Avaliamos o efeito da RCIU induzida por glicocorticoides sobre a regulação da expressão de miRNAs no fígado de ratos albinos. Animais expostos intrauterinamente à dexametasona apresentaram menor peso ao nascer, fígados relativamente menores dos que os observados em animais controle e menores concentrações hepáticas de PCNA. Em longo prazo, os animais DEX desenvolveram distúrbios metabólicos caracterizados por intolerância à glicose e maior potencial gliconeogênico no desmame e na vida adulta. Ao avaliarmos o perfil de miRNAs no fígado, detectamos aumento da expressão de todo o cluster do miR-322 no período perinatal, com menor conteúdo de alvos preditos desses transcritos (AKT3, CCND1 e INSR). A superexposição ao miR-322-5P reduz a taxa de proliferação em linhagens celulares de hepatocarcinoma e a expressão dos alvos observados no fígado dos animais estudados. Propomos um link entre a expressão aberrante do miR-322-5P e a reduzida taxa de proliferação detectada no tecido hepático em desenvolvimento, contribuindo para o estabelecimento do fenótipo em longo prazo. / We evaluated the effects of glucocorticoid induced IUGR on the expression of miRNA on Wistar rat livers. Dexamethasone (DEX) treated animals were lighter and had smaller liver weight:body weight ratio when compared to control animals. Furthermore, liver PCNA expression was downregulated, sugesting a reduction on cell proliferation rate. In the long term, DEX animals developed metabolic disturbances such as glucose intolerance e increased gluconeogenesis rate in a fast state. The analysis of miRNA expression profile showed an upregulation of miR-322 cluster on perinatal period, together with a downregulation of three putative targets: Akt3, CCND1 and INSR. Later, we used in vitro studies to prove that overexpression of miR-322-5P arrests cell cycle and impairs proliferation of HEPG2 cells as well as it downregulates the predicted targets. Based on this data, we suggest a link between overexpression of miR-322-5P and impaired proliferation rate on the developing liver, which affects the phenotype in the long term.

L’objectif de mon projet principal de thèse est de déterminer la fonction biologique d’un lncARN conservés chez le zebrafish que nous avons appelé libra. La séquence de libra étant hautement homologue à la région 3’UTR de la protéine Nrep. Ces deux transcrits, libra et Nrep, contiennent en effet un site de liaison au miARN profondément conservé et inhabituellement complémentaire au miR-29. En utilisant à le modèle souris et les cellules murines, nous avons décrypté la relation régulatrice entre ce transcrit conservé dans l’évolution des vertébrés et la voie métabolique des miARN. Nous avons montré que Nrep limite le domaine d’expression de miR-29 au cervelet, et qu’il le déstabilise en rognant sa séquence. Notre travail révèle donc le premier exemple de dégradation endogène ciblée des miARN (ou TDMD). De plus, un ensemble d’expériences in vivo sur les modèles zebrafish et souris, nous a permis de démontrer que libra et Nrep contrôlent tout les deux le comportement animal. Via la perturbation génétique du site de liaison au miARN de Nrep murin, nous avons observé que ce gène régule le dosage du miR29 de part son site de liaison aux miARN, et que cette régulation est nécessaire à un comportement animal normal. Dans la seconde partie de ma thèse, je décris une stratégie exploré afin de déréguler les lncARN de la manière la moins invasive possible. Les lncARN sont actuellement neutralisés par des approches qui introduisent de vastes changements de séquence au niveau génomique. Nous avons donc développer une stratégie in vivo, appliquée au zebrafish, qui inactive les lncARN via l’insertion génomique d’une séquence ribozyme autoclivante ou d’un signal polyA prématuré. / The goal of my main thesis project was to determine the biological function of a deeply conserved zebrafish long noncoding RNAs (lncRNA) which we called libra. libra shows sequence similarity with the 3'UTR of the NREP a protein coding transcript. Both libra and Nrep contain a deeply conserved and unusually complementary microRNA (miRNA) binding site for miR-29. Using both the mouse model and mouse cell lines, we deciphered the regulatory relationship between this conserved transcript and the miRNA pathway. We showed that Nrep restricts the spatial expression domain of miR-29 in the cerebellum and that it destabilizes miR-29 through 3' trimming. Until now, only viral transcripts and artificial reporters engineered to contain highly complementary miRNA binding sites have been shown to regulate miRNAs in this fashion. Thus, our work uncovers the first example of endogenous target-directed miRNA degradation (TDMD). In addition, through a set of in vivo experiments in zebrafish and mouse, we showed that both libra and Nrep control normal animal behavior. By genetically disrupting the miR-29 binding site in Nrep in mouse, we showed that Nrep regulates miR-29 dosage through its miR-29 site and controls animal behavioral. In a second part of my thesis I describe a strategy to genetically downregulate lncRNAs in a minimally invasive manner. Approaches to knock-out lncRNAs that do not introduce vast sequence changes at the genomic level have not been adequately developed yet. I present our in vivo strategy applied to the zebrafish model using a genomic knock-in of a self-cleaving ribozyme sequence and a premature poly(A) signal to knock-out lncRNAs.

