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  • About
  • The Global ETD Search service is a free service for researchers to find electronic theses and dissertations. This service is provided by the Networked Digital Library of Theses and Dissertations.
    Our metadata is collected from universities around the world. If you manage a university/consortium/country archive and want to be added, details can be found on the NDLTD website.
231

Design Principles of a Responsive Cell Membrane

Safronova, Nataliya 21 October 2022 (has links)
Cell membranes are essential to life. All living organisms adapt their membranes in response to environmental perturbations to maintain optimal membrane function. However, the principles underlying membrane lipid composition and membrane adaptation remain poorly understood. Deciphering the functional basis for the lipidome complexity employed by cellular life is central to the problem of understanding principles of cell membrane organization, and is currently limited by the staggering complexity of biomembranes, as well as by the limited tools for membrane lipidome manipulation in vivo. My PhD project was designed to bridge this gap through exploring how lipidome size and complexity define cell membrane organization and bioactivity. To achieve the overarching goal, we have created a minimal membrane model system using one of the simplest self-replicating organisms – the mammalian pathogen Mycoplasma. By taking advantage of Mycoplasma’s limited biosynthetic machinery we have established a method of controlling membrane lipid composition in M. mycoides and its synthetic counterpart JCVI Syn3, and have showed that we can finely tune Mycoplasma membrane lipidome through lipid diet. By utilizing our membrane model system in our manuscript, we showed that Mycoplasma membranes are forced to undergo larger magnitudes of lipidomic remodeling in response to temperature when cultivated on lipid diets with a smaller variety of lipid species. We have also demonstrated that larger lipidomes support homeoviscous adaptation in Mycoplasma. Overall, our study showed that varying lipidome size changes the efficiency of membrane lipidome remodeling in response to environmental changes and affects cellular ability to adapt its biophysical properties. At the later stage of my PhD, we have analyzed Mycoplasma transcriptomes to explore protein components responsible for membrane assembly and regulation as a function of membrane lipid composition. The preliminary results identified a non-characterized family of lipoproteins that might be involved in membrane assembly and maintenance in Mycoplasma. Transcriptome experiment opens a roadmap for exploring how lipidome size is linked to cellular metabolism. My PhD work, summarized in this thesis, shows that complex membrane lipidomes are key in supporting membrane biophysical properties and homeostasis. Furthermore, my work sets the stage for the progress in understanding of why living cells evolved to synthesize membrane structures with complex and diverse lipidomes, and what are the minimal requirements for a minimal responsive cell membrane that can support life.
232

An Aminopeptidase Acting as a Potential Factor in Host Adaptation of Mycoplasma Gallinarum

Wan, Xiufeng 03 August 2002 (has links)
Unlike most other host-specific mycoplasmas, Mycoplasma gallinarum exists as a commensal with a host range including most poultry as well as some mammals. This property of M. gallinarum may reflect unique mechanisms for its colonization and persistence in hosts. Whereas M. gallinarum shows leucine and arginine aminopeptidase activity, the genes encoding the enzymes had not been cloned and characterized. We identified an aminopeptidase gene (APN) by oligonucleotide hybridization to a genomic library of M. gallinarum in lambda ZAPII bacteriophage. Nucleotide sequence analysis of overlapping phage clones identified a 1,362 bp open reading frame (ORF) encoding a putative leucine aminopeptidase gene. Database searches indicate that this ORF has 68% nucleotide identity and 51% amino acid identity with the M. salivarium leucine aminopeptidase gene. The active sites of the leucine aminopeptidases in other eukaryotes and prokaryotes were conserved in the cloned aminopeptidase gene. Northern-blot hybridization analysis showed that this ORF is expressed as a 1.5 kb transcript. Southern-blot hybridization analysis demonstrated this gene was present as a single copy in M. gallinarum. Characterization of the leucine aminopeptidase demonstrated that it is a metallo-aminopeptidase (EC 3.4.11.1) and is located in the cytoplasm with a weak interaction with the cell membrane. The subcellular location was further confirmed by immunoblotting with polyclonal anti-recombinant APN serum and M. gallinarum Triton-114 partitions. Immunoblotting results with sera from three chickens experimentally infected with M. gallinarum showed that there were very few proteins in M. gallinarum exposed to the host immune responses and that leucine aminopeptidase was not able to stimulate production of specific humoral antibody. Our results suggest that this leucine aminopeptidase play a role in nutrition supply for the host adaptation of M. gallinarum and that the enzyme was not strongly immunogenic.
233

