Made available in DSpace on 2015-04-22T22:16:08Z (GMT). No. of bitstreams: 1 Dissertacao Jose Mir Final.pdf: 1095442 bytes, checksum: bd21928f8f84d5235ab2e76eb5c5f0cb (MD5) Previous issue date: 2009-04-17 / FAPEAM - Fundação de Amparo à Pesquisa do Estado do Amazonas / The present work aims to evaluate some information criteria for the selection of models in the context of finite mixtures of skew-normal distributions. The analyzed criteria are the Akaike s Information Criterion - AIC, the Bayesian Information Criterion - BIC and the Efficient Detection Criterion - EDC. The evaluation concerning the performance presented by these criteria was obtained through a simulation study, on which the EM algorithm is required to find the maximum likelihood estimates of for the parameters of the model where the criteria are applied. It was also performed an experiment for the application of the theory developed, modeling a real data set previously analyzed in the specific literature. The results obtained point that, in an asymptotic sense, the three criteria tend to correctly evaluate the number of necessary components, but for small samples the AIC presents inferior performance than BIC or EDC. / Este trabalho tem por objetivo avaliar alguns critérios de informação para seleção de modelos no contexto de misturas finitas de normais assimétricas. Os critérios analisados foram o Critério de Informação de Akaike-AIC , Critério de Informação Bayesiano - BIC e Critério de Determinação Eficiente - EDC . A avaliação feita a respeito do desempenho apresentado por estes critérios se deu através de um estudo de simulação, em que utilizamos o algoritmo EM para encontrarmos as estimativas de máxima verossimilhança para os parâmetros do modelo com as quais empregamos os critérios. Foi também realizado uma aplicação da teoria desenvolvida para uma modelagem com dados reais utilizando dois conjuntos de dados já analisado anteriormente na literatura. Os resultados obtidos indicaram que, assintoticamente, os três critérios tendem a avaliar corretamente o número de componentes necessárias, mas para amostras pequenas o AIC apresenta desempenho inferior ao BIC e EDC, sendo que os dois últimos apresentam desempenho muito semelhante.

Dans le cadre des études visant à garantir l'intégrité de la gaine du crayon combustible, EDF est amené à caractériser la ductilité de la gaine après un Accident de Perte de Réfrigérant Primaire (APRP). La thèse porte sur la caractérisation du comportement à rupture des gaines en Zircaloy-4 détendu pour lesquels les conditions d'APRP ont été simulées en laboratoire par une oxydation à haute température suivie d'un refroidissement. L'oxydation est effectuée à 1100°C et à 1200°C pour différentes durées ce qui conduit à des niveaux d'oxydation de 3% à 30% d'ECR (Equivalent Cladding Reacted). Deux types de refroidissement sont mis en oeuvre : la trempe à l'eau et le refroidissement à l'air. Les gaines oxydées comportent deux couches fragiles, la couche de zircone externe ZrO2 et la couche α(O), et une couche présentant une ductilité résiduelle, la couche ex-β.Les gaines oxydées ont fait l'objet de caractérisations en microscope optique, par analyse à la microsonde et par nano-indentation. Une corrélation entre la teneur en oxygène et la nano-dureté et le module d'Young a été proposée.L'essai Expansion due à la Compression (EDC) a été développé avec une instrumentation par stéréo-corrélation d'images puis a été utilisé pour caractériser le comportement mécanique des gaines oxydées. Le comportement des gaines oxydées a été étudié à partir de l'analyse des courbes macroscopiques de l'essai EDC et à partir des observations des échantillons rompus ou pré-déformés.Un scénario de rupture des gaines oxydées a été proposé. Ce scénario a été validé d'une part par la réalisation d'essais sur gaines sablées ne comportant que la couche ex-β et d'autre part par la modélisation de l'essai par la méthode des éléments finis. Un critère de rupture des gaines oxydées a par ailleurs été établi. La modélisation du comportement et le critère de rupture proposés ont été validés par la modélisation des essais de compression d'anneau.

novel ozone-assisted aerobic sludge digestion process to stabilize and decrease the amount of excess sludge produced during biological treatment is presented in this study. Excess sludge production is a well known burden for the treatment plants both legally and financially. Moreover, with the arise in the knowledge in recalcitrant compounds it is understood that it can act as a significant secondary pollutant. With the developed pulse ozonation method, waste activated sludge samples from Ankara Tatlar and other Wastewater Treatment Plants (WWTP) were ozonated for different periods in Erlenmeyer flasks once a day on each of four consecutive days. Flasks were continuously aerated between ozone applications on an orbital shaker. The MLVSS, MLSS, COD and OUR parameters were measured routinely during the course of four days of digestion in order to optimize the process. Also pH, CST(capillary suction time) and SVI (sludge volume index) were followed. As a result MLVSS reductions of up to 95% were achieved with an ozone dose of only 0.0056 kg O3/kg-initial MLSS, at the end of the fourth day. In another experimental set, ozone dose was increased on the last day in order to destroy the selected endocrine disrupting compounds, namely diltiazem, carbamazepine, butyl benzyl phthalate and acetaminophen and two natural hormones estrone and progesterone, which accumulated onto the sludge. Over 99% removal of these contaminants were achieved on the fourth day. The analyses were conducted by using LC(ESI) MS/MS after solid phase extraction (SPE). By this process it became possible to save on contact time, as well as achieving a bio-solids digestion far exceeding the standard aerobic process at the expense of a minimum of ozone dose with the additional micropollutants removal. The developed process is deemed superior over side-stream ozonation of activated sludge in that it does not cause any reduction in active biomass amount that should be maintained in the aeration tank.