Coordenação de Aperfeiçoamento de Pessoal de Nível Superior / O objetivo deste trabalho foi estabelecer um modelo empregando-se ferramentas de regressão multivariada para a previsão do teor em ésteres metílicos e, simultaneamente, de propriedades físico-químicas de misturas de óleo de soja e biodiesel de soja. O modelo foi proposto a partir da correlação das propriedades de interesse com os espectros de reflectância total atenuada no infravermelho médio das misturas. Para a determinação dos teores de ésteres metílicos foi utilizada a cromatografia líquida de alta eficiência (HPLC), podendo esta ser uma técnica alternativa aos método de referência que utilizam a cromatografia em fase gasosa (EN 14103 e EN 14105). As propriedades físico-químicas selecionadas foram índice de refração, massa específica e viscosidade. Para o estudo, foram preparadas 11 misturas com diferentes proporções de biodiesel de soja e de óleo de soja (0-100 % em massa de biodiesel de soja), em quintuplicata, totalizando 55 amostras. A região do infravermelho estudada foi a faixa de 3801 a 650 cm-1. Os espectros foram submetidos aos pré-tratamentos de correção de sinal multiplicativo (MSC) e, em seguida, à centralização na média (MC). As propriedades de interesse foram submetidas ao autoescalamento. Em seguida foi aplicada análise de componentes principais (PCA) com a finalidade de reduzir a dimensionalidade dos dados e detectar a presença de valores anômalos. Quando estes foram detectados, a amostra era descartada. Os dados originais foram submetidos ao algoritmo de Kennard-Stone dividindo-os em um conjunto de calibração, para a construção do modelo, e um conjunto de validação, para verificar a sua confiabilidade. Os resultados mostraram que o modelo proposto por PLS2 (Mínimos Quadrados Parciais) foi capaz de se ajustar bem os dados de índice de refração e de massa específica, podendo ser observado um comportamento aleatório dos erros, indicando a presença de homocedasticidade nos valores residuais, em outras palavras, o modelo construído apresentou uma capacidade de previsão para as propriedades de massa específica e índice de refração com 95% de confiança. A exatidão do modelo foi também avaliada através da estimativa dos parâmetros de regressão que são a inclinação e o intercepto pela Região Conjunta da Elipse de Confiança (EJCR). Os resultados confirmaram que o modelo MIR-PLS desenvolvido foi capaz de prever, simultaneamente, as propriedades índice de refração e massa específica. Para os teores de éteres metílicos determinados por HPLC, foi também desenvolvido um modelo MIR-PLS para correlacionar estes valores com os espectros de MIR, porém a qualidade do ajuste não foi tão boa. Apesar disso, foi possível mostrar que os dados podem ser modelados e correlacionados com os espectros de infravermelho utilizando calibração multivariada / In the present work, a model that uses multivariate regression tools was proposed to predict both contents of methyl esters and physical-chemical properties of soybean oil -soybean biodiesel blends. The model was proposed from the correlation of the properties of interest with the attenuated total reflectance infrared spectra of the samples (ATR/MID-FTIR). The composition of the blends (methyl esters content) was determined by high performance liquid chromatography (HPLC), which can be seen as an alternative technique to the standard reference methods based on gas chromatography (EN 14103 and EN 14105). The selected physicochemical properties were refractive index, density, and viscosity. For the study, 11 mixtures were prepared with different proportions of soybean biodiesel and soybean oil (0-100 % wt of soybean biodiesel) in five replications totalizing 55 samples. The infrared spectra were acquired in the range 3801-650 cm-1. The spectra were submitted to the multiplicative signal correction (MSC) and then to mean centering (MC) preprocessing. The properties of interest were submitted to auto scale. It was then applied principal component analysis (PCA) for the purpose of reducing the dimensionality of the data, and detected the presence of outliers. When the outliers were detected, the samples were discarded. The original data were submitted to Kennard-Stone algorithm dividing them into a calibration set to build the model and the validation to verify its reliability. The results showed that the model proposed by PLS2 (Partial Least Squares) was able to adjust well to the refractive index data and density, can be observed a random behavior of errors, indicating the presence of homoscedasticity in residual values, in