Coordenação de Aperfeiçoamento de Pessoal de Nível Superior / Glutathione (γ-L-glutamyl-L-cysteinylglycine) is the major non-protein thiol body and is involved in cellular antioxidant defense. The free glutathione is present mainly in its reduced form (GSH) and can be converted to the oxidized form (GSSG) in the presence of reactive oxygen species (ROS). The GSH/GSSG ratio high is very important for the cellular redox state and a reduction of this ratio is often used as an indicator of oxidative stress. The enzyme glutathione reductase (GR) catalyzes the reduction of GSSG to GSH using NADPH. Because of the great importance of the antioxidant glutathione and considering that it is present in almost all organisms, numerous studies involving several attempts to detect GSH, GSSG and GR in biological systems has been performed. The objective of this study was to validate an automated analytical method, based on a spectrophotometric method proposed by Mannervick and Carlberg in 1985 to measurement the GR activity which is the oxidation of NADPH, which is monitored spectrophotometrically at a wavelength of 340 nm using the automated analyzer Cobas Mira®, determine its limits of reference for a healthy population and further evaluate the pre-analytical interference that influence the analytical phase of hemoglobin, bilirubin and lipemia. The automated method for measuring of the GR activity was validated as recommended by the EMEA and ANVISA. Since it was linear (r2 = 0.990), precise, with a coefficient of variation (CV) in precision intraassay of 5.7% (50 U/L) and 3.4% (100 U/L) and precision interassay CV of 9.5% (50 U/L) and 9.9% (100 U/L). In addition, we observed a recovery of 114.1% with this method considered accurate. The reference limits were evaluated as recommended by the International Federation of Clinical Chemistry (IFCC), and were 21.7 U / L to 60.3 U / L, for a healthy population. In the simulation of hemolysis, lipemia and jaundice in plasma samples, we evaluated the pre-analytical interference in the activity of the GR. All concentrations of Intralipid® (0.67, 1.25, 2.5, 5 and 10 mg / dL), hemoglobin standard (0.0625, 0.125, 0.25, 0.5 and 1 g / dL), and bilirubin (0.9, 1.9, 3.8, 7.5, 15 and 30 mg / dL) resulted in a difference from the original value of GR, and verified a percentage greater than 5%, and this percentage considered for enzymes, analytical interference. Thus, it was concluded that the automated method developed was linear, precise, accurate, simple and inexpensive, and can be adapted to the Cobas Mira® analyzer. The reference limits for a healthy population were established. Furthermore, it was demonstrated that hemoglobin, lipemia and bilirubin interfere in the measurement of the GR activity. / A glutationa (L-γ-glutamil-L-cysteinylglycine) é o principal tiol não proteico do organismo e está envolvida na defesa celular antioxidante. A glutationa livre está presente principalmente na sua forma reduzida (GSH) e pode ser convertida para a forma oxidada (GSSG) na presença de espécies reativas de oxigênio (EROs). A razão GSH/GSSG elevada é muito importante para o estado redox celular e uma redução desta razão é frequentemente utilizada como um indicador do estresse oxidativo. A enzima glutationa redutase (GR) catalisa a redução de GSSG a GSH utilizando NADPH. Devido a grande importância antioxidante da glutationa e considerando que a mesma está presente em quase todos os organismos, numerosas pesquisas envolvendo as mais diversas tentativas de detecção de GSH, GSSG e GR em sistemas biológicos tem sido realizadas. Assim, o objetivo deste estudo foi validar um método analítico automatizado, baseado em um método espectrofotométrico proposto por Mannervick e Carlberg em 1985 para a mensuração da atividade da GR que consiste na oxidação do NADPH, o qual é monitorado espectrofotometricamente no comprimento de onda de 340 nm utilizando o analisador automatizado Cobas Mira®, determinar seus limites de referência para uma população saudável e ainda avaliar a interferência pré-analítica que influenciam na fase analítica da hemoglobina, lipemia e bilirrubina. O método automatizado para a mensuração da atividade da enzima GR foi validado seguindo recomendações da ANVISA e EMEA. Sendo que o mesmo foi linear (r2=0,990), preciso, apresentando um coeficiente de variação (CV) na precisão intraensaio de 5,7% (50 U/L) e 3,4% (100 U/L) e na precisão interensaio um CV de 9,5% (50U/L) e 9,9% (100 U/L). Além disso, foi observada uma recuperação de 114,1%, sendo este método considerado exato. Os limites de referência foram avaliados seguindo recomendações da International Federation of Clinical Chemistry (IFCC), sendo que foram de 21,7 U/L a 60,3 U/L, para uma população saudável. Na simulação da hemólise, lipemia e icterícia em amostras de plasma, avaliou-se a interferência pré-analítica na atividade da GR. Todas as concentrações utilizadas de Intralipid® (0,67; 1,25; 2,5; 5 e 10 mg/dL), de padrão de hemoglobina (0,0625; 0,125; 0,25; 0,5 e 1 g/dL) e de bilirrubina (0,9; 1,9; 3,8; 7,5; 15 e 30 mg/dL) resultaram em uma diferença do valor original de GR, sendo verificada uma porcentagem maior que 5%, sendo essa porcentagem considerada, para enzimas, interferência analítica. Dessa forma, foi possível concluir que o método automatizado desenvolvido foi linear, preciso, exato, simples e de baixo custo, podendo ser adaptado ao analisador Cobas Mira®. Os limites de referência para uma população saudável também foram estabelecidos. Além disso, foi demonstrado que a hemoglobina, a lipemia e a bilirrubina interferem na mensuração da atividade da GR.

Conselho Nacional de Desenvolvimento CientÃfico e TecnolÃgico / Este trabalho teve como objetivo avaliar os efeitos do prÃ-tratamento de pulverizaÃÃo foliar das plantas de milho com perÃxido de hidrogÃnio (H2O2) sobre a aclimataÃÃo ao estresse salino, estudando os mecanismos fisiolÃgicos e bioquÃmicos envolvidos. A presente tese foi dividida em trÃs experimentos independentes que resultaram na produÃÃo de trÃs capÃtulos, cada um correspondendo a um artigo cientÃfico. Os experimentos foram conduzidos em casa de vegetaÃÃo, sob condiÃÃes hidropÃnicas, utilizando o hÃbrido triplo de milho (Zea mays L), BRS 3003. Oito dias apÃs a semeadura, as plÃntulas foram pulverizadas com Ãgua destilada (controle) ou soluÃÃo aquosa de H2O2 na concentraÃÃo de 10 mM e, 48 h apÃs o inÃcio da pulverizaÃÃo, foram submetidas ao tratamento com NaCl a 80 mM. No primeiro trabalho, foram estudados os efeitos da aplicaÃÃo foliar de H2O2 no crescimento e nos teores de solutos orgÃnicos e inorgÃnicos de plantas de milho crescendo sob condiÃÃes salinas. Verificou-se que o prÃ-tratamento de pulverizaÃÃo das plantas de milho com H2O2 induziu aclimataÃÃo das plantas de milho ao estresse salino, revertendo parcialmente os efeitos deletÃrios da salinidade no crescimento. Este efeito foi atribuÃdo, pelo menos em parte, a um maior acÃmulo de proteÃnas solÃveis, carboidratos solÃveis e NO3-, bem como a um menor acÃmulo de Ãons tÃxicos (Na+ e Cl-) nas folhas. O segundo trabalho avaliou os efeitos da aplicaÃÃo foliar de H2O2 no crescimento, na atividade das enzimas antioxidativas, na peroxidaÃÃo dos lipÃdios (teores de malondialdeÃdo-MDA) e na expressÃo da enzima catalase (CAT) em plantas de milho sob condiÃÃes de estresse salino. Constatou-se que a salinidade reduziu o crescimento das plantas e que a aplicaÃÃo foliar de H2O2 minimizou este efeito. Observou-se tambÃm que as enzimas antioxidativas estudadas (catalase, peroxidase do guaiacol, perdoxidase do ascorbato e dismutase do superÃxido) tiveram suas atividades aumentadas pela aplicaÃÃo foliar de H2O2. A CAT se mostrou a principal enzima responsiva ao H2O2 e seu aumento de atividade parace estar relacionado à regulaÃÃo da expressÃo gÃnica. Sob condiÃÃes salinas, a menor peroxidaÃÃo de lipÃdios foi encontrada nas plantas que apresentaram maiores atividades da CAT. De modo geral, concluiu-se que a pulverizaÃÃo foliar das plantas de milho com H2O2 foi capaz de reduzir os efeitos deletÃrios da salinidade no crescimento das plantas e na peroxidaÃÃo dos lipÃdios. Essas respostas podem ser atribuÃdas, pelo menos em parte, à capacidade do H2O2 de induzir aumento na atividade e/ou expressÃo das enzimas antioxidativas, especialmente a CAT. O terceiro trabalho analisou os efeitos da aplicaÃÃo foliar de H2O2 na Ãrea foliar, nos teores relativos de clorofila, nos teores relativos de Ãgua, nas trocas gasosas e nos teores de H2O2, ascorbato e glutationa de plantas de milho crescendo sob condiÃÃes salinas. De modo geral, a salinidade reduziu a Ãrea foliar, os teores relativos de clorofila e os teores relativos de Ãgua e a pulverizaÃÃo foliar com H2O2 