Evolution et caractérisation fonctionnelle d’une ATPase de type F1-likeX0 spécifique des mycoplasmes / Evolution and functional characterization of a F1-likeX0 ATPase specific of mycoplasmas

Charenton, Claire 21 November 2012 (has links)
Les ATPases F1F0 sont présentes chez la majorité des bactéries, notamment les mycoplasmes qui sont caractérisés par un génome réduit et un mode de vie parasitaire. En plus de l’opéron codant l’ATPase F1F0, des clusters apparentés de sept gènes ont été identifiés dans le génome de nombreux mycoplasmes. Au cours de cette thèse, nous avons cherché à caractériser l’évolution et la fonction de ces clusters supplémentaires. Quatre des protéines codées par ces clusters présentent des similarités structurales avec les sous-unités α, β,  et ε de l’ATPase F1F0, résultant en une potentielle structure F1-like. Les trois autres protéines ne présentent aucune similarité avec des protéines connues. Une localisation transmembranaire est prédite pour deux d’entre elles. Deux types d’ATPase F1-like, Type 2 et Type 3, ont été identifiés. Les clusters de Type 2 et de Type 3 pourraient être originaires du groupe phylogénétique Hominis, les clusters de Type 3 ayant vraisemblablement été disséminés par des transferts horizontaux de gènes entre mycoplasmes colonisant le même hôte. Les gènes du cluster de Type 3 de Mycoplasma mycoides subsp. mycoides sont organisés en opéron et exprimés en milieu axénique. Des études de mutagénèse et de complémentation démontrent que le cluster de Type 3 est associé à une activité ATPase majeure des fractions membranaires. Des analyses biochimiques suggèrent que l’activité ATPase du cluster est sensible au ∆pH mais pas au ∆Ψ. Ces analyses suggèrent que le sodium et le potassium ne sont pas impliqués dans le fonctionnement de l’ATPase F1-likeX0. Les sous-unités des ATPases F1-likeX0 et F1F0 présentent un comportement différent en présence de détergents. L’ensemble de ces expériences suggèrent que l’ATPase F1-likeX0 est un complexe plus fragile que l’ATPase F1F0. Nos résultats montrent qu’en dépit d’une tendance à la réduction de génome, les mycoplasmes ont développé et échangé des ATPases sans équivalent chez d’autres bactéries. Nous proposons un modèle dans lequel une structure F1-like est associée avec un domaine hypothétique X0, enchâssé dans la membrane des mycoplasmes. / F1F0 ATPases have been found in most bacteria, including mycoplasmas that are characterized by drastically reduced genomes and a parasitic lifestyle. In addition to the typical operon of eight genes encoding genuine F1F0 ATPase, related clusters of seven genes were identified in many mycoplasmas. In this work, we investigated the evolution and the function of these supplementary clusters. Four proteins encoded by these clusters present structural similarities with subunits α, β,  and ε of F1F0 ATPases, resulting in potential F1-like structures. The three other encoded proteins did not show any similarity to known proteins. Transmembrane helices were predicted for two of them, suggesting a membrane localisation. Two types of F1-like ATPases, Type 2 and Type 3, were identified. Clusters encoding Type 2 and Type 3 ATPases were assumed to originate from the Hominis group of mycoplasmas. Further spreading of Type 3 ATPases towards other phylogenetic groups by horizontal gene transfers in between mycoplasmas sharing a same host was proposed on the basis of phylogenetic trees and genomic context. Functional analyses indicated that genes of Type 3 cluster in the ruminant pathogen Mycoplasma mycoides subsp. mycoides were organized as an operon. Proteomic analyses indicated that the seven encoded proteins were produced during growth in axenic media. Mutagenesis and complementation assays demonstrated that Type 3 cluster was associated with a major ATPase activity of membrane fractions. Biochemical analyses indicated that this ATPase activity was sensitive to ΔpH but not to ΔΨ. These analyses suggested that Na+ and K+ were not involved in the F1-likeX0 functioning. Our results indicated a behaviour of F1-likeX0 ATPase subunits that is different to that of F1F0 ATPase subunits in presence of detergents. Altogether, these analyses suggest that the F1-likeX0 complex could be more fragile than the F1F0 complex. Our results showed that despite their tendency to genome reduction, mycoplasmas have evolved and exchanged specific F1-like ATPases with no known equivalent in other bacteria. We propose a model in which the F1-like structure is associated with a hypothetical X0 sector embedded in the membrane of mycoplasmal cells.
234

Funktion glykolytischer Enzyme von Mycoplasma pneumoniae in der Wirt-Erreger-Interaktion