The diploma thesis deals with the preparation, crosslinking and characterization of collagen films from various animal sources. Collagen from pig, Tilapia, horse, cow and crocodile was used to prepare collagen films. Chemical crosslinking agents EDC/NHS and Lyofix were used to crosslink the prepared films. In the experimental part, differential scanning calorimetry (DSC) method was optimized to determine the denaturation temperature of individual collagen films before and after crosslinking. In addition, the ability of films to swell and degrade has been analyzed. The presence of characteristic groups present in the collagen structure was verified using infrared spectroscopy. The sample morphology was analyzed using Scanning Electron Cryomicroscopy (Cryo-SEM). The results show that EDC/NHS is a better collagen crosslinking agent compared to Lyofix. The best source for the preparation of thermally stable films is piggy collagen, whose denaturation temperature after crosslinking with EDC/NHS was about 69 °C and could represent more than adequate substitution for cow collagen, which is currently most used in the field of tissue engineering and food industry.

No description available.

Výborný, Karel. Vývoj materiálů na bázi extracelulární matrix pro léčbu centrálního nervového systému. [Development of extracellular-matrix scaffolds for CNS repair]. Praha, 2020. 105 stran, 3 přílohy. Dizertační práce (Ph.D.). Univerzita Karlova, 2. lékařská fakulta, Ústav experimentální medicíny, AV ČR v.v.i. Abstract Brain and spinal cord injury are a serious traumata and despite intensive research, there is still no effective treatment for patients. One of the studied approaches is to use various biomaterials to repair the damaged neural tissue. The aim of this thesis is to study the regenerative and neurotrophic effects of injectable extracellular matrix (ECM) hydrogels prepared by decellularization from porcine tissue (brain, spinal cord, bladder) and human umbilical cord (UC) in reconstruction of damaged neural tissue of the brain and spinal cord in rats. We characterized ECM hydrogels in terms of mechanical and rheological properties, structure and composition, cell adhesion, migration and proliferation. In a model of spinal cord hemisection, we compared the regenerative effect of ECM hydrogels derived from porcine spinal cord and urinary bladder. We found no benefits of tissue specific ECM prepared from the tissue of neural origin in terms of its neurotrophic properties in vitro or in vivo....

Endocrine-disrupting chemicals (EDCs) are known to cause endocrine disruption (ED), developmental neurotoxicity (DNT), infertility and impaired embryo development. EDCs do therefore impose a threat to humans, wildlife and the environment. The present study investigated the effects of the reference compounds dihydrotestosterone, estradiol, benzo(a)pyrene, rosiglitazone, as well as the EDCs bisphenol F and perfluorooctanesulfonic acid at various concentrations on zebrafish embryos. The scientific questions of the study were to investigate how these environmental pollutants impact the development of zebrafish, what their molecular mechanisms are and what the link between ED and DNT is. Zebrafish embryos were exposed for 5 days to the compounds and various parameters on development were collected at different time points. The expression of 41 genes (qPCR) related to ED and DNT, and the levels of 23 steroids (LC-MS/MS) were determined. Gene correlations were determined with Pearson’s correlation test and paired t-tests were used to determine significantly altered gene activities. The significant gene expression changes were further related to the pathways of steroids in order to connect how gene activity impacted steroid levels. Exposure to estradiol, dihydrotestosterone and bisphenol F induced cyp19a1b expression which can affect personality traits. Perfluorooctanesulfonic acid interferes with thyroid hormone transport by binding to TTR causing profound effects on neurodevelopmental processes and cognitive functions. The compounds influenced genes that can disrupt endocrine systems which can cause neurodevelopmental impairments.

Endocrine disrupting chemicals, or EDCs, are some of the most prevalent toxic chemicals found in the environment because of human activity and they have a variety of adverse effects on both humans and wildlife. A proposed mechanism through which EDCs can negatively affect an organism is via an epigenetic mechanism known as DNA methylation, which can affect the development of the organism with negative outcomes later in life. The aim of this project was to investigate the effect of a prenatal exposure to mixture of EDCs, called Mixture N1, and its adverse effects. Mixture N1 has in a previous study been detected in the first semester of mothers, and linked to language delay in the offspring in the SELMA cohort study. We investigated relationships with DNA methylation pattern changes in key genes with exposure, gene expression and behaviour in the adult brains of the exposed mice.  Our results showed correlative as well as linear relationships between methylation and different behavioural outcomes for target genes. One gene in particular - Nr3c1 - stood out among the results, having links to both stress and sociability. Specifically, DNA methylation of this gene correlates to active stress coping behaviours as well as sociability, but with no mediation component in these relationships. These results are promising for the use of methylation analysis as a biomarker of EDC mixture exposure, but more so as a predictor of negative behavioural outcomes later in life. More research could strengthen this use, and uncover the mechanism through which methylation alone might affect changes in behaviour.