foi eficaz em minimizar esse efeito. A salinidade reduziu os parÃmetros fotossintÃticos (condutÃncia estomÃtica, transpiraÃÃo, fotossÃntese e concentraÃÃo interna de CO2) e o prÃ-tratamento de pulverizaÃÃo das plantas com H2O2 foi capaz de reverter parcialmente esse efeito. Os teores de H2O2 foram aumentados pela salinidade tanto nas folhas como nas raÃzes e a pulverizaÃÃo foliar com H2O2 mostrou-se eficiente em reduzir este efeito, sem, contudo, alterar o estado redox dos antioxidantes analisados (ascorbato e glutationa). / This study evaluated the effects of H2O2 leaf spraying pretreatment on the maize plant acclimation to salt stress, studying the physiological and biochemical mechanisms involved. The present thesis was divided into three independent experiments that resulted in three chapters, each one corresponding to a scientific article. The experiments were conducted under hydroponic conditions and maintained in greenhouse, the plant model used was triple hybrid of maize (Zea mays L.), BRS 3003. Eight days after sowing (DAS), the seedlings were sprayed with 10 mM H2O2 solution or distilled water (as a control). Forty-eight hours after the spraying beginning, the seedlings were subjected to treatment with NaCl at 80 mM. In the first study, we analyzed the effects of H2O2 leaf spraying pretreatment on the growth and on the levels of organic and inorganic solutes in maize plants under salt stress. It was observed that H2O2 leaf spraying pretreatment promoted plant acclimation to salt stress, reducing the deleterious effects of salinity on the maize growth. This effect can be attributed, at least partially, to a great production of proteins, and soluble carbohydrates and NO3- as well as lower levels of Cl- and Na+ in leaves. The second study evaluated the effects of H2O2 leaf spraying pretreatment on growth, antioxidative enzymes activity, lipid peroxidation (levels of malondialdehyde - MDA) and on the catalase expression (CAT) in maize plants under salt stress. It was observed that salinity reduced maize seedling growth when compared to control conditions, and H2O2 foliar spraying was effective in minimizing this effect. Analysis of the antioxidative enzymes (catalase, guaiacol peroxidase, ascorbate peroxidase and superoxide dismutase) revealed that H2O2 leaf spraying increased antioxidant enzyme activities. CAT was the most responsive of these enzymes to H2O2, with higher activity since the beginning of the treatment (48 h), while guaiacol peroxidase and ascorbate peroxidase were responsive only at later stages (240 h) of treatment. Increased CAT activity appears linked to gene expression regulation. Lower MDA levels were detected in plants with higher CAT activity, which may result from the protective function of this enzyme. Overall, we can conclude that pretreatment with H2O2 leaf spraying was able to reduce the deleterious salinity effects on seedling growth and lipid peroxidation. These responses could be attributed to the H2O2 ability to induce antioxidant defenses, especially CAT activity. The third study evaluated the effects of H2O2 leaf spraying pretreatment on leaf area, relative chlorophyll content, relative water content, gas exchange and on the H2O2, ascorbate and glutathione contents in salt-stressed maize plants. In general, the salinity reduced leaf area, relative chlorophyll content and relative water content of the maize plants in comparison to the plants that grew under control conditions, moreover H2O2 leaf spraying was effective in minimize this effect. The salt treatment reduced photosynthetic parameters and, the H2O2 leaf spray was able to partially reverse this effect. The H2O2 content was increased by salinity in both, leaves and roots, and H2O2 leaf spray was effective in reducing this negative effect. The H2O2 foliar application did not alter the redox state of the antioxidants studied (ascorbate and glutathione).

Introdução: As neuropatias periférica (NP) e autonômica cardiovascular (NAC) são complicações prevalentes do diabetes mellitus (DM). Há indícios de que seu desenvolvimento se deve não somente ao controle metabólico. Neste sentido, a busca por preditores genéticos faz-se imperativa. Diversos genes relacionados às vias bioquímicas que levam ao dano celular induzido pela hiperglicemia têm sido investigados, destacando-se os genes relacionados às vias do extresse oxidativo. O balanço entre os sistemas antioxidantes (como glutationa e tiorredoxina) e pró-oxidantes (como o NADPH-oxidase) é um importante fator na defesa celular contra o estresse oxidativo. Objetivo primário: avaliar a associação entre os polimorfismos de um único nucleotídeo (SNP) pertencentes às vias anti- e pró-oxidantes mencionadas e a NP e NAC em pacientes DM tipo 1: 718C/T na região 3\' UTR (untranslated region) (rs713041) no gene da glutationa peroxidase 4 (GPX4); -129 C/T (rs1788390) no gene da glutamato cisteína ligase (GLCL); -1365 C/T (rs7211) no gene da proteína de interação com a tiorredoxina (TXNIP); -2810 A/G (rs6610650) no gene do CYBB; - 675 T/A (não registrado) no gene do CYBA. Objetivo secundário: avaliar a relação entre as diferentes complicações microvasculares entre si (neuropatia, doença renal diabética [DRD] e retinopatia diabética [RD]). Material e métodos: foram selecionados 378 pacientes com DM tipo 1 do Hospital das Clínicas da Faculdade de Medicina da Universidade de São Paulo e do Hospital das Clínicas da Universidade Estadual de Campinas com mais de 10 anos de doença e controle inadequado (HbA1c >8% em algum período da vida), e examinados para NP e NAC. A genotipagem dos polimorfismos foi realizada pela técnica de reação em cadeia da polimerase em tempo real (Sistema Taqman ®). Foram avaliadas variáveis clínicas, laboratoriais do metabolismo glicêmico e lipídico e a presença de DRD e de RD. Foram avaliados 257 pacientes retrospectivamente quanto à evolução da taxa de filtração glomerular estimada (TFGe) em relação à NP e NAC. O teste de Pearson foi usado para comparar as frequências dos genótipos e a magnitude de associação foi estimada pelo cálculo do odds ratios (OR), com respectivo intervalo de confiança (IC) ajustada por regressão logística para possíveis fatores de confusão. Resultados: A presença de pelo menos um alelo T do SNP +718C/T no gene GPX4 conferiu proteção para NAC (OR=0,39; IC 95% 0,17 - 0,84; P = 0,0165). Na análise de associação entre as complicações, observou-se que: (1) na presença de NP há aumento na probabilidade de NAC (OR = 3,38; IC95% 2,01 - 5,73; P < 0,0001), de albuminúria A3 (OR = 7,17; IC95% 3,68 - 14,53; P < 0,0001) e de RD proliferativa (OR = 9,58; IC95% 5,04 - 19,09; P < 0,0001) e (2) na presença de NAC há aumento na probabilidade de NP (OR = 3,72; IC95% 2,14 - 6,53; P < 0,0001), de albuminuria A3 (OR = 9,37; IC95% 4,68 - 19,65; P < 0,0001) e de RD proliferativa (OR = 3,30; IC95% 1,81 - 6,18, P < 0,0001). No subgrupo avaliado retrospectivamente, a presença de NP e de NAC associou-se com queda de TFGe anual maior (-4,74 mL/min/ano vs. -1,22 mL/min/ano; P < 0,0001 e -3,74 mL/min/ano vs. -1,54 mL/min/ano; P = 0,04, respectivamente). Conclusões: (1) a presença do alelo T no SNP +718C/T (rs713041) no gene GPX4 confere proteção para NAC na população com DM tipo 1 estudada e (2) existe associação de risco para NP e NAC entre si e para as formas graves de DRD e RD / Introduction: Peripheral (PN) and cardiovascular autonomic neuropathies (CAN) are prevalent complications of diabetes mellitus (DM). There are indications that their development occurs not only secondary to metabolic control. Thus, search for genetic predictors is very important. Several genes related to the biochemical pathways that lead to cellular damage induced by hyperglycemia have been investigated, emphasizing the genes related to the pathways of oxidative stress. The balance between antioxidant systems (such as glutathione and thioredoxin) and pro-oxidants (such as NADPH oxidase) is an important factor in cell defense against oxidative stress. Primary objective: to evaluate the association between the single nucleotide polymorphisms (SNP) of the mentioned anti-and pro-oxidant pathways and NP and NAC in type 1 DM patients: 718C / T in the 3 \'UTR (untranslated region) (rs713041) of the glutathione peroxidase 4 gene (GPX4); -129 C / T (rs1788390) in the glutamate cysteine ligase gene (GLCL); -1365 C / T (rs7211) in the thioredoxin interaction protein gene (TXNIP); -2810 A / G (rs6610650) in the CYBB gene; - 675 T / A (unregistered) in the CYBA gene. Secondary objective: to evaluate the relationship between different microvascular complications (neuropathy, diabetic renal disease [DRD] and diabetic retinopathy [DR]). Material and methods: 378 type 1 