Gαq signaling is implicated in a number of physiological processes that include platelet activation, cardiovascular development and smooth muscle function. Historically, Gαq is known to function by activating its effector, phospholipase Cβ. Desensitization of Gαq signaling is mediated by G-protein coupled receptor kinases (GRK) such as GRK2 that phosphorylates the activated receptor and also sequesters activated Gαq and Gβγ subunits. Our crystal structure of Gαq-GRK2-Gβγ complex shows that Gαq forms effector-like interactions with the regulator of G-protein signaling (RGS) homology domain of GRK2 involving the classic effector-binding site of Gα subunits, raising the question if GRK2 can itself be a Gáq effector and initiate its own signaling cascade. In the structure, Gα and Gβγ subunits are completely dissociated from one another and the orientation of activated Gαq with respect to the predicted cell membrane is drastically different from its position in the inactive Gαβγ heterotrimer. Recent studies have identified a novel Gαq effector, p63RhoGEF that activates RhoA. Our crystal structure of the Gαq-p63RhoGEF-RhoA complex reveals that Gαq interacts with both the Dbl homology (DH) and pleckstrin homology (PH) domains of p63RhoGEF with its C-terminal helix and its effector-binding site, respectively. The structure predicts that Gαq relieves auto-inhibition of the catalytic DH domain by the PH domain. We show that Gαq activates p63RhoGEF-related family members, Trio and Kalirin, revealing several conduits by which RhoA is activated in response to Gq-coupled receptors. The Gαq effector-site interaction with p63RhoGEF/GRK2 does not overlap with the Gαq-binding site of RGS2/RGS4 that function as GTPase activating proteins (GAPs). This suggests that activated G proteins, effectors, RGS proteins, and activated receptors can form high-order complexes at the cell membrane. We confirmed the formation of RGS-Gαq-effector complexes and our results suggest that signaling pathways initiated by GRK2 and p63RhoGEF are regulated by RGS proteins via both allosteric and GAP mechanisms. Our structural studies of Gαq signaling provide insight into protein-protein interactions that induce profound physiological changes. Understanding such protein interfaces is a key step towards structure-based drug design that can be targeted to treat diseases concerned with impaired Gαq signaling. / text

In this thesis, a 4.7Å crystal structure of the human mitochondria DNA polymerase γ catalytic complex is reported. Though the DNA substrate-binding site is not identifiable in the structure, two conformational changes in the enzyme architecture are described: 1) rotation of the distal monomer of the accessory subunit towards the catalytic subunit, and 2) shift of the thumb motif of the polymerase domain towards the active site. Both conformational changes suggest a structure of Pol γ in the DNA-bound state and in its active site “closed” conformation. / text

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The innate immune pathways that stimulate the expression of cytokines and proapoptotic factors in response to infection are triggered by the activation of the cytosolic receptors retinoic acid-inducible gene I (RIG-I) and melanoma differentiationassociated gene 5 (MDA5). Activation of both receptors occurs as a result of binding to RNA. MDA5 only recognizes double stranded forms of RNA, whereas RIG-I is capable of recognizing both single and double stranded RNA. In vivo, MDA5 is known to be stimulated by long (>1 kb) strands of RNA, forming filaments along the phosphate backbone. However, the manner in which MDA5 can recognize the terminal end of its RNA ligand is uncertain. I have examined the mechanism of binding of the MDA5 protein by comparing MDA5 binding to short (<18 bp) blunt RNA, 5’ triphosphate RNA, and RNA with a 3’ or 5’ overhang. It is shown that while the MDA5 protein regulatory domain (RD) is essential for RNA recognition, the MDA5 RD only weakly recognizes short double stranded RNA ligands with overhangs or a 5’ triphosphate group. The Cys951 residue was shown to disrupt stability of the MDA5 RD-RNA complex. Binding analyses were performed using a combination of SDS-PAGE, gel filtration analysis, and nondenaturing gel electrophoresis. In addition, structural data was gathered by crystallization of the MDA5 RD-RNA complex using X-ray crystallography. These results help to establish the manner in which MDA5 is regulated predominantly to the binding of long RNA ligands. Also included in this document is structural data on the dimer form of the PepQ protein from E. coli. PepQ is a highly conserved proline peptidase that has a secondary activity of hydrolyzing organophosphorus triesters, toxic compounds found in many pesticides. The PepQ protein was crystallized and analyzed by X-ray diffraction. The dimer interface was clearly defined within the structure and provides insight into how the active dimer forms from the PepQ monomer.

