1281 |
The Effect of In-Chain Impurities on 1D AntiferromagnetsUtz, Yannic 07 February 2017 (has links) (PDF)
The thesis is devoted to the study of in-chain impurities in spin 1/2 antiferromagnetic Heisenberg chains (S=1/2 aHC's)---a model which accompanies the research on magnetism since the early days of quantum theory and which is one of the few integrable spin systems. With respect to impurities it is special insofar as an impurity perturbs the system strongly due to its topology: there is no way around the defect.
To what extend the one-dimensional picture stays a good basis for the description of real materials even if the chains are disturbed by in-chain impurities is an interesting question which is addressed in this work. For this purpose, Cu Nuclear Magnetic Resonance (NMR) measurements on the cuprate spin chain compounds SrCuO2 and Sr2CuO3 intentionally doped with nickel (Ni), zinc (Zn) and palladium (Pd) are presented. These materials are well known to be among the best realizations of the S=1/2 aHC model and their large exchange coupling constants allow the investigation of the low-energy dynamics within experimentally easily feasible temperatures. NMR provides the unique ability to study the static and dynamic magnetic properties of the spin chains locally which is important since randomly placed impurities break the translational invariance. Because copper is the magnetically active ion in those materials and the copper nuclear spin is most directly coupled to its electron spin, the NMR measurements have been performed on the copper site.
The measurements show in all cases that there are changes in the results of these measurements as compared to the pure compounds which indicate the opening of gaps in the excitation spectra of the spin chains and the emergence of oscillations of the local susceptibility close to the impurities. These experimental observations are compared to theoretical predictions to clarify if and to what extend the already proposed model for these doped systems---the finite spin chain---is suitable to predict the behavior of real materials. Thereby, each impurity shows peculiarities. While Zn and Pd are know to be spin 0 impurities, it is not clear if Ni carries spin 1. To shed some light on this issue is another scope of this work. For Zn impurities, there are indications that they avoid to occupy copper sites, other than in the layered cuprate compounds. Also this matter is considered.
|
1282 |
Experimental observation and quantum chemical investigation of thallium(I) (Z)-methanediazotate: synthesis of a long sought and highly reactive speciesSingh, Neeraj, Fiedler, Benjamin, Friedrich, Joachim, Banert, Klaus 28 April 2017 (has links) (PDF)
For the first time, successful synthesis and characterisation of the missing (Z)-isomer of thallium(I) methanediazotate has been accomplished, utilising low-temperature NMR monitoring analysis. The title compound was synthesised from N-methyl-N-nitrosourea and thallium(I) propoxide, under sub-ambient temperature conditions, as a highly moisture sensitive entity. Quantum chemical calculations, performed at the CCSD(T) level, depict excellent conformity to experimental results. Indeed, compared to its (E) counterpart, the formation of the title compound is thermodynamically less favoured, but preferred by means of kinetic control owing to a hindered isomerisation.
|
1283 |
A site-directed spin labelling study of the human alpha-lactalbumin molten globuleYoung, Matthew Alexander January 2013 (has links)
The human α-lactalbumin (α-LA) molten globule formed at low pH is a model for the study of protein folding intermediates. The molten globule lacks native-like side-chain interactions, resulting in a fluctuating ensemble of tertiary structures, characterisation of which has been precluded by severe line-broadening in NMR spectra and a lack of long-range NOEs. Paramagnetic relaxation enhancements (PREs) have been measured in a variant of α-LA in which all native cysteines have been mutated to alanine (all-Ala α-LA). Cysteine residues have been mutated into regions of interest and spin labelled with MTSL. These measurements have confirmed that all-Ala α-LA forms a compact molten globule. Transient, long-range interactions that are stabilising the compact fold have also been identified using PREs measured in urea-denatured states. This has identified several interactions formed by hydrophobic residues from both the α- and β-domain, which could be important for initiating and driving folding. The molten globule’s 3D topology has been probed by measuring long-range distances between MTSL pairs using Double Electron-Electron Resonance (DEER). Broad distance distributions have been identified between elements of secondary structure, indicative of a fluctuating but compact fold. By contrast, a narrower distance distribution has been measured within one of the major helices, indicative of native-like secondary structure. The surface accessibility of all-Ala α-LA and that of two other variants ([28-111] α-LA and 4SS α-LA) has been probed using solvent PREs obtained using TEMPOL, a paramagnetic co-solute. This has revealed differences in the solvent-exposure of hydrophobic residues due to the removal of disulphide bonds. This method has also identified buried hydrophobic residues that contribute to forming the molten globule’s stable, native-like core.