Gründel, Anne 24 November 2016 (has links) (PDF)
Mycoplasma pneumoniae ist ein parasitär lebendes Bakterium, das eine atypische Pneumonie beim Menschen verursacht. Aufgrund seiner geringen Genomgröße besitzt dieser Organismus einen eingeschränkten Metabolismus sowie eine limitierte Zahl an Pathogenitätsfaktoren. Dennoch ist dieser Mikroorganismus perfekt an seinen Wirt angepasst und es war zu vermuten, dass neben dem komplexen Adhäsionsapparat von M. pneumoniae auch glykolytische Enzyme eine Rolle bei der Interaktion mit humanen Zellen spielen. Diese Enzyme sind maßgeblich bei intrazellulär ablaufenden Stoffwechselprozessen beteiligt. Es wurde jedoch bereits bei anderen Bakterien gezeigt, dass glykolytische Enzyme ebenfalls auf der Bakterienoberfläche zu finden sind und dort mit Komponenten der extrazellulären Matrix des Wirtes interagieren können. Dieser Vorgang trägt offensichtlich zur erfolgreichen Kolonisation des Wirtes bei. Ziel dieser Arbeit war es, alle glykolytischen Enzyme von M. pneumoniae hinsichtlich ihrer Lokalisierung zu beschreiben und Teilaspekte ihrer Funktion in der Interaktion mit Wirtskomponenten zu analysieren. Die glykolytischen Enzyme wurden rekombinant produziert und für die Herstellung von monospezifischen polyklonalen Antikörpern verwendet. Die Lokalisation der Enzyme wurde durch Nachweis in der Membran- und Zytosolfraktion des M. pneumoniae Gesamtantigens untersucht. Mittels Immunfluoreszenz, Colony Blot und Protease-Verdau intakter Bakterienzellen wurde bestätigt, dass acht (Glycerinaldehyd-3-phosphat-Dehydrogenase, Lactatdehydrogenase, Transketolase, Pyruvatdehydrogenase, Phosphoglyceratmutase und Pyruvatdehydrogenase Untereinheiten A-C) der 19 glykolytischen Enzyme mit der Bakterienoberfläche assoziiert vorkommen. Die Untersuchung von Mutanten ergab, dass die Lokalisation der Enzyme nicht an das Vorkommen der für die Anheftung der Bakterien an Zielstrukturen wesentlichen Adhäsine wie die Proteine P1, P40 und P90 sowie das Oberflächenprotein P01, gekoppelt ist. Jedoch sind sowohl intakte Zellen von M. pneumoniae als auch die oberflächenlokalisierten glykolytischen Enzyme in der Lage, an verschiedene humane Zellen zu binden. Eine Analyse der nachweisbaren Proteine auf der Oberfläche der Zellen führte zur Auswahl von sechs humanen Proteinen für weiterführende Studien: Plasminogen, Vitronektin, Fibronektin, Fibrinogen, Laminin und Laktoferrin. Mittels ELISA wurde eine konzentrationsabhängige Bindung der oberflächenassoziierten Enzyme von M. pneumoniae mit Wirtsproteinen festgestellt, die hinsichtlich der Intensität jedoch Unterschiede aufwies. So konnten ausgeprägte Interaktionen aller Enzyme mit humanem Plasminogen und Vitronektin nachgewiesen werden. Die Bindung von Fibronektin und Laktoferrin ist dagegen nur für einen Teil der glykolytischen Enzyme zu bestätigen. Die Untersuchung verschiedener Einflussfaktoren ergab, dass alle Bindungen zwischen glykolytischen Enzymen und humanen Proteinen spezifisch durch die entsprechenden Antiseren gehemmt werden und dass der Großteil der Interaktionen ionischen Wechselwirkungen unterliegt. Die Bindung zu Plasminogen basiert überwiegend auf Lysin-Resten. Untersuchungen, ob sich die glykolytischen Enzyme gegenseitig in der Bindung zu Wirtsfaktoren beeinflussen, ergab ein komplexes Muster, das hinsichtlich Plasminogen, Fibronektin und Laminin für eine Überlagerung der für die Interaktion maßgeblichen Proteinbereiche spricht. Die Untersuchung einer möglichen Aktivierung von inaktivem Plasminogen zu proteolytisch aktivem Plasmin ergab, dass in Gegenwart aller oberflächenlokalisierten glykolytischen Enzyme von M. pneumoniae Plasmin gebildet wird. Es wurden jedoch Unterschiede im Aktivierungspotenzial nachgewiesen. Die Pyruvatdehydrogenase Untereinheit B zeigte die höchste, die Pyruvatdehydrogenase Untereinheit C die geringste Plasminproduktion. Die Verwendung des gewebespezifischen Plasminogenaktivators führte zu einer höheren Aktivierung als der Urokinase-Typ Plasminogenaktivator. Die Variabilität der Plasminproduktion kann mit der unterschiedlichen Bindungsaffinität der glykolytischen Enzyme zu Plasminogen begründet werden. So besitzt die Pyruvatdehydrogenase Untereinheit B im Vergleich mit der Pyruvatdehydrogenase Untereinheit C ein höheres Bindepotenzial, das sich in der gemessenen Aktivierung widerspiegelt. Die Bildung von Plasmin kann zum Abbau verschiedener extrazellulärer Matrix-Proteine führen. Diese Prozesse sind physiologisch, z. B. in der Fibrinolyse, von Bedeutung. Während in Gegenwart der glykolytischen Enzyme die humanen Proteine Laktoferrin, Laminin und Fibronektin nicht abgebaut wurde, konnte Fibrinogen in Gegenwart der Pyruvatdehydrogenase Untereinheit B bzw. der Phosphoglyceratmutase und Vitronektin durch alle glykolytischen Enzyme (bis auf die Pyruvatdehydrogenase Untereinheit C) degradiert werden. Mit der erstmals durchgeführten Analyse aller glykolytischen Enzyme eines Mikroorganismus hinsichtlich ihrer Lokalisation und der Bindung zu Komponenten der humanen extrazellulären Matrix wurde ein komplexes Netzwerk an Wirt-Erreger-Interaktionen nachgewiesen.
235