patients DM were selected from the Hospital das Clínicas da Faculdade de Medicina da Universidade de São Paulo and from Hospital das Clínicas da Universidade Estadual de Campinas; they had more than 10 years of disease and inadequate control (HbA1c > 8% at some period of life), and were examined for NP and NAC. Polymorphism genotyping was performed by real-time polymerase chain reaction (Taqman System®). Clinical, glycemic and lipid metabolism laboratorial variables and the presence of DRD and DR were evaluated. Also 257 patients were retrospectively evaluated regarding the evolution of the estimated glomerular filtration rate (eGFR) in relation to PN and CAN. The Pearson test was used to compare the frequencies of the genotypes and the magnitude of association was estimated by the odds ratios (OR), with the respective confidence interval (CI) adjusted by logistic regression for possible confounding factors. Results: The presence of at least one T allele at the SNP + 718C / T of the GPX4 gene protected for CAN (OR = 0.39; 95% CI 0.17-0.84; P = 0.0165). In the analysis of the association between complications, it was observed that: (1) in the presence of NP, there was an increase in risk of NAC (OR = 3.38; 95% CI 2.01 - 5.73; P < 0.0001), of albuminuria A3 (OR = 7.17; 95% CI 3.68 - 14.53; P < 0.0001) and of proliferative DR (OR = 9.58; 95% CI, 5.04 - 19.09; P < 0.0001) (2) in the presence of CAN, there was an increase in risk of PN (OR = 3.72; 95% CI 2.14 - 6.53; P < 0.0001), albuminuria A3 (OR = 9.37; CI95% 4.68 - 19.65; P<0,0001) and proliferative DR (OR = 3.30; CI95% 1.81 - 6.18; P < 0,0001).) In the subgroup evaluated retrospectively, the presence of PN and CAN was associated with a greater annual decrease of eGFR (-4.74 mL / min / year vs. -1.22 mL / min / year, P < 0.0001 and - 3.74 mL / min / yr vs. -1.54 mL / min / yr, P < 0.04, respectively). Conclusions: (1) the presence of the T allele at the SNP + 718C / T (rs713041) in the GPX4 gene confers protection for the presence of CAN in the studied type 1 DM population and (2) there is a risk association for PN and CAN among themselves and for severe forms of DRD and RD

A nefropatia diabética (ND) é uma das principais causas de nefropatia crônica, o que torna o diabetes mellitus (DM) responsável por 44% da prevalência de doença renal crônica (DRC) no mundo. O papel do estresse oxidativo na patogênese da ND está bem estabelecido e genes pertencentes a vias pró- e antioxidantes são possíveis candidatos a conferirem susceptibilidade genética a essa e a outras complicações crônicas. Além do estresse oxidativo, o transporte intracelular de glicose, mediado por transportadores específicos, também parece exercer influência sobre a ND e outras complicações. O objetivo deste trabalho foi avaliar a associação entre ND e alguns polimorfismos de um único nucleotídeo (SNPs) em genes que codificam proteínas transportadoras de glicose (GLUT2 [SLC2A2]), proteínas pró-oxidantes (p22phox [CYBA] e NOX-2 [CYBB]) e proteínas antioxidantes (glutationa peroxidase-4 [GPX4] e catalase [CAT]) em uma coorte brasileira (n=453; 45,8% de pacientes com ND) e três coortes francesas (SURGENE [n=340; 17,7% de pacientes com ND na fase basal], GENEDIAB [n=313; 66,7% de pacientes com ND] e GENESIS [n=636; 49,7% de pacientes com ND]) de pacientes portadores de DM tipo 1. Os SNPs foram genotipados com o uso da técnica de reação em cadeia da polimerase (PCR) em tempo real e os resultados expressos em odds ratio (OR) ou hazard ratio (HR), com seus respectivos intervalos de confiança (IC), determinados em modelos ajustados de regressão logística politômica ou regressão de risco proporcional de Cox, respectivamente. A razão albumina/creatinina urinária (ACR) ou a taxa de excreção urinária de albumina (EUA) foram utilizadas para definir os estágios de ND e os pacientes foram classificados de acordo com a presença ou ausência de ND incipiente (ACR 30 - 300 mg/g de creatinina ou EUA 20 - 200 ?g/min ou 20 - 200 mg/L) e creatinina plasmática <1,7 mg/dL), ND estabilizada (ACR >300 mg/g de creatinina ou EUA > 200 ug/min ou > 200 mg/L e creatinina plasmática < 1,7 mg/dL ) ou ND avançada (ACR > 300 mg/g de creatinina ou EUA > 200 ug/min ou > 200 mg/L e creatinina plasmática > 1,7 mg/dL ou qualquer terapia de reposição renal) e também foram avaliadas associações dos SNPs com a taxa de filtração glomerular estimada (TFGe). O alelo raro A do SNP rs6610650 no gene CYBB foi associado com valores baixos de TFGe em mulheres na coorte brasileira e com a prevalência de ND estabilizada/avançada em mulheres da coorte francesa (OR 1,75; IC 95% 1,11 - 2,78; p=0,016). O alelo raro T do SNP rs713041 no gene GPX4 foi inversamente associado com a prevalência de ND estabilizada/avançada em homens na coorte brasileira (OR 0,30, IC95% 0,13 - 0,68, p=0,004) e com valores elevados de TFGe em homens na coorte francesa. O alelo raro A do SNP rs7947841 no gene CAT foi associado com a prevalência de ND incipiente (OR 2,79; IC95% 1,21 - 6,24; p=0,01) e ND estabilizada/avançada (OR 5,72; IC95% 1,62 - 22,03; p=0,007), bem como com a incidência de eventos renais, definidos como novos casos de microalbuminúria ou progressão para um estágio mais grave de ND durante o seguimento de estudo, na coorte SURGENE (HR 1,82; IC95% 1,13 - 2,81; p=0,01). O mesmo alelo de risco associou-se com a prevalência de ND incipiente (OR 3,13; IC95% 1,42 - 7,24; p=0,004) e com a incidência de insuficiência renal crônica terminal (IRCT) na coorte GENEDIAB (HR 2,11; IC95% 1,23 - 3,60; p=0,008) e com a prevalência de ND incipiente (OR 2,16; IC95% 1,14 - 4,10, p=0,02) e ND estabilizada/avançada (OR 2,71; IC95% 1,38 - 5,42; p=0,004) na coorte brasileira. O alelo raro T do SNP rs9932581 no gene CYBA foi inversamente associado com a prevalência de ND estabilizada/avançada (OR 0,60; IC95% 0,46 - 0,78; p=0,0001) e com valores mais baixos de TFGe nos pacientes de descendência europeia da coorte GENESIS/GENEDIAB. Este mesmo alelo foi associado com a incidência de eventos renais e de IRCT nas coortes SURGENE (HR 0,63; IC95% 0,46 - 0,86; p=0,003) e GENESIS/GENEDIAB (HR 0,51; IC95% 0,31 - 0,78; p=0,002), respectivamente. Entretanto estes resultados não foram replicados na coorte brasileira. O alelo raro T do SNP rs11924032 no gene SLC2A2 foi inversamente associado com a perda da TFGe ao logo do tempo (0,02%/ano vs 2,18%/ano para os pacientes portadores do genótipo GG; p=0,005), na coorte SURGENE. Este mesmo alelo foi inversamente associado com a incidência de IRCT nas coortes GENESIS/GENEDIAB (HR 0,53; IC95% 0,29 - 0,89; p=0,01). Os resultados observados para o gene SLC2A2 não forneceram fortes indícios para afirmarmos que este gene exerça um papel relevante no desenvolvimento da ND nos pacientes com DM tipo 1 nas coortes francesas estudadas. Em contrapartida, os SNPs nos genes que codificam as proteínas pró-oxidantes CYBA e CYBB e as proteínas antioxidantes GPX-4 e CAT foram capazes de modular o risco para doença renal em pacientes portadores de DM tipo 1, sendo que os SNPs presentes nos genes CYBB, GPX4 e CAT tiveram seus resultados replicados em coortes independentes, o que corrobora a importância destes genes e, consequentemente, do estresse oxidativo, na patogênese da ND / Diabetic nephropathy (DN) is a major cause of chronic nephropathy, with diabetes mellitus (DM) accounting for 44% of the prevalence of chronic kidney disease (CKD) in the world. The role of oxidative stress in the pathogenesis of DN is well established and genes belonging to pro- and antioxidant pathways are possible candidates to confer genetic susceptibility to this and other chronic complications. Besides oxidative stress, intracellular glucose transport mediated by specific transporters, also appears to influence DN and other complications. The aim of this study was to evaluate the association between DN and some single nucleotide polymorphisms (SNPs) present in genes encoding glucose transport proteins (GLUT2 [SLC2A2]), pro- (p22phox [CYBA] and NOX-2 [CYBB]) and antioxidants (glutathione peroxidase-4 [GPX4] and catalase [CAT]) proteins, in a Brazilian cohort [n= 453; 45.8% f patients with DN], and three French cohorts (SURGENE [n=340; 17.7% of patients with DN at baseline], GENEDIAB [n=313; 66.7% of patients with DN], and GENESIS [n=636; 49.7% of patients with DN]) of patients with type 1 DM. The SNPs were genotyped using the technique of real time polymerase chain reaction (PCR) and results expressed as odds ratio (OR) and hazard ratio (HR), with their respectively 95% confidence intervals (CI), determined by adjusted models of polytomic logistic regression and Cox proportional hazard regression, respectively. The albumin/creatinine ratio (ACR) or the urinary albumin