other words, the constructed model presented a forecast of capacity for specific mass properties and refractive index with 95% confidence. The accuracy of the model was evaluated by estimating the regression parameters which are the slope and the intercept by EJCR (Joint Region Confidence Ellipse). The results confirmed that MIR-developed PLS model was able to predict both the refractive index and specific gravity properties. For contents of methyl esters via liquid chromatography the model showed a lower adjustment of the data. Nevertheless, it was possible to demonstrate that the results obtained from methyl esters by HPLC analytical method can be modeled and correlate them with infrared spectra using multivariate calibration

Esta dissertação tem como objetivo central reconstituir a trajetória do poeta brasileiro Nilton Rosa da Silva, enfocando seu período como exilado político no Chile, entre 1971 e 1973. Em Santiago, Nilton da Silva estudou castelhano no Instituto Pedagógico da Universidade do Chile, publicou o livro de poesias Hombre América, e passou a militar na Frente de Estudiantes Revolucionarios (FER), um dos grupos estudantis do Movimiento de Izquierda Revolucionaria (MIR). O jovem brasileiro seria morto aos 24 anos de idade, em junho de 1973 (três meses antes do golpe de Estado liderado por Augusto Pinochet), por membros da Frente Nacionalista Patria y Libertad, milícia de ultradireita que lutava pela derrubada do presidente Salvador Allende. Defendendo a revolução armada para colocar o Chile no caminho do socialismo, mesmo durante o governo democrático da Unidad Popular (UP), o MIR era visto com reservas por setores moderados da esquerda. Ao mesmo tempo, porém, a organização procurava – desde fora – radicalizar os partidos da UP. A partir da análise da vida de Nilton da Silva, e das repercussões da sua morte, é possível discutir as disputas entre as estratégias “rupturista” e “sistêmica” da esquerda chilena durante o governo Allende, as possibilidades de acordo que se desenharam entre esses setores, e as maneiras como o MIR procurou conquistar esferas mais amplas para sua retórica em favor da necessidade de pegar em armas. Os usos políticos do assassinato de Nilton da Silva estão relacionados a essa busca: através da análise das apropriações do episódio, apreende-se o uso imediato que o MIR fez de sua morte, tentando construir o jovem militante como um mártir revolucionário em um período de crescente temor frente a um golpe reacionário. Discute-se, ademais, a forma como a vida e a morte de Nilton da Silva seriam eventualmente ressignificada nas décadas seguintes, passando a incluí-lo em uma narrativa mais ampla, ao lado de outras vítimas das ditaduras brasileira e chilena. / This thesis aims to recreate the trajectory of the Brazilian poet Nilton Rosa da Silva, focusing on his time as a political exile in Chile, from 1971 to 1973. In Santiago, Silva studied Spanish at the Pedagogical Institute of the University of Chile, published his poetry book Hombre América, and became a member of the Revolutionary Students Front (FER), one of Revolutionary Left Movement’s (MIR) groups in the student movement. The young Brazilian was killed at the age of 24 in June 1973 (three months prior to the coup led by Augusto Pinochet), by members of the Fatherland and Liberty Nationalist Front, a far-right militia that fought to overthrow the president, Salvador Allende. Advocating the need of an armed revolution to place Chile in the path of Socialism, even during the Popular Unity’s (UP) democratic administration, MIR was seen with hesitations by the moderate left. At the same time, however, MIR sought to radicalize the UP parties. By analyzing Nilton da Silva’s life and the impact of his death, it is possible to discuss the disputes between the “rupturist” and “systemic” strategies of the Chilean left during the Allende administration, the chances of agreement between these sectors, and the ways in which MIR sought to conquer wider segments to its rhetoric in favor of the need to take up arms. The political uses of Nilton da Silva’s murder are related to this goal: by examining the appropriation of his death, we are able to see the immediate use that MIR did of this episode, trying to construct the young activist as a revolutionary martyr in a period of growing fear towards a reactionary coup. This work discusses, moreover, how the life and death of Nilton da Silva would eventually be re-signified in the following decades, now being included in a broader narrative, along with other victims of the Brazilian and Chilean dictatorships.