Etude de l’implication de l’axe IL-23/Th17 dans deux modèles physiopathologiques humains : la réponse à Mycoplasma hominis et la sclérodermie systémique / Study of the IL-23/Th17 axis involvement in two physiopathological human models : response to Mycoplasma hominis and systemic sclerosis

Truchetet, Marie-Élise 29 November 2012 (has links)
La nature du lien qui unit les deux aspects du système immunitaire, que sont la défense de l’hôte contre les agressions extérieures et la genèse des maladies auto- immunes, n’a pas été élucidée. L’axe IL-23/Th17 joue un rôle dans les deux versants, ce qui le place en bonne position pour être un potentiel chaînon manquant. Objectif : connaître l’implication de cet axe dans un modèle infectieux, Mycoplasma hominis, et un modèle de maladie auto-immune, la sclérodermie systémique (ScS), dans lesquels il n’a pas encore été étudié. Les lipoprotéines membranaires de M. hominis sont capables d’induire une maturation des cellules dendritiques humaines. Elle s’accompagne d’une sécrétion d’IL-23 variable selon l’origine clinique des isolats, via TLR2, et d’une polarisation vers la voie Th17. Nous avons observé une augmentation de la fréquence des cellules Th17 et Th22 dans le sang périphérique des patients ScS, potentialisée par l’iloprost, via entre autres la production monocytaire d’IL-23. Dans la peau des patients ScS, il existe une augmentation des cellules produisant l’IL-17 inversement corrélé au score de fibrose cutanée. In vitro, l’IL-17 est capable d’inhiber partiellement l’expression d’α-SMA induite par le TGF-ß et d’induire la sécrétion de MMP1 par des fibroblastes dermiques humains. L’axe IL-23/IL-17 et les cellules Th17 jouent un rôle dans la défense contre M. hominis et dans la physiopathologie de la ScS. / Relationship between both aspects of the immune system, ie host defense against external aggression and genesis of autoimmune diseases, has not been elucidated. IL-23/Th17 axis plays a role in both sides, which puts him in a good position to be a potential missing link. Objective: To understand the implication of this axis in a model of infection, Mycoplasma hominis, and a model of autoimmune disease, systemic sclerosis (SSc), in which it has not yet been studied.
The membrane lipoproteins of M. hominis are capable of inducing human dendritic cell maturation. It occurs along with an IL-23 secretion changing with the clinical origin of isolates, via TLR2, and a T cell polarization towards Th17. Then we observed an increase in the Th17 and Th22 cell frequency in peripheral blood of SSc patients, further enhanced by iloprost via monocyte production of IL-23 among others. In the skin of SSc patients, we showed an increase in IL-17-producing cells with an inverse correlation to the skin fibrosis score. In vitro, IL-17 is able to partially inhibit the expression of α-SMA induced by TGF-ß and to induce the secretion of MMP1 in human dermal fibroblasts. The IL-23/IL-17 axis and Th17 cells play a role in defense against M. hominis and in the pathogenesis of SSc.
236

Le transfert horizontal de gènes chez les mycoplasmes : de l'acquisition de l'antibiorésistance à la dynamique des génomes. / Horizontal gene transfer in mycoplasmas : from acquisition of antibiotic resistance to genomes dynamics.