excretion (UAE) rate were used to define the DN stages and the patients were classified according to the presence or absence of incipient DN (ACR 30 - 300 mg/g of creatinine or UAE 20 - 200 ug/min or 20 - 200 mg/L) and plasmatic creatinine < 1,7 mg/dL), established DN (ACR > 300 mg/g of creatinine or EUA > 200 ug/min or > 200 mg/L and plasmatic creatinine <1,7 mg/dL) or advanced DN (ACR >300 mg/g of creatinine or UAE > 200 ug/min or > 200 mg/L and plasmatic creatinine > 1,7 mg/dL or any renal replacement therapy). Associations for the estimated glomerular filtration rate (eGFR) were also evaluated. The rare allele A of the SNP rs6610650 in CYBB gene was associated with low values of eGFR in women in the Brazilian cohort and with the prevalence of established/advanced DN in women in the French cohort (OR 1.75, 95%CI 1.11 - 2.78, p=0.016). The rare allele T of the SNP rs713041 in GPX4 gene was inversely associated with the prevalence of established/advanced DN in men in the Brazilian cohort (OR 0.30, 95%CI 0.13 - 0.68, p=0.004) and with higher values of eGFR in men in the French cohort. The rare allele A of the SNP rs7947841 in CAT gene was associated with the prevalence of incipient DN (OR 2.79, 95%CI 1.21 - 6.24, p=0.01) and established/advanced DN (OR 5.72; 95%CI 1.62 - 22.03, p=0.007) as well as the incidence of renal events, defined as new cases of microalbuminuria or progression to a more severe stage during the follow-up study, in SURGENE cohort (HR 1.82, 95%CI 1.13 - 2.81, p=0.01). The same risk allele was associated with the prevalence of incipient DN (OR 3.13, 95%CI 1.42 - 7.24, p=0.004), the incidence of end-stage renal disease (ESRD) in the cohort GENEDIAB (HR 2.11, 95%CI 1.23 - 3.60, p=0.008) and with the prevalence of incipient DN (OR 2.16, 95%CI 1.14 - 4.10, p=0.02) and established/advanced DN (OR 2.71, 95%CI 1.38 - 5.42, p=0.004) in the Brazilian cohort. The rare T allele of the SNP rs9932581 in CYBA gene was inversely associated with the prevalence of established/advanced DN (OR: 0.60, 95%CI: 0.46 - .78, p=0.0001) and associated with lower values of eGFR in patients of GENESIS/GENEDIAB cohort. The same allele was inversely associated with the incidence of renal events and ESRD in SURGENE (HR 0.63, 95%CI 0.46 - 0.86, p=0.003) and GENESIS/GENEDIAB (HR 0.51, 95%CI 0.31 - 0.78, p=0.002) cohorts. However, these results were not replicated in the Brazilian cohort. The rare T allele of the SNP rs11924032 in SLC2A2 gene was inversely associated with the loss of eGFR during the follow-up (0.02%/year vs. 2.18%/year for patients with the GG genotype, p=0.005) in the SURGENE cohort. The same allele was inversely associated with the incidence of ESRD in the GENESIS/GENEDIAB cohorts (HR 0.53, 95%CI 0.29 - 0.89, p=0.01). The results observed for the SLC2A2 gene, in this study, did not provide strong evidence to state that this gene exerts a relevant role in the development of DN in patients with type 1 DM in the studied cohorts. However, SNPs in genes encoding the pro-oxidant proteins CYBA and CYBB, and the antioxidants proteins GPX-4 and CAT were able to modulate the risk of renal disease in patients with type 1 DM. The studied SNPs in CYBB, GPX4 and CAT genes had their results replicated in independent cohorts, which confirms the importance of these genes and, hence, of the oxidative stress in the pathogenesis of DN

INTRODUÇÃO: Metionina (Met), cisteína (Cys), homocisteína (Hcy) e taurina (Tau) são os quatro aminoácidos sulfurados (AAS), mas apenas a Met e Cys são incorporadas em proteínas. Os três principais produtos doS AAS, glutationa, (GSH), Hcy e Tau influenciam, principalmente, as respostas inflamatória e imune. A Tau e GSH diminuem a inflamação, enquanto que a Hcy apresenta efeito oposto. Os pacientes HIV+ apresentam baixos níveis de GSH e outros nutrientes antioxidantes, mostrando relação direta entre Cys (e GSH) com células CD4+. Não se conhece o mecanismo pelo qual as mudanças na ingestão dos AAS influenciam este fenômeno. Paralelamente, as relações entre Hcy, doenças inflamatórias e alterações in vitro no comportamento das células imunes levantou ressalvas sobre a suplementação de dietas com AAS. OBJETIVOS : investigar as vias dos AAS em pacientes HIV+ nas condições de jejum e pós-sobrecarga de Met frente à dieta habitual (OH) isolada ou acompanhada da suplementação de Cys (NAC) ou glutamina (Gln). MÉTODOS : 12 pacientes HIV+ (6 M e 6 F, de 25 a 36 anos), sob tratamento anti-retroviral pelo esquema tríplice, sem infecções secundárias e 20 controles saudáveis (10M e 10F, 23-28 anos) foram randomicamente distribuídos para suplementação com NAC (N-acetilcisteína, 1g/d) ou Gln (20 g/d) em estudo cruzado com 7 dias de dieta separados por uma semana de washout (Wo com DH). Amostras de sangue após jejum noturno de 10 a 12 horas foram coletadas antes (MO) e após (M1) cada regime dietético. A seguir, os indivíduos ingeriram metionina (100 mg/kg), com coletas de sangue após 2 e 4 horas para a determinação da área abaixo da curva (AAC). No MO, ambos os grupos foram avaliados quanto à antropometria (IMC, kg/m2), funções glomerular (uréia, creatinina) e hepatocelular (&#947;-GT), estados nutricional (albumina, cálcio, ácido fólico e vitamina 812) e antioxidante (ácido úrico, GSH, GSSG, Hcy), glicose, lipídios (triacilgliceróis e frações de colesterol) e AAS, serina (Ser), glicina (Gly), glutamato (Glu) e Gln. O grupo HIV também foi caracterizado pela carga viral e contagem de CD4+ e CD8+. As comparações estatísticas entre os grupos e entre as dietas mostraram homogeneidade para IMC, albumina, cálcio, vitamina 812, Hcy, HDL-colesterol, uréia e creatinina. Os pacientes apresentaram valores maiores de glicose, triacilgliceróis, &#947;-GT, LDL-colesterol e GSSG paralelalemente às menores concentrações de ácido úrico, GSH e todos os AAS, exceto Hcy. A sobrecarga de metionina igualou (pelos valores de delta) os grupos para Met, Hcy, Tau e Gln. As suplementações de NAC e Gln levaram o grupo HIV+ a concentrações maiores de GSH (NAC > Gln), atuando diferentemente em seus precursores: G/y (Gln > NAC) e Cys (NAC > Gln) e resultando em consumo similar de Ser e produção de Tau. Ambas as dietas reduziram GSSG/GSH (NAC > Gln) e apenas NAC aumentou (6 x) a Hcy. Esta última foi piorada pela sobrecarga de Mel. Assim, HIV+ resulta em deficiências múltiplas de vitaminas e aminoácidos levando a menores níveis de GSH e GSSG/GSH mais elevada. Os principais problemas de menor formação de Cys e menor incorporação de Cys em GSH foram resolvidos dando-se Met, NAC e Gln aos pacientes, ainda permanecendo a desvantagem do aumento da Hcy com Met ou suplementação de NAC. / BACKGROUNO: Methionine (Met), cysteine (Cys), homocysteine (Hcy), and, taurine (Tau) are the 4 sulfur-containing amino acids (SAA), but only Met and Cys are incorporated into proteins. The 3 major products of SAA, glutathione (GSH), Hcy and Tau influence, mainly, inflammatory and of immune responses. Tau and GSH ameliorate inflammation whereas Hcy has the opposite effect. HIV+ patients present low levelis of GSH and other antioxidants nutrients, showing a direct relationship between Cys (and GSH) with CD4+/ cells. How changes in SAA intake influence this phenomenon is unknown and the relationships among Hcy, inflammatory diseases, and in vitro alterations in immune cell behavior create a cautionary note about supplementation of diets with SAA. OBJECTIVE: To investigate SAA pathways in HIV+ patients on fast and Met-overload (Met-DL) states after taken diet habitual without (HD) or with supplements of Cys (NAC) or glutamine (Gln). METHOOS: 12 HIV+ (6M and 6F, 25-36 yrs old) patients under HAART without secondary infections and 20 healthy (10M and 10F, 23-28 yrs old) controls were randomly assigned to either NAC (N-acetylcysteine, 1g/d) or Gln (20g/d) diets, in a 7-day diet crossover design, separated by a 7-day washout (with HD) period. Blood samples were drawn after overnight fast before (MO) and after each dietary treatments (M1) for the resting measurements. Immediately after blood sampling ali subjects started the Met-DL by ingesting at once 100 mg Met/kg BW and having the blood draw after 2 and 4 hours for the area under the curve (AUC) determination. At MO both groups were assessed for anthropometry (BMI, kg/m2), glomerular (plasma urea and creatinina) and hepatocellular (plasma &#947;GT activity) funetions, nutritional (albumin, calcium, folic acid and vitamin B12) and antioxidant (uric acid, GSH, GSSG, Hey) states, glucose, lipids (triglycerides and cholesterol fractions) and SAA, serine (Ser), glyeine (Gly), glutamate (Glu) and Gln. The HIV+ group was characterized also by viral load, CD4+ and CD8+ counts. The statistical comparisons between groups and among diets showed group homogeneity for 8MI, albumin, calcium, vitamin B12, Hey, HDL-cholesterol, urea and creatinine. The patients presented higher values of glucose, triglycerides, &#947;-GT, LDL-cholesterol, and GSSG along with lower concentrations of uric acid, GSH and all but Hcy amino acids. The Met-OL equalized (&#916; values) the groups for Met, Hcy, Tau and Gln. NAC and Gln diets led the HIV+ group to a higher concentrations of GSH (NAC > Gln) by acting differently on its precursors: Gly (Gln > NAC) and Cys (NAC > Gln), resulting similar consumption of Ser and production of Tau. Both diets reduced GSSG/GSH (NAC > Gln) and only NAC increased (6 x) Hey. The later was worsened by Met-OL. Thus HIV+ results in multiple deficiencies of vitamins and amino acids leading to lower levels of GSH and higher GSSG/GSH ration. The main problems of lower formation of Cys and low ineorporation of Cys and Gly into GSH were greatly solved by giving Met, NAC and Gln to the patients, hence remaining the drawback of increasing Hcy with Met or NAC supplements.