La Bruton tyrosine kinase ou Btk est une protéine dont le rôle dans la maturation des lymphocytes B est connu depuis plusieurs années. Par contre, son rôle dans le contrôle de l’immunité innée est moins établi. Nous avons montré que, en réponse à la voie des Toll like Receptors ou TLRs, Btk régule la stabilité de l’ARN messager du TNF-α par l’intermédiairede la protéine TTP ou Tristétraproline. Par ailleurs, nous avons montré que l’expression d’un microARN, le miR-346, régulait négativement la protéine Btk et donc la synthèse de TNF-α. L’amplification de l’expression de ce miR-346 par transfection permet d’avoir un effet anti-TNF-α et anti-Btk interessant notamment dans le modèle cellulaire de la polyarthrite rhumatoïde. Enfin, nous avons montré que, en réponse au TLRs, la modulation de l’expression du TNF-α en fonction de l’état de méthylation de l’ADN et d’acétylation des histones dépendait directement de l’expression du couple miR-346 et Btk. Btk est donc une protéine charnière dans le contrôle de l’inflammation par les mécanismes épigénétiques que sont les miARNs, la méthylation de l’ADN et l’acétylation des histones. Sur le plan thérapeutique, l’inhibition de cette protéine par ces différents mécanismes de régulation semble donc être très interessante, à la fois dans les maladies inflammatoires et néoplasiques. / Bruton tyrosine kinase, or Btk, is a protein whose role in the maturation of B cells has been known for several years. However, its role in the control of innate immunity is less established. We have shown that, in response to Toll like Receptors pathway or TLRs, Btk regulates the stability of the mRNA of TNF-α via the TTP or Tristetraprolin protein. Furthermore, we showed that the expression of microRNA, the miR-346, negatively regulated the Btk protein and thus the synthesis of TNF-α. Upregulation of miR-346 by transfection act as an anti-TNF-α and anti-Btk drugs, especially in the cellular model of rheumatoid arthritis.Finally, we showed that, in response to TLRs, the modulation of the expression of TNF-α according to the state of DNA methylation and histone acetylation depended directly on crosstalk beetween miR-346 and Btk. Btk is a key protein in the control of inflammation by epigenetic mechanisms such as miRNAs, DNA methylation and histone acetylation. As therapeutic interest, inhibition of Btk by those different regulatory mechanisms seems to be very interesting, both in inflammatory and neoplastic diseases.

Submitted by Geandra Rodrigues (geandrar@gmail.com) on 2018-07-13T14:13:42Z No. of bitstreams: 1 carolinacarvalhoramosviana.pdf: 2071193 bytes, checksum: ced9ed600a8408dfa84aa8a442fdff6f (MD5) / Approved for entry into archive by Adriana Oliveira (adriana.oliveira@ufjf.edu.br) on 2018-07-16T17:33:13Z (GMT) No. of bitstreams: 1 carolinacarvalhoramosviana.pdf: 2071193 bytes, checksum: ced9ed600a8408dfa84aa8a442fdff6f (MD5) / Made available in DSpace on 2018-07-16T17:33:13Z (GMT). No. of bitstreams: 1 carolinacarvalhoramosviana.pdf: 2071193 bytes, checksum: ced9ed600a8408dfa84aa8a442fdff6f (MD5) Previous issue date: 2018-03-28 / Este trabalho tem como objetivo geral a utilização da Espectroscopia na região do Infravermelho Médio, aliada à calibração multivariada (PCA e PLS) para caracterizar e quantificar a composição majoritária de fórmulas infantis. Foram avaliadas 20 marcas comercializadas em Juiz de Fora (MG), de quatro grandes indústrias do ramo. Determinou-se a composição majoritária das amostras (teor de lipídios, proteína verdadeira, carboidratos, umidade, sólidos totais e cinzas) por meio de métodos físico-químicos, em duplicata, de acordo com metodologias oficiais de análise, sendo que os resultados, em geral, atendem a legislação vigente. Em acréscimo, foi realizada a avaliação espectroscópica das formulações, na região MIR de 4000 cm-1 a 400 cm-1. Utilizando-se de ferramentas estatísticas, foi possível interpretar os espectros gerados e caracterizar a composição das fórmulas infantis testadas, em comparação às principais alegações descritas no rótulo e da literatura. As proposições sugeridas foram confirmadas pelo comportamento das amostras destas frente à Análise dos Componentes Principais (PCA), e a partir disto, pode-se dizer que a espectroscopia FT-MIR-ATR foi capaz de caracterizar as diferentes formulações testadas, quando aliada a estatística multivariada. Já em relação à Regressão por Mínimos Quadrados Parciais (PLS), somente foi encontrada correlação entre os dados físico-químicos e os espectros MIR no intervalo entre 1400 cm-1 e 1000cm-1, e por isso, este foi utilizado para as previsões dos valores analíticos. Por ser a região característica da absorção de carboidratos, o modelo apresentou os melhores resultados na predição do teor deste componente, com perfil de curva de calibração e ao mesmo tempo, apresentou predições ruins para o restante dos atributos testados. Sugere-se que o modelo possui potencial para as predições físico-químicas, em especial para carboidratos, caso sejam efetuadas curvas de calibração para este tipo de matriz alimentar. / This