Faucher, Marion 08 November 2018 (has links)
Les mycoplasmes sont des bactéries atypiques, dépourvues de paroi et souvent considérées comme des cellules minimales du fait de la taille réduite de leur génome. De nombreuses espèces sont pathogènes et ont un impact économique important dans les filières d'élevage, notamment pour les ruminants. Les mycoplasmes n'échappent pas au phénomène mondial de la résistance aux antibiotiques. Contrairement à la plupart des autres bactéries, les mycoplasmes ne contiennent pas de plasmides conjugatifs souvent incriminés dans la dissémination horizontale de gènes de résistance, la base moléculaire principalement décrite étant la mutation chromosomique des gènes cibles. De façon générale, le transfert horizontal de gènes (HGT) chez les mycoplasmes a longtemps été sous-estimé. Récemment, deux mécanismes de HGT ont été décrits chez Mycoplasma agalactiae : le transfert d'élément conjugatif et intégratif (ICE), et le transfert non-conventionnel de régions chromosomiques par conjugaison appelé MCT (Mycoplasma Chromosomal Transfer). Nos travaux se sont attachés à explorer ce dernier mécanisme et à évaluer son impact sur l'acquisition de la résistance aux antibiotiques. Une analyse de génomique comparative a été conduite à partir du séquençage de nombreux mutants spontanément résistants et de transconjugants générés par des expériences de mating et sélectionnés pour leur résistance. Nos résultats montrent que le MCT conduit de façon distributive au transfert simultané de nombreux fragments. En une seule étape de conjugaison impliquant deux souches, ce phénomène génère une population variée de génomes hautement mosaïques. Il accélère la dissémination de l'antibiorésistance, permettant l'acquisition de plusieurs mutations distantes associées à la résistance en un seul événement. De par les multiples possibilités de réassemblage génomique qu'il produit, le MCT pourrait avoir des conséquences importantes sur d'autres processus adaptatifs comme la virulence ou la spécificité d'hôte. Enfin, les modalités distributives et l’ampleur du MCT expliquent l'origine des transferts de gènes précédemment détectés in silico entre de nombreux mycoplasmes. Ce phénomène pourrait donc avoir eu des répercussions importantes sur l'évolution de ces bactéries minimales et être un facteur clé de leur persistance et virulence actuelles. / Mycoplasmas are wall-less bacteria often portrayed as minimal cells because of their reduced genomes. Several species are pathogenic and have a significant economic impact on livestock production, especially for ruminants. Mycoplasmas are also concerned with the worldwide increase in antibiotic resistance. In contrast to the majority of bacteria, these simple bacteria are deprived of conjugative plasmids that are frequently implicated in the horizontal dissemination of resistance genes: in mycoplasmas antibiotic resistance mainly relies on chromosomal mutations in target genes. In Mycoplasmas, the horizontal gene transfer (HGT) has long been underestimated. Recently, two conjugative mechanisms of HGT were described in Mycoplasma agalactiae: the transfer of an integrative and conjugative element (ICE), and the unconventional transfer of chromosomal DNA further designed by “MCT” for Mycoplasma Chromosomal Transfer. Our current study focused on exploring MCT mechanisms and on estimating its impact on antibiotic resistance dissemination. Comparative genomic analyses were performed from the sequencing (i) of spontaneous resistant mutants and (ii) of transconjugants selected by mating experiments and selected based on their resistance. Data revealed that MCT generated the simultaneous transfer of multiple, unrelated donor-fragments following a distributive process. In one conjugative step involving two strains, MCT generated a variety of highly mosaic genomes. This phenomenon was also shown to accelerate the dissemination of antibiotic resistance, by allowing in one step the acquisition of multiple and dispersed mutations associated with resistance. Due to the limitless ability of this phenomenon in reshuffling genomes, MCT may offer a valuable contribution in other adaptive processes such as virulence or host specificity. Finally, the distributive nature and the extent of MCT explain the origin of genes transfers detected in silico in several mycoplasma species. MCT is certainly a major player in the evolution of these minimal bacteria and a key factor of their persistence and virulence.
237

Organization and integration of large-scale datasets for designing a metabolic model and re-annotating the genome of mycoplasma pneumoniae