|
1284 |
Purification par affinité et marquage isotopique spécifique pour études d’ARN fonctionnelsDagenais, Pierre 11 1900 (has links)
Il existe un lien étroit entre la structure tridimensionnelle et la fonction cellulaire de
l’ARN. Il est donc essentiel d’effectuer des études structurales de molécules d’ARN telles
que les riborégulateurs afin de mieux caractériser leurs mécanismes d’action. Une
technique de choix, permettant d’obtenir de l’information structurale sur les molécules
d’ARN est la spectroscopie RMN. Cette technique est toutefois limitée par deux difficultés
majeures. Premièrement, la préparation d’une quantité d’ARN nécessaire à ce type d’étude est un processus long et ardu. Afin de résoudre ce problème, notre laboratoire a développé une technique rapide de purification des ARN par affinité, utilisant une étiquette ARiBo. La deuxième difficulté provient du grand recouvrement des signaux présents sur les spectres RMN de molécules d’ARN. Ce recouvrement est proportionnel à la taille de la molécule étudiée, rendant la détermination de structures d’ARN de plus de 15 kDa extrêmement complexe. La solution émergeante à ce problème est le marquage isotopique spécifique des ARN. Cependant, les protocoles élaborées jusqu’à maintenant sont très coûteux, requièrent plusieurs semaines de manipulation en laboratoire et procurent de faibles rendements.
Ce mémoire présente une nouvelle stratégie de marquage isotopique spécifique
d’ARN fonctionnels basée sur la purification par affinité ARiBo. Cette approche comprend
la séparation et la purification de nucléotides marqués, une ligation enzymatique sur
support solide, ainsi que la purification d’ARN par affinité sans restriction de séquence. La
nouvelle stratégie développée permet un marquage isotopique rapide et efficace d’ARN
fonctionnels et devrait faciliter la détermination de structures d’ARN de grandes tailles par
spectroscopie RMN. / The tridimensional structure of a given RNA molecule is closely linked to its cellular function. For this reason, it is crucial to study the structure of RNA molecules, such
as riboswitches, to characterize their mechanism of action. To do so, NMR spectroscopy is often used to gather structural data on RNA molecules in solution. However, this approach is limited by two main difficulties. First, the production of preparative quantities of natively folded and purified RNA molecules is a long and tedious process. To facilitate this step, our laboratory has developed an RNA-affinity purification method using an ARiBo tag. The second limiting step comes from the extensive signal overlap detected on NMR spectra of large RNA molecules. This overlap is proportional to the length of the RNA, which often prevents high-resolution structure determination of RNAs larger than 15 kDa. To solve this problem, specific isotopic labeling of RNAs can now be achieved. However, existing labeling protocols are expensive, require several weeks of laboratory manipulations and usually provide relatively low yields. This thesis provides an alternative strategy to achieve specific isotopic labeling of
RNA molecules, based on the ARiBo tag affinity purification technique. The protocol
includes the separation and the purification of isotopically labeled nucleotides, an
enzymatic ligation step performed on a solid support and the affinity purification of the
RNA of interest, without any sequence restriction. This new strategy is a fast and efficient
way to label functional RNAs isotopically and should facilitate NMR structure
determination of large RNAs.