Bio-inspired or biomimetic chemistry deals with the replication of the nature’s fundamental processes, which can help in understanding the functioning of biological systems and develop novel applications. Although a large number of researchers worked towards the replication of natural synthetic pathways through biogenetic syntheses, enzyme mimicry by the small organic molecules and inorganic complexes emerged in leaps and bounds over the years. The development of biomimetic chemistry then continued in designing the molecules that can function like enzymes. And now, with the advent of nanotechnology, nanostructured materials have been shown to exhibit enzyme-like activities (nanozymes). Interestingly, the two distinct fields, biology and materials science, have been integrated to form an entirely new area of research that has captured a great attention. Along with the pronounced application of nanomaterials as drug delivery vehicles, anticancer agents, antimicrobials, etc., research is also focused on designing nanomaterials for the biomimetic applications. The thesis consists of five chapters. The first chapter provides a general overview of the recently discovered nanozymes that mimic heme-peroxidase, oxidase, superoxide dismutase, catalase, haloperoxidase and phosphatase. This chapter also deals with the nanozymes’ application in sensing and immunoassay, and as antioxidants, neuroprotective agents. The factors affecting the nanozymes’ activity and the challenges associated with them is also covered in this chapter. Chapter 2 is divided into two parts and it deals with the biomimetic properties of graphene-based materials. In part A, the remarkable peroxynitrite (PN) reductase and isomerase activities of hemin-functionalized reduced graphene oxide (rGO) is discussed. In part B, the activity of graphene oxide (GO) as peroxide substrate for the glutathione peroxidase (GPx) enzyme is discussed. In chapter 3, the oxidant material, V2O5, is shown to exhibit significant GPx-like antioxidant activity in its nano-form. Chapter 4 deals with the oxidase-like activity of MnFe2O4 nanooctahedrons for the antibody-free detection of major oxidative stress biomarker, carbonylated proteins. In chapter 5, the phosphotriesterase mimetic role of vacancy engineered nanoceria is discussed. instead of H2O2 for glutathione peroxidase (GPx) enzyme. As partial reduction of GO was observed when treated with GPx enzyme due to the fact that large sheet-like structures cannot be accessible to the active site, we studied the reaction with some GPx mimetics (Fig. 2). Varying the concentration of cofactor glutathione (GSH) required for the reaction, GPx mimic, ditelluride, could accomplish the reduction of GO following Michaelis-Menten kinetics. As the structure of GO is elusive and under active investigation, our study highlights the presence of peroxide linkages as integral part of GO other than hydroxyl, epoxy and carboxylic groups. This study also highlights an important fact that the modification of GO by biologically relevant compounds such as redox proteins must be taken into account when using GO for biomedical applications because such modifications can alter the fundamental properties of GO. Figure 2. The GO reductase and decarboxylase activities of GPx mimetic ditelluride compound, suggesting the presence of peroxide linkages on GO. In chapter 3, we have discussed about the novel antioxidant nanozyme that combats oxidative stress. During our attempts in the investigation of antioxidant nanozymes, we surprisingly noticed that the oxidant material, V2O5, shows significant GPx-like antioxidant activity in its nano-form. The Vn readily internalize in the cells and exhibit remarkable protective effects when challenged against reactive oxygen species (ROS). Although Vn has been shown to protect cells from ROS-induced damage, cells treated with bulk V2O5 and few vanadium complexes resulted in generation of ROS and severe toxicity. Detailed investigation on the mechanism of this interesting phenomenon Chapter 4 deals with the development of novel methodology for detection of biomarkers. Inspired by the use of antibodies and enzymes for detection of a specific antigen, we have shown for the first time that the nanozymes can entirely replace antibodies and enzymes in Enzyme-linked Immunosorbent Assays (ELISA). As a specific example, we focused on the antibody-free detection of chief oxidative stress biomarker, carbonylated proteins, as our target. To achieve this, we designed MnFe2O4 nanooctahedrons that can function as oxidase enzyme and form signaling point of detection. We functionalized MnFe2O4 nanooctahedrons with hydrazide terminating groups so that carbonylated proteins can be linked to nanozymes by hydrazone linkage (Fig. 4a). Treatment of various carbonylated proteins (hemoglobin (Hb), Myoglobin (Mb), Cytochrome c (Cyt c), RNase and BSA) coated in well plate with hydrazide-terminated MnFe2O4 nanooctahedrons and then with 3,3’,5,5’-tetramethylbenzidine substrate, resulted in instantaneous detection by well plate reader (Fig. 4b). Considering the challenges and difficulties associated with the conventional methods used to detect such modified proteins, this methodology opens up a new avenue for the simple, cost-effective, instantaneous and entirely antibody-free ELISA-type detection of carbonylated proteins. Our results provide a cumulative application of nanozymes’ technology in oxidative stress associated areas and pave a new way for direct early detection of post translational modification (PTM) related diseases. Figure 4. a) Nanozyme linked to the carbonylated protein coated on a plate through hydrazone linkage. b) General bar diagram showing detection of oxidized (carbonylated) proteins by nanozymes. Synopsis Figure 5. a) A cartoon view of surface of ceria showing vacancy. b) Zoomed portion of high resolution transmission electron microscopic image showing few vacancies on the surface of nanoceria. c) Catalytic mechanism of detoxification of paraoxon at the defect site. In the final chapter, chapter 5, we have discussed about the nanomaterial that can function as phosphotriesterase enzyme. Phosphotriesterase enzyme is a bacterial enzyme that is involved in the rapid hydrolysis of sarin gas-related deadly nerve agents such as paraoxon, parathion and malathion. When encountered with these orgnaophospatetriesters, living beings tend to undergo nerve shock to cause paralysis by inhibiting an extremely important enzyme called acetylcholine esterase. They are also known to cause severe oxidative stress problems and are associated with neurodegenerative disorders. Therefore, curbing the toxic effects and detoxification of these nerve agents is a world-wide concern and many research teams have focused their attention to address this important problem. Working on the development of nanozymes for important problems, we found that nanoceria, especially the vacancy engineered one (Fig. 5a,b), can serve as active mimic of phosphotriesterase enzyme in the presence of N-methylmorpholine (acting as a distal base histidine). Vacancy engineered nanoceria has been shown to catalyze the hydrolysis of high amounts of paraoxon quiet efficiently and within few minutes with very low activation energy and high kcat. Detailed mechanistic investigation revealed that the presence of both Ce(III) and Ce(IV) is very essential for detoxification activity (Fig. 5b). The vacancies on the surface of nanoceria, were the buried Ce(III) ions are directly exposed to the reaction environment, behave as hotspots or enzyme active sites for detoxification reaction (Fig. 5b).