Wodke, Judith 19 March 2013 (has links)
Mycoplasma pneumoniae, einer der kleinsten lebenden Organismen, ist ein erfolgversprechender Modellorganismus der Systembiologie um eine komplette lebende Zelle zu verstehen. Wichtig dahingehend ist die Konstruktion mathematischer Modelle, die zelluläre Prozesse beschreiben, indem sie beteiligte Komponenten vernetzen und zugrundeliegende Mechanismen entschlüsseln. Für Mycoplasma pneumoniae wurden genomweite Datensätze für Genomics, Transcriptomics, Proteomics und Metabolomics produziert. Allerdings fehlten ein effizientes Informationsaustauschsystem und mathematische Modelle zur Datenintegration. Zudem waren verschiedene Beobachtungen im metabolischen Verhalten ungeklärt. Diese Dissertation präsentiert einen kombinatorischen Ansatz zur Entwicklung eines metabolischen Modells für Mycoplasma pneumoniae. Zuerst haben wir eine Datenbank, MyMpn, entwickelt, um Zugang zu strukturierten, organisierten Daten zu schaffen. Danach haben wir ein genomweites, Constraint-basiertes metabolisches Modell mit Vorhersagekapazitäten konstruiert und parallel dazu das Metabolome experimentell charakterisiert. Wir haben die Biomasse einer Mycoplasma pneumoniae Zelle definiert, das Netzwerk korrigiert, gezeigt, dass ein Grossteil der produzierten Energie auf zelluläre Homeostase verwendet wird, und das Verhalten unter verschiedenen Wachstumsbedingungen analysiert. Schließlich haben wir manuell das Genom reannotiert. Die Datenbank, obwohl noch nicht öffentlich zugänglich, wird bereits intern für die Analyse experimenteller Daten und die Modellierung genutzt. Die Entdeckung von Kontrollprinzipien des Energiemetabolismus und der Anpassungsfähigkeiten bei Genausfall heben den Einfluss der reduktiven Genomevolution hervor und erleichtert die Entwicklung von Manipulationstechniken und dynamischen Modellen. Überdies haben wir gezeigt, dass die Genomorganisation in Mycoplasma pneumoniae komplexer ist als bisher für möglich gehalten, und 32 neue, noch nicht annotierte Gene entdeckt. / Mycoplasma pneumoniae, one of the smallest known self-replicating organisms, is a promising model organism in systems biology when aiming to assess understanding of an entire living cell. One key step towards this goal is the design of mathematical models that describe cellular processes by connecting the involved components to unravel underlying mechanisms. For Mycoplasma pneumoniae, a wealth of genome-wide datasets on genomics, transcriptomics, proteomics, and metabolism had been produced. However, a proper system facilitating information exchange and mathematical models to integrate the different datasets were lacking. Also, different in vivo observations of metabolic behavior remained unexplained. This thesis presents a combinatorial approach to design a metabolic model for Mycoplasma pneumoniae. First, we developed a database, MyMpn, in order to provide access to structured and organized data. Second, we built a predictive, genome-scale, constraint-based metabolic model and, in parallel, we explored the metabolome in vivo. We defined the biomass composition of a Mycoplasma pneumoniae cell, corrected the wiring diagram, showed that a large proportion of energy is dedicated to cellular homeostasis, and analyzed the metabolic behavior under different growth conditions. Finally, we manually re-annotated the genome of Mycoplasma pneumoniae. The database, despite not yet being released to the public, is internally already used for data analysis, and for mathematical modeling. Unraveling the principles governing energy metabolism and adaptive capabilities upon gene deletion highlight the impact of the reductive genome evolution and facilitates the development of engineering tools and dynamic models for metabolic sub-systems. Furthermore, we revealed that the degree of complexity in which the genome of Mycoplasma pneumoniae is organized far exceeds what has been considered possible so far and we identified 32 new, previously not annotated genes.
238

Avaliação sazonal do perfil sanitário de pombos-domésticos (Columba livia) em áreas de armazenamento de grãos e sementes no Estado de São Paulo / Seasonal health status survey of feral pigeons (Columba livia) in areas used for the storage of grains and seeds in São Paulo State

