous studies used B subunit as a targeting carrier coupled to an antigenic protein in order to induce a more potent immune response against cancer. The conjugates were prepared using a commercial linker, requiring modifying the antigen at first place, or by oxime ligation, where slightly acidic conditions promoted the coupling. Thus, the work presented herein proposed an alternative ligation via copper-free click chemistry especially for more sensitive antigenic proteins. Various types of conjugates were synthesised and investigated for their immune stimulation properties. The STxB targeting strategy was also applied to the development of a new vaccine based on coupling the targeting carrier to alpha-GalCer, one of the most potent immune stimulating agents known. The work focused on the synthesis of functionalised alpha-Galcer with an azide handle.
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Recherche de nouvelles réactions de couplage par criblage immuno-enzymatique / Discovery of coupling reactions using an immunoassay screening

Kolodych, Sergii 12 September 2013 (has links)
La recherche de nouvelles réactions est un des enjeux fondamentaux de la chimie organique. En dehors de l’approche classique basée sur la conception d’une réaction en s’appuyant sur les propriétés chimiques des substrats, une nouvelle approche utilisant le criblage systématique de combinaisons aléatoires de fonctions réactives a été récemment adoptée par plusieurs groupes. Cette stratégie nécessite un outil analytique permettant de cribler un très grand nombre de réactions par jour et d’identifier les meilleures combinaisons conduisant à la formation de produits intéressants. Les travaux de thèse présentés dans ce mémoire s’inscrivent dans le contexte de l’utilisation des techniques de dosages immuno-enzymatiques (ELISA) comme outil de criblage pour la recherche de nouvelles réactions de couplage. Dans un premier temps le criblage de 2688 combinaisons de fonctions réactives et de catalyseurs choisies au hasard a été effectué. Ce criblage a permit de mettre en évidence deux nouveaux couplages en présence de sels de cuivre : une réaction entre les thiourées et les phénols conduisant à la formation des isourées et une réaction entre les N-hydroxythiourées et les alcynes conduisant à la formation des thiazole-2-imines. Dans un second temps le criblage de 2816 combinaisons de fonctions sélectionnées, cette fois-ci, de façon rationnelle a été effectué. Ce criblage a visé la découverte de nouvelles cycloadditions [3+2] répondant aux critères de la chimie « click ». Ainsi l’utilisation de dosage immuno-enzymatique a été étendue à l’optimisation des nouvelles réactions découvertes ainsi qu’à l’évaluation de leurs cinétique, chimiosélectivité et biocompatibilité. Près de 3000 tests complémentaires effectuées sur les « hits » issus du criblage primaire ont ainsi permit de mettre en évidence 4 nouvelles réactions de couplage dont une nouvelle réaction « click » : la cycloaddition sydnone-alcyne catalysée au cuivre (CuSAC). Dans la dernière partie de ce manuscrit les études plus détaillées sur la réaction CuSAC ont été effectuées, notamment l’identification de la structure du produit de couplage et l’étendue du champ d’application de cette réaction. Enfin, l’aspect « click » de la réaction CuSAC a été illustré par l’application de cette réaction au marquage d’une protéine. / Discovery of new reactions is one of the fundamental goals in organic chemistry. In addition to the traditional approach to reaction discovery, consisting in designing a reaction on the basis of known chemical properties of reagents, new approaches based on the screening of random combinations of reactive functions and catalysts have been recently developed. The main prerequisite of this strategy is an analytical tool allowing screening of a big number of reactions per day and identifying combinations leading to the formation of unanticipated products. In the work presented herein a high-throughput immunoassay screening has been used for the discovery of new coupling reactions. In the first part of this work a screening of 2688 combinations of randomly chosen reactive functions and catalysts was carried out. This screening led to the discovery of two copper-promoted coupling reactions: a reaction between thioureas and phenols leading to the formation of isoureas through desulfurization; and a reaction between N-hydroxythioureas and alkynes leading to the formation of thiazole-2-imines. In the second part of the work a screening of 2816 combinations of rationally designed chemical functions and catalysts was carried out. This screening was focused on the discovery of catalytic [3+2] cycloadditions that comply with the standards of “click” chemistry. In this study, the use of immunoassay screening was extended to optimize new reactions and to evaluate their kinetics, chemoselectivity and biocompatibility. Therefore, around 3000 complementary tests were carried out on the hits, identified in the primary screening. This allowed the discovery of 3 new coupling reactions and one new “click” reaction: a copper-catalyzed sydnone-alkyne cycloaddition (CuSAC). The last part of the work was focused on detailed studies of the CuSAC reaction. Identification of the structure of the coupling product and substrate scope of this reaction was carried out. Finally, the applicability of the CuSAC reaction for bioconjugation was demonstrated by an example of protein labeling.

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