The role of mitochondria is multidimensional and ranges in vast areas, including apoptosis, cellular response towards stress, metabolism, which is regulated by a plethora of proteins, acting together to maintain cellular and organellar homeostasis. In spite of the presence of mitochondrial DNA, most of the mitochondrial proteins are nuclear encoded and translocated inside the organelle through dedicated translocases present on outer and inner membrane of mitochondria. To fulfil the cellular energy demand, mitochondria efficiently generate ATP by oxidative phosphorylation, and thus are considered as "power house of cell." There occurs a transfer of electrons from various oxidizable substrates to oxygen, which is achieved by a series of redox reactions with generation of water as a byproduct. This process is coupled with ATP synthesis, involves five protein-complexes present in the inner mitochondrial membrane. During this process, it generates extremely reactive intermediate species of oxygen as a byproduct collectively referred as Reactive Oxygen Species (ROS) through partial reduction of oxygen. These intermediate metabolites of oxygen include superoxide anion (O2-º), H2O2 and highly reactive hydroxyl radicals (OHº). Although ROS are produced by different cellular sources, such as widely expressed and evolutionary conserved NADPH Oxidases, xanthine oxidase, cyclooxygenases, lipoxygenases and cytochrome P450 enzymes but mitochondria are one of the major contributors of cellular ROS. Earlier, reactive oxygen species were considered as harmful but for past few decades, the role ROS has been appreciated as signalling molecules. Because of their high reactivity, these species can cause redox mediated modifications to cellular components and thus have an ability to participate in signalling process. The regulation of signalling pathway by ROS is governed by either alterations in cellular redox conditions or by oxidative modifications of certain residues in proteins, which are involved in signalling cascades. Reactive Oxygen Species can modify amino acid residues, interact with Fe-S clusters or other metal complexes and induce dimerization of proteins to alter protein structure and function. ROS causes modifications to critical amino acids, mainly by oxidation of cysteine residues, where oxidation of sulfhydryl group (-SH) of a single cysteine residue leads to formation of sulfenic (-SOH), sulfinic (-SO2H), sulfonic (-SO3H), or S-glutathionylated (-SSG) derivatives. Thus, by incorporating these modifications, ROS affects the function of proteins, thereby modulating the cellular signalling process. On the other hand, the accumulation of higher level of reactive oxygen species may damage cellular components causing oxidative stress. Therefore, it is necessary to maintain the ROS levels and regulation of intracellular redox homeostasis depends upon a complex network of antioxidant molecules. These antioxidants range from low molecular weight glutathione to large proteins like glutathione peroxidases. Cell has an array of antioxidants with different subcellular locations. Superoxide Dismutase which catalyzes dismutation of superoxides and converts them to H2O2, localizes in cytosol, mitochondrial intermembrane space and extracellular matrix. Different isoforms of Glutatione Peroxidases (GPx) and Peroxiredoxins (Prx) are located in cytosol as well as in mitochondria and scavenge H2O2 by using glutathione (GSH) and thioredoxin (Trx) respectively, as co-factors. During this peroxidase activity of GPx and Prx, GSH and Trx get oxidized and recycled back to the reduced form by Glutathione Reductase (GR) and Thioredoxin Reductase (TR) correspondingly, with the help of NADPH. Thus, GPx system (GPx, GR, GSH and NADPH) and Prx system (Prx, Trx, TR and NADPH) helps in maintenance of redox balance by scavenging H2O2. Catalase is present in peroxisomes for the catalytic degradation of H2O2. Along with Thioredoxin, glutaredoxin (Grx) also reduces protein disulphides and maintains the redox homeostasis. Although, reactive oxygen species are important for normal physiological process, oxidative stress caused by imbalanced ROS levels is thought to be involved in progression of many disorders. However, in most of the diseases, the role of ROS is not yet clear. Elevated oxidative stress is observed with insulin resistance and progression of type II diabetes mellitus, and the resultant high glucose levels alter mitochondrial physiology, leading to the fragmentation of organelle. However, on contrary it has also been observed that ROS improves insulin sensitivity. ROS is directly involved in progression of neurodegenerative disorders, which are characterized by oxidative stress mediated neuronal loss. Interestingly, in case of cancer ROS plays a differential role. At moderately higher levels, ROS helps cancer cells to detach from the matrix and thus assist in metastasis but the higher accumulation of ROS leads to oxidative stress mediated cell death. Thus, cancer cells have an enhanced expression level of antioxidants to maintain the optimum ROS concentration for their survival and proliferation. The role of ROS in cellular signalling and progression of diseases highlights the importance of redox regulation. Mitochondria being the major source of ROS, harbours various redox regulators such as a mitochondrial permeability transition pore (mPTP), inner membrane anion channel (IMAC), Ca++ ions, etc. In addition, certain proteins like Hsp31/DJ1 class also translocate into the organelle in a stress dependent manner to maintain redox homeostasis. These proteins are encoded by the nuclear genome and translocated in the organelle, suggesting the importance of mitochondrial import machinery in regulation of redox balance. Another such example is MIA pathway of protein import, where MIA40 regulates ROS indirectly by catalyzing folding of disulfide containing proteins such as SOD-1 in a redox coupled process. However, under most cases, the physiological disorders lead to uncontrolled production of reactive oxygen species, thereby overloading the cellular antioxidant defence machinery. The failure of the antioxidant machinery leads to enhanced disease progression. Under such disease conditions where the upheaval of redox homeostasis leads to the accumulation of ROS, artificial antioxidants can be used to protect cells against oxidative damage. Artificial systems such as Cyclodextrins, metal complexes, porphyrins, polymers, supramolecules and biomolecules such as nucleic acids, catalytic antibodies and proteins, have been created to mimic the structures and functions of natural enzymes through various approaches. In the present thesis, we have elucidated the role of two mitochondrial proteins, which are part of mitochondrial import motor, as redox regulators and the effect of artificial antioxidants in maintenance of redox homeostasis under stress. A detailed description on importance of ROS in cellular signalling and disease progression has been included in Chapter I, which gives a preface for the work mentioned in this thesis. Chapter II to chapter V elucidates the main objectives of the present thesis, which are: 1. Identification of novel human mitochondrial regulators of redox homeostasis • Role of NEF in redox sensing (Chapter II) • Evolved function of J-like protein in ROS regulation (Chapter III) 2. Characterization of potential artificial antioxidants as redox therapeutics • Organo-selenium compounds as potential artificial antioxidants (Chapter IV) • Use of nanoparticles as a natural antioxidant mimics (Chapter V) Chapter II: Mitochondrial Hsp70 (mtHsp70) plays a critical role for the import of the precursor proteins. The import activity of mtHsp70 is attributed by cyclic binding and release of precursor proteins which in turn is regulated by co-chaperones J-proteins and nucleotide exchange factor (NEF). The affinity for substrate is governed by the binding of ADP or ATP at the N-terminal nucleotide binding pocket of mtHsp70. The affinity for substrate is higher in ADP bound state as compared to ATP bound state. mtHsp70 by its ATPase activity hydrolyze ATP (low-affinity state) to ADP (high-affinity state), which is replaced back to ATP by NEF thus maintaining the mtHsp70 cycle for protein import. In the present study, we have