Ferreira, Vivian Lindmayer 06 August 2012 (has links)
Columbiformes sinantrópicos podem ter um importante papel na epidemiologia de patógenos com potencial zoonótico ou de impacto econômico para a indústria avícola. Dentre eles destacam-se: Mycoplasma spp., Salmonella spp., paramixovírus aviário tipo 1 (APMV-1), inseridos no Programa Nacional de Sanidade Avícola (PNSA) e a Chlamydophila psittaci, agente de uma das principais zoonoses relacionada com aves silvestres. Dentro desse contexto, este trabalho objetivou pesquisar, sazonalmente, a ocorrência destes patógenos em pombos-domésticos (Columba livia) em dois entrepostos no Estado de São Paulo. Ao longo de um ano, mensalmente 10 pombos foram capturados em cada entreposto para a colheita de amostras de suabe cloacal e sangue. A técnica de soroaglutinação rápida em placa (SAR) foi utilizada para a detecção de anticorpos anti-M. synoviae, anti-M. gallisepticum e anti-S.Pullorum/Gallinarum; para a confirmação dos sororeagentes foram utilizadas a prova de inibição da hemaglutinação e soroaglutinação lenta, respectivamente. Para a detecção do DNA de C. psittaci e RNA de AMPV-1 foram utilizados métodos moleculares, PCR e RT-PCR. Para investigação de anticorpos anti-APMV-1 foi empregada a técnica de HI. Na SAR, 3,3% dos soros foram reagentes para M. synoviae; 2,5% para M. gallisepticum e 0,4% para S. Pullorum/Gallinarum. No entanto, essas amostras foram negativas nas técnicas confirmatórias. A ocorrência do APMV-1 não foi detectada. O DNA de C. psittaci foi detectado em 13,3% das amostras sendo 10,8% provenientes de aves capturadas na estação seca e 15,8% na estação chuvosa. Tais resultados são relevantes, pois demonstram que a C. psittaci ocorre em pombos presentes em áreas públicas frequentadas por um grande número de pessoas. Frente à escassez de pesquisas realizadas em Columbiformes no país, novos estudos são necessários para a determinação do real risco que pombos-domésticos podem representar quanto à transmissão de patógenos para aves comerciais e a influência da sazonalidade na disseminação desses microrganismos. / Columbiformes may play an important role in the epidemiology of pathogens with zoonotic potential or economic impact in the poultry industry. Among these pathogens there are Mycoplasma spp., Salmonella spp., Avian Paramyxovirus type 1 (APMV-1), included in the National Poultry Health Program (PNSA) and Chlamydophila psittaci, etiologic agent of an important zoonosis associated with wild birds. Thus, the aim of this study was to investigate, seasonally, the occurrence of the pathogens listed above in feral pigeons (Columba livia) in two warehouses in São Paulo State. During one year, 10 birds were captured monthly in each locality and cloacal swabs and blood samples were collected from each pigeon. The rapid seroagglutination test was performed for the detection of antibodies against M. synoviae, M. gallisepticum and Salmonella Pullorum/Gallinarum. Positive results were submitted to the hemagglutination inhibition and slow seroagglutination test, respectively. For the C. psittacis DNA and APMV-1s RNA diagnosis, molecular techniques PCR and RT-PCR were performed. Hemagglutination inhibition test was also performed in order to detect antibodies against APMV-1. From the serum samples analyzed by rapid seroagglutination test, 3.3% were positive for M. synoviae, 2.5% for M. gallisepticum and 0.4% for S. Pullorum/Gallinarum. However, none of these samples was positive on the confirmatory tests. APMV-1 was not detected in any of the laboratory tests used. C. psittacis DNA was detected in 13.3% of the samples being, 10.8% from pigeons captured during the dry season and 15.8% in the rainy season. These results are relevant since they indicate that C. psittaci occurs in birds living in public areas frequented by a large number of people. The occurrence of the other pathogens was not detected. Nevertheless, due to lack of information about the pigeons sanitary status in the country, additional researches are necessary to determine the risk that feral pigeons can pose in the transmission of pathogens for poultry and the influence of each season in the spread of these microorganisms.
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Identification of essential and virulence genes in Mycoplasma pneumoniae

Blötz, Cedric 31 March 2020 (has links)
No description available.
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Micoplasmas hemotrópicos como potenciais agentes causadores de anemia em felinos domésticos / Hemotrophic mycoplasmas as potential cause of anemia in domestic cats