|
1285 |
Mass spectrometry of synthetic polysiloxanes : from linear models to plasma-polymer networks / Spectrométrie de masse de polysiloxanes synthétiques : des modèles linéaires à la structure en réseau des plasma-polymèresFouquet, Thierry 14 December 2012 (has links)
Contrairement aux méthodes de polymérisation par voie humide, la « plasma-polymérisation » de précurseurs siliconés (typiquement l'hexaméthyldisiloxane) fournit des couches minces peu solubles, considérées comme riches en chaines courtes et ramifiées, structures cycliques et réticulées, à mi-chemin entre un poly(diméthylsiloxane) (PDMS) et une silice. Ces caractéristiques confèrent des propriétés barrières, électriques ou mécaniques uniques aux substrats traités mais sont autant de difficultés pour leur analyse par spectrométrie de masse. La caractérisation fine d'un plasma polymère serait pourtant d'autant plus utile qu'elle permettrait – indirectement – de proposer ou de valider des mécanismes d'activation et d'oligomérisation du précurseur en phases plasma et solide, connaissance essentielle s'il en est pour la maîtrise des caractéristiques d'un dépôt. Cependant, l'interprétation de données MS/MS en vue de relier un comportement dissociatif à des caractéristiques structurales nécessite l'établissement préalable de règles de fragmentation à partir de modèles pertinents. En l'absence d'étalons plasma-polymère de structure contrôlée, il s'agit donc d'explorer différents modèles potentiels afin d'établir des relations structure/fragmentation pour comprendre les données MS/MS obtenues pour des échantillons réels. Ces études contribueront d'ailleurs à enrichir la littérature sur la fragmentation de polymères siliconés, très réduite en comparaison de polymères à chaine carbonée.A partir des données obtenues depuis les parties solubles de plasma-polymères, les comportements MS/MS d'un ensemble de polymères de référence dument choisis ont été explorés et explicités. / This thesis work aimed at describing the molecular and structural composition of silicon-based plasma-polymers (ppHMDSO) by mass spectrometry. Deposited under a micro-discharge regime at atmospheric pressure, these plasma-polymers exhibit a very low solubility in common solvents, assigned to their highly cross-linked structures, and are hence not easily amenable to ionization. Moreover, structural information cannot be readily deduced from fragmentation data obtained from species extractable from the studied thin films due to the lack of appropriate rules to understand dissociation of the observed gas-phase ions. This research work has thus consisted of developing an analytical strategy to address both of these challenging issues.Owing to the very limited number of articles dealing with tandem mass spectrometry of silicon-containing oligomers, mechanistic investigations were performed on the collision-induced decomposition of selected polymer standards holding different end-groups, expected to be relevant to characterize oligomers suspected to be present in the soluble part of the ppHMDSO samples. Focusing on ammonium adducts, fragmentation routes have first been established for symmetric poly(dimethylsiloxane) (PDMS) polymers holding trimethylsilyl, hydride, or methoxy terminations. POSS molecules were also investigated to understand the influence of cross-linked structures on PDMS adduct dissociation. Some discrepancies between MS/MS spectra of the standards and of the analytes were evidenced, assigned to random branching which could not be modeled by any commercially available compounds.
|
1286 |
Analyse multi-échelle du comportement hygromécanique du bois : Mise en évidence par relaxométrie du proton et mesures de champs volumiques de l'influence de l'hétérogénéité au sein du cerne / Multiscale analysis of the hygromechanical behavior of wood : highlighting the influence of the growth-ring heterogeneity by proton relaxometry and volumetric full-field measurementsBonnet, Marie 20 November 2017 (has links)
La variabilité des propriétés du bois ainsi que son hygroscopicité pourraient être un frein à son utilisation dans la construction, même s’il peut être considéré comme un matériau de choix dans le contexte environnemental et économique actuel. Il est donc primordial de mieux comprendre les origines physiques du comportement du bois pour être capable d’améliorer la prédiction de ses propriétés, et pouvoir ainsi le rendre plus compétitif par rapport aux autres matériaux de construction. Le comportement hygromécanique du bois, caractérisé par des variations dimensionnelles en présence de variations d’hygrométrie, est particulièrement difficile à prédire, du fait de sa microstructure multi-échelle et de ses interactions complexes avec l’eau.Dans ce contexte, la thèse vise à comprendre et enrichir les relations entre la microstructure du bois, ses propriétés de sorption et son comportement hygromécanique, en étudiant l’influence de l’hétérogénéité de l’accroissement annuel (cerne), constitué de bois initial et de bois final dont la structure et les propriétés présentent de nombreuses différences. Cette étude est menée sur du Douglas (Pseudotsuga menziesii (Mirb.) Franco), actuellement référencé comme un matériau de structure intéressant. Des outils de caractérisation avancés sont utilisés : la Résonance Magnétique Nucléaire (RMN) du proton pour caractériser les mécanismes de sorption ; la corrélation d’images volumiques (DVC) pour mesurer les champs de déformations à partir d’images 3D de microtomographie aux rayons X (µTRX), donnant aussi accès à la densité locale du bois.Après une introduction sur le matériau bois et un état de l’art sur son comportement hygromécanique, une caractérisation préliminaire de la microstructure (angle des microfibrilles, largeur de cerne, densité) et du comportement hygromécanique d’échantillons de bois initial et de bois final prélevés dans différents cernes est menée. Une forte anisotropie du bois initial est mise en évidence en opposition au comportement isotrope transverse du bois final. Les déformations suivant la direction des fibres présentent aussi de fortes non-linéarités peu discutées dans la littérature. Une discussion sur la variabilité des propriétés est par ailleurs engagée, ainsi que sur les relations structure-propriétés à l’échelle macroscopique.L’origine des différences de comportement hygromécanique entre le bois initial et le bois final est tout d’abord recherchée au niveau des mécanismes de sorption, au travers une étude de relaxométrie RMN du proton en 2D (cartes T1-T2). Deux types d’eau liée situés dans des environnements distincts sont mis en évidence et leur isotherme de sorption diffère dans les deux types de bois. Une hypothèse sur leur localisation dans la paroi cellulaire est proposée, puis une modélisation simplifiée 2D est effectuée pour évaluer leur impact respectif sur le comportement hygromécanique du bois initial et du bois final, en particulier dans la direction des fibres.Enfin, les champs de déformations locaux et globaux sont étudiés en analysant par DVC des images de µTRX de bois initial et de bois final soumis à différentes sollicitations hydriques. Le couplage entre ces deux matériaux est aussi étudié pour évaluer leurs interactions et comprendre le comportement du bois à l’échelle du cerne. Un protocole de DVC adapté aux images de bois est proposé. Les comportements hygromécaniques du bois initial, du bois final et du cerne sont comparés. A l’échelle locale, des hétérogénéités du champ de déformations sont mises en évidence et corrélées à la densité locale. Leur effet sur le comportement du cerne et sur la courbure des échantillons induite par le chargement hydrique est analysé. Une modélisation 3D par éléments finis, tenant compte des gradients locaux de propriétés, vient enfin compléter cette étude pour améliorer la compréhension des interactions mécaniques entre le bois initial et le bois final / Wood has highly variable properties and is also hygroscopic. These characteristics may restrict its use in construction even if it can be considered as a material of choice with the current environmental and economical concerns. Therefore, it is essential to better understand the physical origins of the behavior of wood in order to improve the prediction of its properties, and making it competitive with respect to other building materials. Dimensional changes of wood appear when it is subjected to relative humidity variations. This hygromechanical behavior is particularly difficult to predict because of the multiscale structure of wood and its complex interactions with water.In this context, the present work aims to understand and enrich relationships between microstructure, sorption properties and hygromechanical behavior of wood. More specifically, it is focused on the influence of the growth-ring heterogeneity, constituted of earlywood and latewood which have different structures and properties. The study is performed on Douglas fir (Pseudotsuga menziesii (Mirb.) Franco), which is a species of significant interest for structural applications. Advanced characterization tools are used: proton Nuclear Magnetic Resonance (NMR) to characterize sorption mechanisms; digital volume correlation (DVC) to measure deformation fields from X-Ray microtomography 3D images (XRµT), also providing local density of wood.At first wood properties and its hygromechanical behavior are described through a literature overview. Preliminary microstructural (microfibril angle, growth-ring width, density) and hygromechanical behavior characterizations of earlywood and latewood samples with different cambium age are performed. Earlywood reveals a strong anisotropic behavior compared to latewood which is isotropic in the transversal plane. Moreover, strains along the fiber direction nonlinearly evolve with moisture content. This phenomenon has been hardly reported and studied in the literature. Discussions on variability of properties and on relationships between structure and properties are also initiated.Sorption mechanisms are then studied by 2D NMR relaxometry (T1-T2 correlation spectra) in order to investigate differences between earlywood and latewood hygromechanical behaviors. Two types of bound water located in distinct environments are highlighted and their sorption isotherms are shown to be different in the two types of wood. A hypothesis on their location in the cell-wall is proposed and a simple 2D model is developed to evaluate their respective effect on the hygromechanical behavior of earlywood and latewood, especially in the fiber direction.Furthermore, local and global strains fields are studied using DVC from XRµT images of earlywood and latewood subjected to relative humidity variations. The coupling of these two materials is also investigated in order to evaluate their mechanical interactions and to understand the behavior at the growth-ring scale. A specific DVC procedure is developed for images of wood. The hygromechanical behaviors of earlywood, latewood and a growth-ring are compared. At the local scale, strains fields heterogeneities are highlighted and correlated to the local density. Their effect on the growth-ring behavior and the samples curvature is analyzed. A 3D finite elements model which takes into account local gradients of properties is finally developed to better understand earlywood-latewood mechanical interactions