<p> Per- and polyfluoroalkyl substances (PFAS) are a class of persistent environmental contaminants that have become ubiquitous, resulting in widespread exposure among humans and wildlife. Amphibians are regularly exposed in the field, making them susceptible to sublethal effects of PFAS exposure. In amphibians exposed to PFAS, deleterious effects have been observed, including reduction in body condition measured using the scaled mass index (SMI) and degraded hepatic condition, among others. PFAS may dysregulate lipid metabolism by altering signaling cascades regulated by peroxisome proliferator activated receptors (PPAR), but whether changes in energy stores can explain changes in amphibian SMI and/or hepatic condition remain underexplored. Since lipids are a critical energy reserve for anurans, understanding whether lipid metabolism is being perturbed is critical. The central objective of this thesis was to investigate the effect of PFAS on lipid homeostasis in <em>Xenopus laevis </em>tadpoles within the context of a PPAR mechanism of action (MOA), considering apical, molecular, and lipidomic endpoints. I conducted three studies: (a) a study to characterize SMI and the relative expression of the hepatic xPPARα/β/γ during metamorphosis, (b) a pharmaceutical exposure to assess the <em>in vivo</em> effects of xPPARα/β/γ agonism on hepatic gene expression for select downstream targets (<em>apoa5, fabp1, acox1,​ pck1</em>), and (c) a chronic PFAS exposure to investigate the effects of environmentally relevant concentrations (PFOS, PFHxS, PFOA, PFHxA at 0.5 ppb; binary mixture of PFOS:PFHxS at 1 ppb) on lipid homeostasis through apical endpoints (mass, snout vent length, SMI, hepatic condition), relative hepatic gene expression, and Multiple Reaction Monitoring (MRM) profiling of the hepatic lipidome for changes in relative class abundance. In study (a), I identified SMI and hepatic expression of <em>xPPARα/β/γ</em> is dynamic during late metamorphosis, indicating the potential for heightened susceptibility. However, in study (b), pharmaceutical agonists had no effect on <em>X. laevis</em> at high doses. For study (c), I did not observe effects on a majority of apical endpoints, including SMI, but detected a significant sex-specific reduction in hepatic condition for male<em> X. laevis</em> tadpoles exposed to single-chemical perfluorosulfonic acid (PFSA) treatments. For gene expression, I observed a transient downregulation for apolipoprotein-V (<em>apoa5</em>) at Nieuwkoop and Faber (NF) stage 62 for <em>X. laevis</em> tadpoles exposed to single-chemical perfluorocarboxylic acid (PFCA) treatments. Lipid profiling detected transient dysregulation of predominantly membrane lipids in-response to short-chain PFAS treatments at NF 58. Overall, our findings indicate PFAS may exert toxicity during anuran metamorphosis through multiple mechanisms of action (MOA) with sex-specific and developmental-stage specific outcomes.</p>

<p>This thesis presents novel approaches for structural investigation of glucuronides using chemical derivatization in combination with liquid chromatography-electrospray ionization-tandem mass spectrometry (LC-ESI-MSⁿ).</p><p>Today, LC-ESI-MSⁿ is the dominant technique for quantitative as well as qualitative analyses of metabolites, due to its high sensitivity and selectivity. However, for compounds without an easily ionizable group, e.g., steroids, the sensitivity is limited. In the work presented in this thesis, a derivatization procedure forming a basic oxime significantly increased the detection sensitivity for the altrenogest glucuronide. </p><p>Furthermore, in structural evaluations of glucuronides, the limitation of LC-MSⁿ becomes evident due to the initial neutral loss of 176 u, i.e. monodehydrated glucuronic acid, which often makes it impossible to elucidate the structures of the conjugates. To solve this problem, the main part of the work described in this thesis was devoted to chemical derivatization as a means of facilitating the determination of the site of conjugation. </p><p>For the first time, the isomeric estriol glucuronides were evaluated using a combination of three reagents 2-chloro-1-methylpyridinium iodide (CMPI), 1-ethyl-3-(3-dimethyl- aminopropyl)-carbodiimide (EDC), and 2-picolylamine (PA). Interestingly, the derivatization gave a selective fragmentation pattern leading to differentiation of the isomers. </p><p>Another derivatization reagent, 1,2-dimethylimidazole-4-sulfonyl chloride (DMISC), was also tested for the first time in structural investigations. The isomeric glucuronides of morphine, formoterol, and hydroxypropranolol were evaluated. They can all be conjugated in aliphatic as well as aromatic positions. DMISC was proven to be useful in two ways. Firstly, the morphine and formoterol glucuronides that contained a free phenol could be differentiated from those that were conjugated in the aromatic position based on different reactivity. Secondly, for the aromatic <i>O</i>-glucuronide of 4’-hydroxypropranolol, DMISC was proven to react with the amine. This product gave a different fragmentation pattern compared to the corresponding derivative of the aliphatic glucuronide. </p>