Novel open-framework germanates and vanadoborates, which are constructed from typical types of clusters, have been synthesized based on different strategies. The crystal structures are solved by using single crystal X-ray diffraction (SXRD) technique or by combined techniques. Additionally, the structures of two open-framework materials, PKU-3 and PKU-16, are determined from nano-sized crystals by rotation electron diffraction (RED) combined with powder X-ray diffraction (PXRD). This thesis serves as an introduction to synthesis of open-framework germanates and vanadoborates based on different design strategies. Two germanates are obtained; SU-74 is achieved by employing a novel structure directing agent (SDA), SUT-8 is achieved by assembling the novel structure building units (SBUs) of Co@Ge14 with the introduction of cobalt ions in the synthesis. Four strategies are successfully used in construction of open-framework vanadoborates: using metal-oxo polyhedra as the linkages in SUT-6; applying the scale chemistry approach in SUT-7; employing metal-organic complexes as the linkages in SUT-12, SUT-13, SUT-14; and introducing covalent bond organic linkages into SUT-10 and SUT-11. Single crystal X-ray diffraction is used to conduct the structure determination in combination with other techniques. Furthermore, the structures of two open-framework materials, an aluminoborate PKU-3 and a germanosilicate PKU-16, are solved from nano-sized crystals using RED data. The structures are further confirmed by Rietveld refinement against PXRD data. The advantages of the RED techniques are demonstrated in two aspects. In PKU-3, the presence of seriously preferred orientation and light elements in the structure makes it difficult for structure determination by PXRD, but it is easier by RED. In PKU-16, the RED technique is used to determine its structure from the as-synthesized multi-phasic sample containing nano-sized crystals. After the structure of PKU-16 has been solved, the synthesis of this interesting phase can be optimized and pure PKU-16 can be obtained. Keywords: Open-framework, germanates, vanadoborates, aluminoborates, germanosilicates, crystal structure, hydrothermal synthesis, single crystal X-ray diffraction, rotation electron diffraction, powder X-ray diffraction

The objective of this work is the synthesis of model material for manganese dioxygenase which is an enzyme that oxidizes catechol-like substrates with dioxygen. Our strategy comprises three main steps that form the different chapters of this thesis: - Synthesis and characterization of manganese(II) complexes with tridentate ligands. - Optimization of a microwave-assisted synthesis of a mesoporous silica. - Functionalization of these materials and complex grafting, as well as preliminary catalytic tests. The ligands used are tertiary amines containing an alkyne arm and two coordinating arms with functions such as pyridine, imidazole or carboxylate. The complexes were crystallized and/or characterized by IR, EPR, SQUID and cyclic voltamperometry. Microwave synthesis, based on the conditions of classical hydrothermal synthesis, allowed us to reduce the synthesis time from one day to two hours. The quality of these new materials was verified by IR, TGA, BET and powder XRD. These materials are then bi-functionalized using a molecular stencil patterning mehod with a an azide function for complex grafting via click chemistry and a function pyridine or trimethylsilyl to control the coordinating ability of the metal environment. These complexes and materials are active in catechol oxidation with O2.

The new phases Ca3Pt4+xGe13−y (x = 0.1; y = 0.4; space group I213; a = 18.0578(1) Å; RI = 0.063; RP = 0.083) and Yb3Pt4Ge13 (space group P42cm; a = 12.7479(1) Å; c = 9.0009(1) Å; RI = 0.061, RP = 0.117) are obtained by high-pressure, high-temperature synthesis and crystallize in new distortion variants of the Pr3Rh4Sn13 type. Yb3Pt4Ge13 features Yb in a temperature-independent non-magnetic 4f14 (Yb2+) configuration validated by X-ray absorption spectra and resonant inelastic X-ray scattering data. Ca3Pt4+xGe13−y is diamagnetic (χ0 = −5.05 × 10−6 emu mol−1). The Sommerfeld coefficient γ = 4.4 mJ mol−1 K−2 for Ca3Pt4+xGe13−y, indicates metallic properties with a low density of states at the Fermi level in good agreement with electronic structure calculation (N(EF) = 3.3 eV−1/f.u.)); the Debye temperature (θD) is 398 K. / Dieser Beitrag ist mit Zustimmung des Rechteinhabers aufgrund einer (DFG-geförderten) Allianz- bzw. Nationallizenz frei zugänglich.

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Demands for new, energy-efficient appliances have greatly increased in response to our growing need for a more environmentally friendly society. Magnetic refrigeration is a technique that utilizes the magnetocaloric effect, with possible energy savings of up to 30% compared to commercial gas compression refrigerators. A material appropriate for commercial magnetocaloric devices should be both cheap and non-toxic; it should also exhibit a first-order magnetic transitions close to room temperature. The magnetic properties of Fe2P-related materials can be relevant in this context, since their magnetic properties can be finely tuned through the substitution of Fe by Mn and P by Si, As, Ge or B to meet the general requirements for a magnetocaloric device. An in-depth study has therefore here been made of the structural and magnetic properties of the (Fe,Mn)2(P,Si)-system. The phase diagram of the FeMnP1-xSix-system has been carefully re-examined. It is found to contain two single-phase regions: an orthorhombic Co2P-type structure (x &lt; 0.15) and a hexagonal Fe2P-type structure (0.24 ≤ x &lt; 0.50). Selected compounds within the Fe2P-type region of the phase diagram have been shown to exhibit potential for use in magnetic refrigeration applications. Neutron powder diffraction has here been used to determine the magnetic structures of selected crystalline compositions within the FeMnP1-xSix-system to gain a better understanding of its magnetic properties. The Fe2P-type region is mainly ferromagnetic, but an incommensurate antiferromagnetic structure has also been identified close to the Co2P/Fe2P-type phase border for x ≈ 0.25. The so-called ''virgin effect'' in the Fe2P-type region of the FeMn(P,Si) phase diagram is found to be accompanied by an irreversible structural phase transition induced by magnetostriction. This new phase is found to be preserved during successive cooling-heating cycles. Furthermore, the magnetic properties of the substituted Fe2P-type structure changes significantly for metal:non-metal ratios away from 2:1. Such deviations could well explain the apparently conflicting structure-property relationships described in earlier literature for the FeMnP1-xSix-system.

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