biochemically and functionally characterized GrpEL1 and GrpEL2 as a nucleotide exchange factor for mtHsp70. We observed that like their yeast ortholog Mge1, both the mammalian NEFs interacts with mtHsp70 and exchange ADP from ATP to maintain the cycle of mtHsp70. Interestingly, we observed that both the NEFs are part of human mitochondrial import motor and are recruited at the import motor as hetero-subcomplex. The formation of GrpEL1-EL2 hetero-subcomplex is important to maintain the stability of both the NEFs. In this study, we have elucidated that the interplay between the two NEFs governs organellar response towards oxidative stress. Chapter III: Redox imbalance generates multiple cellular damages leading to oxidative stress mediated pathological conditions such as neurodegenerative diseases, diabetes, ageing and cancer progression. Therefore, maintenance of ROS homeostasis is most important, that involves well-defined antioxidant machinery. In the present chapter, we have identified for first time a component of mammalian protein translocation machinery, Magmas, to perform a critical ROS regulatory function. Magmas overexpression has been reported in highly metabolically active tissues, cancer cells and tissues of developmental origin that are prone to oxidative damage. We found that Magmas regulates cellular ROS levels by controlling its production as well as scavenging. Magmas promotes cellular tolerance towards oxidative stress by enhancing antioxidant enzyme activity, thus preventing induction of apoptosis and damage to cellular components. Magmas enhances the activity of ETC-complexes, causing reduced ROS production. Our results suggest that J-like domain of Magmas is essential for maintenance of redox balance. The function of Magmas as an ROS sensor was found to be independent of its role in protein import, underlying its dual role in human mitochondria. The unique ROS modulatory role of Magmas is highlighted by its ability to increase cellular tolerance to oxidative stress even in yeast model organism. The cyto-protective capability of Magmas against oxidative damage makes it an important candidate for future investigation in therapeutics of oxidative stress related diseases. Chapter IV: The dysregulation of antioxidant machinery in oxidative stress mediated disorders lead to accumulation of excess ROS, highlighting the importance of artificial antioxidants. For the therapeutics of oxidative stress related disorders, artificial antioxidants have been used as combination redox therapy. In order to realize potent biocompatible antioxidants with minimum toxicity, we have utilized two approaches – synthesis of organic compounds and nanoparticle based enzyme mimetics. We have synthesized novel isoselenazoles with high glutathione peroxidase (GPx) and peroxiredoxin (Prx) activities, which provide remarkable cytoprotection to human cells, mainly by exhibiting antioxidant activities in the presence of cellular thiols. The cytotoxicity of the isoselenazoles is found to be significantly lower than that of ebselen, which is being widely clinically evaluated by several research groups for the treatment of reperfusion injuries and stroke, hearing loss, and bipolar disorder. The compounds reported in this study has the potential to be used as therapeutic agents for disorders mediated by reactive oxygen species.. Chapter V: Nanomaterials with enzyme-like properties have attracted significant interest, although limited information is available on their biological activities in cells. Here, we show that V2O5 nanowires (Vn) functionally mimic the antioxidant enzyme, glutathione peroxidase by using cellular glutathione as a co-factor. Although a bulk V2O5 is known to be toxic to the cells, the property is altered when converted into a nanomaterial form. The Vn nanozymes readily internalize into mammalian cells of multiple origins (kidney, neuronal, prostate, cervical) and exhibit robust enzyme-like activity by scavenging the reactive oxygen species, when challenged against intrinsic and extrinsic oxidative stress. The Vn nanozymes fully restore the redox balance without perturbing the cellular antioxidant defense, thus providing an important cytoprotection for biomolecules against harmful oxidative damage. Based on our findings, we envision that biocompatible Vn nanowires can provide future therapeutic potential to prevent ageing, cardiac disorders and several neurological conditions, including Parkinson’s and Alzheimer’s disease.

NMR spectroscopy is a very powerful technique for the characterization of structure and dynamics of a variety of systems starting from small organic molecules to large biological macromolecules. In solids, the study of protons becomes more interesting because they are very sensitive to inter-molecular packing and are directly involved in hydrogen-bonding and aromatic π-π interactions, etc. The present thesis is devoted essentially to utilizing information from proton resonances obtained using multinuclear and multiple-quantum approaches. The thesis has two parts. The first part deals with methodological developments in the area of solid-state NMR, relevant to the study of rigid powder samples as well as partially ordered liquid crystalline materials. Methods have been proposed to investigate the structure of small molecules at moderate spinning frequencies and thermotropic liquid crystals at static conditions. Proton detected heteronuclear experimental methods based on both first and second-order cross polarization at moderate and ultra-fast magic angle spinning rates are also proposed. The second part of the thesis deals with the application of both newly proposed and existing solid state NMR methods to the study of several biologically relevant systems. These include the study of several designed as well as naturally occurring peptides. The use of first-principles calculations based on GIPAW method for supporting the experimentally obtained results has also been made. The thesis is divided into five chapters. In the second chapter, a new pulse sequence to correlate Double Quantum (DQ) proton frequencies to carbon Single Quantum (SQ) chemical shifts in the solid state has been proposed. In this sequence, named as MAS-J-1H (DQ)-13C-HMQC, the correlation between 1H and 13C is achieved through scalar coupling, while the double-quantum coherence among protons is generated through dipolar couplings. This experiment is particularly suited for the study of 13C in natural abundance. The advantages of the technique with applications to alanine, histidine and a model liquid crystalline material have been demonstrated. The assignment of 13C spectra of partially ordered systems has also been considered. In this case the assignment of the spectrum is a major challenge due to the interplay of anisotropic order and chemical shift parameters. The DQ-SQ correlation experiment described in the thesis has been applied to a well known liquid crystal and also to a novel thiophene based liquid crystal and the local order parameters of the liquid-crystal have been obtained. The thesis also presents results on the azelaic acid -isonicotinamide co-crystal as well as the drug ibuprofen obtained by using novel methodologies. In the case of the former, the problem of overlap of resonances was overcome with the use of the REVERSE-CP approach to separate out the carbon attached protons from the rest of the protons. Subsequently, by the use of several combined approaches, the structural features were identified. A new heteronuclear correlation pulse sequence for solids under fast MAS conditions has also been tested. With low r.f powers, a second-order dipolar term mediated transfer of magnetization between I and S spin known as second order cross-polarization (SOCP) was exploited to obtain the entire spin system connectivity. Both carbon detected and proton detected experiments have been carried out and their utility evaluated. Similar approaches to shed light on the structure and conformation of a set of proline and pseudoproline based designed β-turn peptides that are used as templates for understanding protein folding have been made. Results of studies on two biologically important forms of the short-chain peptides namely glutathione reduced (GSH) and oxidized (GSSG) tripeptides are also presented.