work focuses on the use of Fourier Transformed Mid Infrared Spectroscopy (FT-MIR) coupled to Attenuated Total Reflectance (ATR), combined with multivariate calibration as Principal Component Analysis (PCA) and Partial Least Squares (PLS) to characterize and quantify the majority composition of infant formulas. Twenty trademarks marketed in Juiz de Fora (MG) were evaluated from four different industries. The majority composition of the samples (lipid content, true protein, carbohydrates, moisture, total solids and ashes) was determined by physicochemical methods, in duplicate, according to official analysis methodologies. The results, in general, comply with current legislation. On the other hand, the spectroscopic evaluation of the formulations was performed in the MIR region from 4000 cm-1 to 400 cm-1. Using statistical tools, it was possible to interpret the generated spectra and characterize the composition of the infant formulas tested, in comparison to the main claims described in the labels and in the literature. The suggested propositions were confirmed by the behavior of these samples when compared to PCA. It can be said that FT-MIR-ATR spectroscopy was able to characterize the different formulations tested, when allied to multivariate statistics. In relation to the Regression by PLS, only a correlation was found between physicochemical data and MIR spectra in the interval between 1400 cm-1 and 1000 cm-1, and therefore, it was used for the predictions of the analytical values. Because it is the characteristic region of carbohydrate absorption, the model presented the best results in the prediction of the content of this component, with a calibration curve profile and at the same time presented bad predictions for the rest of the attributes tested. It is suggested that the model has potential for physicochemical predictions, especially for carbohydrates, if calibration curves are made for this type of food matrix.

No description available.

The glial cells of the brain and the peripheral nervous system retain the capacity to divide and proliferate throughout the lifespan of an individual and thereby have the propensity to give rise to the most adult neurological tumours. Among them, the tumours which arise from different kinds of glial cells are referred to as gliomas. Of the various types of gliomas, astrocytomas are the most common central nervous system neoplasms which make upto 60% of all the primary brain tumours. Being the most prevalent type, the WHO classifies them into grades ranging from I to IV based on their intensity of malignancy. Grade IV astrocytoma or Glioblastoma (GBM) is considered to be the most malignant form with a median survival of 14.6 months, in spite of all therapeutic modalities. GBM is further classified as primary and secondary GBM. Primary GBM manifests de novo without any early history of pre-malignant lesions, on the other hand secondary GBM arises progressively from lower grades over a period of 5-10 years. Like other malignancies, GBM also arises from various genetic and epigenetic variations. Epigenetic variations include all such mitotically and meiotically heritable traits that do not involve changes in DNA sequence. There are three major areas of epigenetics - DNA methylation, histone modifications and non-coding RNAs which are known to have profound effects on gene expression. A lot being known about the genetic derailments in GBM, in this study we looked into the epigenetic aspects of GBM. In our lab, we have carried out various high throughput studies, which unveiled the distorted landscape of DNA methylation and miRNA expression in GBM. This indicates that, in addition to the genetic mechanisms of gene alterations like mutations, copy number aberrations, protein coding genes are also affected by changes in methylation as well as by miRNA misregulation. The study has been divided into two parts. Part one of the study deals with the identification of chromobox homolog 7 (Cbx7), as a hypermethylated and downregulated gene in GBM. More importantly, Cbx7 is a member of the polycomb repressive complex and brings about its function through chromatin modifications. Here we have investigated the role of Cbx7 in gliomagenesis, and why it has to be silenced by methylation for tumorigenesis to ensue. In part two, we elucidated two unique ways of miRNA regulation in GBM. In the first section, we identified miR-326 as a PI3 kinase regulated miRNA and demonstrated its tumour suppressive role in GBM. In the other section, we analysed the copy number aberration data from TCGA and identified miR- 4484 as a miRNA subjected to deletion in GBM. We further went ahead to demonstrate its growth suppressive role in GBM. Part 1: Epigenetic regulation of the chromatin modifier Cbx7; chromobox homolog 7 DNA methylation is involved in the normal cellular control of expression and thereby plays a crucial role in maintaining the homeostasis of the cell. The phenomenon of DNA methylation keeps the various loci of the genome such as the germline specific genes and the repetitive