Hora, Aline Santana da 30 July 2008 (has links)
Com o objetivo de avaliar a magnitude da infecção por micoplasmas hemotrópicos nos felinos anêmicos, amostras sangüíneas de 270 felinos anêmicos (Ht≤29%) e 53 felinos saudáveis foram submetidas à exames hematológicos, bioquímicos séricos (proteína total, albumina, fosfatase alcalina, alanina aminotransferase, aspartato aminotransferase, gamaglutamil transferase, bilirrubinas, uréia e creatinina), avaliação citológica do esfregaço sangüíneo e testes moleculares para a detecção de material genético de Mycoplasma spp. Foram encontradas 25 amostras positivas no grupo dos felinos anêmicos, pela técnica de Nested-PCR utilizando-se primers que amplificam fragmentos do gene 16S rRNA dos hemoplasmas. Dentre as amostras positivas, 23 foram caracterizadas por meio de seqüenciamento como Mycoplasma haemofelis e as duas restantes como \"Candidatus Mycoplasma turicensis\" e Mycoplasma haemocanis, respectivamente. As seqüências de nucleotídeos encontradas nesse estudo estão disponíveis no GenBank, sob os números de acesso EU442616 a EU442640, sendo os números EU442629 e EU442623, referentes ao \"Candidatus M. turicensis\" e M. haemocanis, respectivamente. Nos felinos infectados por M. haemofelis a anemia foi mais intensa quando comparados aos animais anêmicos negativos para qualquer uma das espécies de micoplasmas. Quanto à bioquímica sérica, as concentrações das bilirrubinas e a atividade sérica da ALT foram maiores nos felinos infectados. Adicionalmente, com o intuito de avaliar o papel desempenhado pelos retrovírus no desenvolvimento ou agravamento da anemia causada por micoplasmas hemotrópicos, todos os felinos foram avaliados quanto à infecção pelo vírus da imunodeficiência felina (FIV) e da leucemia felina (FeLV), por meio de testes imunoenzimáticos (ELISA) para a detecção de ambos os vírus, de imunofluorescência indireta para detecção do antígeno do FeLV e de técnicas moleculares de detecção do DNA viral do FIV. Dentre os felinos saudáveis não foi observada nenhuma amostra positiva para os micoplasmas hemotrópicos e/ou retrovírus. A associação entre M. haemofelis e FIV (p=0,009) e entre o M. haemofelis e FeLV (p=0,015) , foi evidenciada. O felino infectado por \"Candidatus M. turicensis\" apresentou discreta diminuição do hematócrito e ausência de sinais de regeneração medular e o felino positivo para M. haemocanis apresentou anemia mais profunda com sinais de regeneração. No primeiro a infecção por nenhum dos retrovírus foi identificada, enquanto que o segundo apresentou co-infecção por FIV e FeLV. As informações obtidas das alterações hematológicas e bioquímicas correlacionadas à infecção pelo M. haemofelis evidenciaram o potencial patogênico dessa espécie de micoplasma hemotrópico. A disfunção imunológica resultante da infecção pelos retrovírus pode predispor à infecção por M. haemofelis, não se excluindo a possibilidade de infecção por outros hemoplasmas. / The present study aimed to evaluate the magnitude of the hemotrophic mycoplasmas infections in anemic cats. Samples from 270 anemic cats (PCV≤29%) and 53 healthy cats were submitted to hematological analysis (CBC, cytologic evaluation of blood smear), serum biochemistry (total protein, albumin, alkaline phosphatase, alanine aminotransferase, aspartate aminotransferase, gama glutamil transferase, bilirubins, urea and creatinin), and molecular assays for hemoplasma DNA detection in blood samples. Among the anemic cats, 25 samples were positive by Nested-PCR for the gender Mycoplasma using primers targeting the 16S rRNA. For species identification, sequencing of the products revealed that 23 cats were infected with Mycoplasma haemofelis, one with \"Candidatus M. turicensis\" and another with M. haemocanis. The GenBank accession numbers of the nucleotide sequences derived in this study are from EU442616 to EU442640 (EU442629 and EU442623 refer to \"Candidatus M. turicensis\" and M. haemocanis, respectively). M. haemofelis-infected cats presented significantly more severe anemia and higher bilirubins concentration and ALT serum activity. Additionally, with purpose to evaluate the role play by the retrovirus in the development or aggravation of the anemia caused by hemotrophic mycoplasmas, all cats were tested for FeLV p27 antigenemia by enzyme-linked immunosorbent assay and by indirect immunofluorescence, and anti-FIV antibodies by enzyme-linked immunosorbent assay and viral DNA by Nested-PCR. None of the healthy cats presented infection with hemotrophic mycoplasmas and/or retroviruses. The association between M. haemofelis and retroviruses (FIV, p=0,009 and FeLV, p=0,015) in anemic cats was evidenced. In the \"Candidatus M. turicensis\"-infected cat, slightly decreased hematocrit with no signs of regeneration were observed; and in the M. haemocanis-infected cat anemia was severe and regenerative. In the first, retroviruses infections were not detected, whereas the second was infected with FIV and FeLV. The hematological and biochemistry abnormalities correlated to the M. haemofelis infection had evidenced the pathogenic potential of this hemoplasma species. In conclusion, immunological dysfunction resulting from retrovirus infection may predispose to M. haemofelis infection, without excluding the possibility of infection with other hemoplasma.

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