Les glutathion transférases (GSTs) constituent une superfamille ubiquitaire d’enzymes multifonctionnelles impliquées dans les processus de détoxication cellulaire en métabolisant des substrats exogènes appelés xénobiotiques et dans le métabolisme secondaire. Pour cela, ces enzymes peuvent catalyser la conjugaison d’une molécule de glutathion (GSH) sur les composés ciblés ou simplement les lier au travers d’une fonction ligandine. Alors que la fonction de conjugaison est catalysée par les GSTs possédant une sérine ou une tyrosine comme résidu catalytique, certaines d’entre elles possèdent à la place une cystéine. Cette substitution change radicalement leurs propriétés puisque les GSTs à cystéine (Cys-GSTs) catalysent plutôt des réactions de déglutathionylation. Les Cys-GSTs sont retrouvées chez la plupart des organismes et sont réparties en plusieurs classes. Chez les plantes, on trouve principalement 4 classes : déshydroascorbate réductases (DHARs), GSTs Lambda (GSTLs), glutathionyl hydroquinone réductases (GHRs) et mPGES2 (microsomal prostaglandine E-synthase type 2). Alors que le rôle des DHARs semble clairement associé à la réduction du déshydroascorbate en ascorbate, la fonction physiologique des autres Cys-GSTs reste majoritairement inconnue. En combinant des approches moléculaires, cellulaires, biochimiques et structurales, l’analyse fonctionnelle des deux GHRs, des trois GSTLs et des trois DHARs chez l’arbre modèle Populus trichocarpa a été entreprise. De façon intéressante, les gènes GSTL et GHR sont majoritairement exprimés dans les fleurs, les fruits et les pétioles par rapport aux feuilles et aux racines. A l’inverse, les gènes DHAR sont principalement exprimés dans les feuilles. De plus, l’expression transitoire de protéines fusionnées à la GFP dans le tabac a montré que les GSTLs et les DHARs sont localisées dans les plastes, le cytoplasme et le noyau alors que les GHRs sont toutes plastidiales. Les études biochimiques et structurales effectuées à l’aide des protéines recombinantes et de substrats modèles ont montré que la plupart des Cys-GSTs possèdent des activités et des structures assez semblables. Cependant, bien que les GSTLs et les DHARs adoptent un repliement GST canonique classique proche de celui des GSTs Oméga fongiques et humaines, elles sont monomériques alors que les GSTs Oméga sont dimériques. Les GHRs sont particulières tant au niveau de leur interface de dimérisation unique qu’au niveau de leurs propriétés spécifiques de réduction de quinones glutathionylées. En résumé, la nature des substrats fixés par les Cys-GSTs (composés cycliques aromatiques) ainsi que les territoires d’expression de ces gènes et protéines suggèrent que ces protéines sont globalement impliquées dans la protection des plantes face aux contraintes environnementales via la modification, le stockage et/ou le transport de métabolites secondaires et autres composés antioxydants. Toutefois, l’objectif suivant sera de déterminer la nature exacte des substrats/ligands associés à chaque enzyme / Glutathione transferases (GSTs) constitute a ubiquitous superfamily of multifunctional enzymes involved in cellular detoxification processes by metabolizing exogenous substrates called xenobiotics and in secondary metabolism. For this purpose, these enzymes catalyze the conjugation of a glutathione molecule (GSH) onto target compounds or simply bind them through a ligandin function. While conjugation reactions are catalyzed by GSTs having a serine or a tyrosine as catalytic residues, other GSTs possess a cysteine. This substitution radically changes their properties since GSTs having a cysteine (Cys-GSTs) rather catalyze deglutathionylation reactions. Cys-GSTs are found in most organisms and are divided into several classes. In plants, there are mainly four classes: dehydroascorbate reductases (DHARs), Lambda GSTs (GSTLs), glutathionyl hydroquinone reductases (GHRs), and microsomal prostaglandin E-synthase type 2 (mPGES). While the role of DHARs seems clearly associated to the reduction of dehydroascorbate into ascorbate, the physiological function of other Cys-GSTs remains largely unknown. By combining molecular, cellular, biochemical and structural approaches, the functional analysis of the two GHRs, the three GSTLs and the three DHARs in the model tree Populus trichocarpa was undertaken. Interestingly, GSTL and GHR genes are predominantly expressed in flowers, fruits and petioles compared to leaves and roots. Conversely, the DHAR genes are mainly expressed in leaves. Furthermore, transient expression of proteins fused to GFP in tobacco showed that GSTLs and DHARs are localized in plastids, cytoplasm and nucleus while GHRs are all localized in plastids. Biochemical and structural studies using recombinant proteins and model substrates showed that most Cys-GSTs have similar activities and structures. However, although GSTLs and DHARs adopt a canonical GST folding similar to that of fungal and human Omega GSTs, they are monomeric whereas Omega GSTs are dimeric. GHRs are particular owing to their unique dimerization interface and to their specific capacity to reduce glutathionylated quinones. In summary, the nature of the substrates bound by Cys-GSTs (heterocyclic aromatic compounds) as well as the expression territories of these genes and proteins, suggest that they are generally involved in the protection of plants towards environmental constraints through the modification, storage and/or transport of secondary metabolites and other antioxidants. However, the next goal will be to determine the exact nature of the substrates/ligands associated with each enzyme

La compréhension des mécanismes de défense mis en place lors de la résistance des plantes vis-à-vis d'agents pathogènes a pour objectif de proposer des alternatives à l'utilisation de produits phytosanitaires utilisés en agriculture. Dans une première partie, nous avons étudié les mécanismes moléculaires impliqués dans la résistance induite aux pathogènes par l'acide β-aminobutyrique (BABA) chez la vigne. En effet, cet acide aminé non protéique favorise un état physiologique particulier, appelé potentialisation, dans lequel la plante est capable de mobiliser plus rapidement et/ou plus intensément ses réactions de défense en réponse à un stress. Contrairement aux éliciteurs comme les oligogalacturonates (OG), nous avons montré que le BABA seul n’induisait pas les événements précoces de signalisation sur suspensions cellulaires de vigne, tels que les variations de la concentration en calcium cytosolique libre ([Ca2+]cyt), la production de monoxyde d’azote (NO), la production d’H2O2, la phosphorylation de MAPkinases, ni l’expression de gènes de défense. Seules la production d’H2O2 et l’expression plus intense du gène RbohD codant une NADPH oxydase sont potentialisées par le BABA dans les suspensions cellulaires élicitées par les OG. In planta, le BABA potentialise également une production d’H2O2 en réponse à l’infection par l’oomycète Plasmopara viticola. L’utilisation d’un inhibiteur de NADPH oxydase abolit complètement cette production d’H2O2 et bloque partiellement la résistance induite par le BABA. Nous montrons donc que la potentialisation de la production d’H2O2 dépendante d’une NADPH oxydase contribue à l’établissement de la résistance induite par le BABA chez la vigne. Une deuxième partie a permis d’appréhender les événements cellulaires impliqués dans la résistance des plantes en se focalisant sur le mutant pad2 (phytoalexin deficient) d’Arabidopsis thaliana. Ce mutant présente une sensibilité accrue à différents pathogènes et contient un taux de glutathion de l’ordre de 20 % par rapport à l’écotype sauvage. Nous avons tout d’abord montré que le faible taux de glutathion dépendait d’une quantité réduite de la première enzyme de sa biosynthèse, la glutamate-cystéine ligase. Le glutathion étant impliqué dans la mise en place des réactions de défense, nous avons tenté de définir le lien entre la déficience en glutathion et la sensibilité de pad2 aux pathogènes. Nous avons tout d’abord montré que pad2 possédait un état redox du glutathion plus oxydé que le sauvage. Une analyse transcriptomique à l’état basal a révélé que la plupart des gènes différentiellement exprimés étaient réprimés chez pad2. Parmi ces gènes, certains codent des protéines impliquées dans les flux d’ions qui pourraient déréguler la dépolarisation membranaire. Nous avons ainsi confirmé que la dépolarisation de la membrane plasmique est amoindrie chez pad2 en réponse aux OG. De plus, des événements en aval tels que la production d’H2O2 et la production de NO sont également plus faibles chez le mutant par rapport au sauvage. Cette absence de la production d’H2O2 a également été spécifiquement observée sur plantes pad2 infectées par l’oomycète Phytophthora brassicae. Il en résulte un développement accru du pathogène corrélé à une absence de réponse hypersensible, une mort cellulaire localisée normalement observée dans le cas du sauvage résistant. En réponse aux OG ou à l’infection par P. brassicae, les analyses transcriptomiques font ressortir un fort enrichissement de gènes relatifs à la dégradation des protéines chez pad2. De manière globale, nos résultats suggèrent que la déficience en glutathion chez pad2 pourrait profondément modifier le turn-over des protéines, perturbant ainsi la signalisation cellulaire et les réponses biologiques associées. / Alternative strategies are required to reduce pesticide input into the environment for effective and sustainable plant protection. One solution is the activation of plant basal resistance that relies on the application of resistance inducer molecules. In the first part of this study, we analyzed the mode of action of β-aminobutyric acid (BABA), a non-protein amino acid, in the grapevine induced resistance. BABA confers a physiological state, called priming, during which plants are able to mobilize better and/or more rapidly defense responses to biotic or abiotic stress. Unlike oligogalacturonides (OG), we showed that BABA did not induce early signaling events in grapevine cells such as variations of cytosolic free calcium concentration, H2O2 and nitric oxide production, MAPkinase phosphorylation, nor the expression of defense-related genes. Among them, only H2O2 production and the expression of RbohD gene, which encodes a NADPH oxidase, are primed by BABA in OG-treated cells. Moreover, BABA-treated plants display a stronger accumulation of H2O2 in response to the oomycete Plasmopara viticola. Application of an NADPH oxidase inhibitor completely abolishes this H2O2 production and leads to a reduction of BABA-induced resistance against P. viticola. These data suggest that the priming of an NADPH oxidase-dependent H2O2 production contributes to BABA-induced resistance in grapevine. The second part consisted to analyze molecular events involved in plant resistance by using the pad2 (phytoalexin deficient) mutant of Arabidopsis thaliana which is susceptible to a broad range of pathogens. We showed that the glutathione depletion depends on the low amount of glutamate-cysteine ligase protein, the first enzyme involved in its biosynthesis. We studied molecular events, which are involved in defense mechanisms, to understand the impact of the glutathione content on pad2 susceptibility. Our results show that the redox state of glutathione is more oxidized in pad2 than in wild type Col-0. Since cellular redox state change is known to regulate gene expression, a basal transcriptome analysis has been performed in pad2 and wild type plants. Interestingly, most of the identified genes in pad2 are down-regulated, some of them encoding proteins involved in ion fluxes. As expected, the plasma membrane depolarization and events downstream like H2O2 and NO production are impaired in pad2 in response to OG. During infection with Phytophthora brassicae, the lack of H2O2 production is concomitant with an absence of the hypersensitive response, a localize cell death observed in the resistant wild type. After OG treatment or P. brassicae infection, microarray analysis brings out genes related to protein machinery including degradation in pad2. Taken together, these data suggest that the depletion of glutathione has an impact on protein turn-over which disturbs cell signaling events and related biological responses.