transposable elements silenced, whereas the tumour suppressors and other growth modulator genes are spared from the methylation induced gene repression. One of the important steps that promote tumorigenesis is aberrant hypermethylation, which leads to the silencing of tumour-suppressor genes. Another important epigenetic phenomenon that affects the transcriptibility of the genome is histone modifications, which control the accessibility of the chromatin to the transcriptional machinery. In this section, we identified Cbx7, which happens to be an essential component of the chromatin modifying machinery, as an epigenetically regulated gene in GBM. We observed from the methylation array carried out in our lab, that Cbx7 was one of the highly methylated genes. We also validated that Cbx7 is downregulated in GBM and the same observation was further corroborated from other data sets. The hypermethylated state of Cbx7 was confirmed by DNA bisulphite sequencing and the expression levels of Cbx7 also got alleviated after 5-Aza-2′-deoxycytidine treatment, which is a DNA methylation inhibitor. This indicated that the down regulation of Cbx7 could be attributed to the methylation of its promoter region. In order to figure out the role of Cbx7 in GBM, we carried out transcriptome analysis of Cbx7 overexpressing cells compared to vector control condition by RNA sequencing. Gene ontology analysis revealed a significant enrichment of pathways involved in cell cycle, migration and invasion like processes. In fact, the exogenous overexpression of Cbx7 leads to cell death, reduced colony formation, retarded migration and invasion of cells. In order to explain the above phenotypes brought about by the exogenous expression of Cbx7, we further examined the RNA sequencing data and observed that many of the top most downregulated genes in Cbx7 overexpression state belonged to the Hippo signaling pathway. The effectors of the Hippo pathway, YAP and TAZ which essentially antagonize the pathway activity, are well known for their role in proliferation, migration and invasion in cancer. So we carried out a Gene Set Enrichment Analysis (GSEA) and found that there was a significant negative enrichment of YAP/TAZ targets in the Cbx7 regulated gene set. We validated some of these targets that were downregulated by Cbx7 overexpression. One of the most downregulated genes that we validated was Connective Tissue Growth Factor (CTGF), which also happens to be a bonafide target of YAP/TAZ. Independent downregulation of CTGF also resulted in reduced migration, thereby phenocopying the effects as were produced by Cbx7 overexpression. Moreover, we also observed that SAPK/JNK was the only kinase whose activity was abolished upon Cbx7 overexpression. Since CTGF is known to activate SAPK/JNK, we assessed the SAPK/JNK activity upon CTGF silencing. We found that levels of phospho-SAPK/JNK were significantly reduced in CTGF silenced condition. In addition to that, the inhibition of the SAPK/JNK by synthetic inhibitor also hampered the migration ability of the cells. We were also able to rescue the loss of migratory potential of glioma cells by the exogenous overexpression of CTGF in Cbx7 stable background. A similar rescue was also achieved by the overexpression of a constitutively active form of SAPK/JNK. This indicates that Cbx7 activates Hippo pathway to inhibit YAP/TAZ dependent transcription, resulting in the downregulation of CTGF, thereby inhibiting CTGF mediated activation of SAPK and thus resulting in the inhibition of glioma cell migration. PART 2: ROLE OF MIRNAS IN GLIOMA DEVELOPMENT AND PROGRESSION miRNAs are a class of small non-coding RNAs that are not translated into functional proteins but still contribute to numerous cellular processes, thereby adding yet another realm of regulation and control. miRNAs bring about gene regulation at the post-transcriptional level, either by degrading the mRNA or by translational repression and in this manner fine tune the expression of protein coding genes. miRNAs are often located in the most fragile sites of the genome which exposes them to grave genetic alterations, thus providing a circumstantial evidence of their etiological role in tumorigenesis. In a malignant state, miRNAs have been found to play pivotal roles in cellular transformation by altering various cellular phenotypes. Owing to their participation in diverse cellular functions, miRNAs have gained a strong foothold in gene regulation. Though a lot has been deciphered about the functional aspect of miRNAs, not much is known about the precise mechanisms which lead to their misregulation and therefore demands in-depth study. The expression of miRNAs can be modulated by a variety of genetic and epigenetic mechanisms. Section I: Role of miR-326 – a PI3 kinase regulated miRNA, in gliomagenesis The TCGA group in the year 2008 identified three major pathways which go disarray in GBM. These include the pro-tumorigenic receptor tyrosine kinase (RTK) pathway, and the p53 and the pRB tumour-suppressive pathways. The RTK signalling includes the PI3 kinase pathway, which is pivotal in gliomagenesis and many other cancers. This directed us to elucidate the set of miRNAs which are controlled by the aberrant functioning of the PI3 kinase pathway. We used synthetic inhibitor LY294002 to abrogate the PI3 kinase signalling and examined the miRNA profile in two glioma cell lines U87 and U251, which have an activated PI3 kinase pathway. Indeed the abrogation of the PI3 kinase pathway resulted in the modulation of a wide array of miRNAs. We validated miR-326 as one of the miRNAs that was upregulated upon PI3 kinase pathway abrogation. Furthermore, we observed that miR-326 was a down regulated miRNA in GBM and different glioma cell lines, as well as in many other publicly available data sets. We also observed that miR-326 is an intragenic miRNA and its host gene Arrestin β1 (ARRB1) also exhibited similar upregulation upon PI3K pathway inhibition. Over-expression of miR-326 resulted in various anti-tumorigenic affects like reduced proliferation, reduced migration and colony suppression. In order to find the targets of miR-326, we analysed the transcriptome by RNA sequencing upon pre-miR-326 transfection. We shortlisted and validated some of the genes which were getting regulated through miRNA over-expression and also explain the functional role of miR-326. Section II: Role of miR-4484 – a copy number deleted miRNA, in gliomagenesis In the TCGA study mentioned above, it was also unfurled that there are many genes in the RTK, p53 and pRB signalling pathways which are made dysfunctional through gene deletions and amplifications. We envisaged whether it is only the protein coding genes which are subjected to such regulations or the non-coding genes like miRNAs as well. In this pursuit, we identified miR-4484 as one of the miRNAs located in the deleted region of uroporphyrinogen III synthase (UROS) gene in the chromosome 11 of the GBM genome. As conceived, miR-4484 was observed to be a downregulated miRNA in association with its host gene UROS. We further elucidated that the downregulation was due to the co-deletion of a locus harbouring both the protein coding gene and the miRNA. In addition, upon over-expression of miR-4484, we observed reduced migration and colony formation, indicating its role as a tumour–suppressor. For seeking the targets of miR-4484, we extracted RNA from miR-4484 over-expression condition and subjected it to RNA sequencing. We shortlisted and validated some of the genes which were getting regulated through miRNA over-expression and possibly explain the functional role of miR-4484.

La leucémie myéloïde chronique (LMC) est une hémopathie maligne causée par l‘apparition du chromosome Philadelphie dans la cellule souche hématopoïétique (CSH), conduisant à l‘expression de la protéine de fusion BCR-ABL1. L‘activité tyrosine kinase dérégulée de cette oncoprotéine provoque l‘activation de plusieurs voies de signalisation critiques dans la leucémogenèse. Si les inhibiteurs de tyrosine kinase (ITK) ciblant BCR-ABL1 représentent des traitements dans l'ensemble très efficaces, plusieurs études montrent que les cellules leucémiques les plus immatures de la moelle osseuse y sont insensibles. Cette thèse propose de compléter les connaissances relatives aux effets de BCR-ABL1 dans la cellule, et plus généralement aux propriétés des CSH de LMC. Notre intérêt s‘est focalisé sur le rôle potentiel des microARN. Dans un premier travail, nous nous sommes intéressés à l‘effet de l‘activité BCR-ABL1 sur le protéome et sur l‘expression des microARN dans la lignée cellulaire K562. Les résultats montrent que BCR-ABL1 régule l'expression d'un microARN fréquemment surexprimé dans les cancers, miR-21. Cet effet dépend du facteur de transcription STAT5, cible bien connue de l'activité kinase de BCR-ABL1. Dans une seconde partie, nous avons montré que dans la moelle osseuse des patients LMC, la fraction cellulaire enrichie en cellules souches (les cellules CD34+CD38low) exprime quatre microARN particuliers: mir-10a, mir-150, miR-155 et miR-146a. Deux de ces microARN (miR-150 et miR-155) sont trouvés spécifiquement dans les cellules des patients, et pas dans celles des individus sains. / In chronic myeloid leukemia (CML), the activity of the constitutively active tyrosine kinase BCR-ABL1 drives the activation of the PI3K/AKT, JAK/STAT, and RAS/RAF/MEK/ERK pathways. Among other consequences, activated or inhibited transcription factors induce important modifications of the CML cells gene expression pattern that could impact cell cycle control, apoptosis and genetic instability, leading to the expansion of the oncogene-transformed cells and to the acquisition of potentially harmful de novo mutations. However, indirect BCR-ABL1-dependant regulations might also occur, for instance through the action of microRNAs (miRNAs). Among the ~2000 miRNAs reported in humans, numerous species are up- or down-regulated in various cancer models. In the context of CML however, there is no clear consensus regarding the role of specific miRNAs, despite several studies. The first aim of this thesis was to study the effects of a clinically relevant concentration of imatinib, a tyrosine-kinase inhibitor (TKI) that blocks BCR-ABL1, on the CML cell line K562: both the microRNA expression profile and the cells proteome were analyzed. Using microarray hybridization, RT-qPCR experiments and a functional assay, we identified miR-21 as one of the most significantly down-regulated microRNA in cells that were treated with imatinib. In parallel, a semi-quantitative proteomic approach identified the tumor suppressor programmed cell death protein 4 (PDCD4) as the most over-expressed protein in imatinib-treated cells. We showed that miR-21 can bind to PDCD4 3'UTR and decrease its expression. The STAT5 - miR-21 - PDCD4 pathway was conserved in CML primary CD34+ cells, and to some extent in acute myeloid leukemia (AML) models as well; the known functions of miR-21 and PDCD4 suggest that their regulation by BCR-ABL1 could participate in the antileukemic response triggered by tyrosine kinase inhibitors. In the second part of this manuscript, we was interested in the immature stem cells population that cannot be eliminated by TKI. The underlying mechanisms of this resistance are not fully understood. The TKI-resistant CML stem cells reside in the CD34+/CD38low subpopulation, that can be sorted from the mononuclear cells fraction using FACS. In this project, we propose to describe the microRNA repertoire of the CML CD34+/CD38low cells to highlight the potential role of microRNA in the resistance mechanisms by identifying some of their targets, using bioinformatic and experimental approaches. This combination of miRNome and functional analysis would allow to increase the knowledge of the biology of the TKI-resistant CML stem cells. Our results have shown that the cellular fraction enriched in stem cells (CD34+CD38low) expressed specifically four microRNA: miR-10a, miR-146, miR-150 and miR-155. It is also interested to notice that only two of them, miR-150 and miR-155, are highly expressed in CML-patient CD34+CD38low cells compared to normal cells.

The increasing demand on healthcare from pregnancies complicated by gestational diabetes (GDM) and obesity is caused in large part by fetal macrosomia (FM). Alterations to the vasculature of the placenta leading to changes to nutrient flux may be more frequent when GDM and obesity occur concomitantly. However, the impact of obesity as an independent comorbidity is poorly understood. The current study sought to characterise structural and functional changes in placenta from pregnancies complicated by GDM and/or obesity and examine the involvement of miRs in this phenomenon, as the phenotype of vascular smooth muscle (VSM) has been documented to be influenced by microRNA (miR) expression. Patients were stratified according to the presence or absence of GDM and/or obesity, which resulted in four groups. Morphometric analysis of CD31 immuno-stained placentas showed that pregnancies complicated by GDM or obesity both had a higher mean sum ratio of the area of the lumen compared to the endothelium. No relationship was found with FM. The ratio increased with maternal body mass index (BMI) in all pregnancies. Immunohistochemistry with a panel of VSM markers suggested an altered phenotype of VSM in pregnancies complicated by GDM and/or obesity. RT-QPCR and immunoblotting showed a higher expression of smooth muscle myosin (SM-MHC), h-caldesmon (HC) and alpha smooth muscle actin (ASMA) in pregnancies complicated by obesity, consistent with a greater contractile capacity. This was most marked when obesity occurred without GDM.Studies were conducted on two miRs, miR-145, which is associated with VSM in many vascular tissues, and the snoRNA-derived species miR-664a-3p, which microarray studies had shown to be higher in placentas from pregnancies complicated by GDM. Dicer and dyskerin, components of the snoRNA-derived miR biogenesis pathway, were increased and reduced respectively in GDM placenta. However, studies in cultured placental villous explants suggested that neither miR species was regulated by glucose, insulin or IGF-I. Placental mesenchymal cells are the developmental precursors of VSM. In primary culture, these cells expressed both miRs. To determine the function of miR-664a-3p, a nucleofection protocol was developed in a fetal mesenchymal cell line, WI38, and applied to first-trimester placental mesenchymal cells. Preliminary proteomic analysis after nucleofection-mediated knockdown of miR-664a-3p suggested a series of novel candidate target proteins for this uncharacterised miR species. Blood vessel structure and VSM phenotype are both altered in pregnancies complicated by GDM and/or obesity. The significance of apparently higher level of contractile proteins with wider vessel lumens in obesity requires further investigation. Translational regulation by miRs including miR-145 and miR-664a-3p is implicated in these alterations. In future, targeted therapies that alter miR levels in the placenta may be useful in control of fetal overgrowth such as FM.