|
1287 |
Phytochemical isolation of compounds from the plant sceletium tortuosumSetshedi, Itumeleng Bridgette 11 1900 (has links)
Traditionally, Sceletium tortuosum has been used as a medicine and for social and spiritual purposes. The
genus is distributed in the south-western parts of South Africa. This project phytochemically analysed and
characterised Sceletium plant extracts and determined if any extract showed anti-malarial properties. Extracts
were prepared in ethanol and methanol and various compounds were purified using column chromatography
with hexane and ethyl acetate as mobile phase. The structure of isolated compounds, including mesembrine,
pinitol, sucrose, mesembrenone and obtusalin, was confirmed using NMR. The Plasmodium Lactate
dehydrogenase assay was used to screen all extracts and mesembrine to show that four extracts showed antimalarial
activity with activity values ranging between 1.47 μg/ml and 7.32 μg/ml, well below the 10 μg/ml
cut off value. The study recommends extracting compounds from fresh plant material and further research as
to anti-malarial activity of compounds isolated from Sceletium tortuosum / Life and Consumer Sciences / M. Sc. (Life Sciences)
|
1288 |
Caracterização da estrutura de curto alcance de cimentos de cinza de casca de arroz através da espectroscopia por ressonância magnética nuclear de alta resolução / Characterization of the short range structure of rice husk ash cements studied by high-resolution nuclear magnetic resonanceAbreu, Rômulo Ferreira 13 December 2002 (has links)
A cinza obtida da queima controlada da casca de arroz é um material que apresenta propriedades pozzolânicas: reage na presença de água e dióxido de cálcio produzindo silicato de cálcio hidratado (C-S-H), o material que confere a resistência mecânica aos cimentos. Portanto, a cinza de casca de arroz é um material de potencial interesse para o desenvolvimento de cimentos não convencionais, baseados em subprodutos industriais ou agrícolas. Neste trabalho, os compostos presentes em cinzas de alta reatividade pozzolânica e os produtos obtidos de sua reação pozzolânica foram estudados através da Ressonância Magnética Nuclear (RMN) de alta resolução de 13C e 29Si. Na cinza não hidratada foram detectados domínios de sílica amorfa, o componente principal, e quantidades menores de sílica cristalina (cristobalita e quartzo), carbono amorfo e cadeias de siloxanos. Foi estudada a evolução da reação em pastas obtidas da hidratação da cinza na proporção água: cal: cinza O,47H20+O,53(O,1CCA+O,9Cal)=1 (entre 8 e 134 dias de idade). Mediante a RMN de 29Si foi possível caracterizar a formação de C-S-H e disposição dos grupos silicatos na estrutura. A estrutura do C-S-H obtido é comparável à observada em cimentos convencionais e cimentos de escoria de alto forno, e é compatível com os modelos propostos. A quantidade de C-S-H produzido e a velocidade da reação são menores quando comparadas com os outros cimentos. Efeitos da carbonatação de C-S-H foram observáveis em atmosfera ambiente. Foi detectado também o efeito da hidratação sobre os componentes minoritários da cinza. / The ashes obtained from burning rice husks have pozzolanic properties: in the presence of water and calcium dioxide the ashes react to produce calcium silicate hydrate (C-SH), the main binding agent in cementitiuos materials. Therefore, rice husk ashes are interesting materials in order to produce non-conventional cement, based in industrial or agricultural byproducts. The compounds present in a sample of rice husk ashes of high pozzolanic activity, and the products of hydration, were characterized using high resolution solid-state Nuclear Magnetic Resonance (NMR) of 13C and 29Si. Several compounds were detected in anhydrous ashes: amorphous silica (the main component), and minor quantities of crystalline silica (cristobalite and quartz), amorphous carbon and siloxane polymeric chains. Hardened pastes were prepared with a ratio water:calcium dioxide:ash O,47H20+O,53(O,1dioxide ash+O,9calcio)=1. The evolution of the hydration reaction was monitored at several ages between 8 to 134 days. The formation of C-S-H was detected by 29Si-NMR and the arrangement of the silicate groups was characterized. The structure of the C-S-H formed in these pastes agrees with the one observed in conventional cements and also b1ast furnace slag cements. Also, it is in agreement with the accepted structural models of C-S-H. The amount of C-S-H produced and the velocity of the reaction are minor than those observed in blast furnace slag cements. Carbonation effects were detected in ambient atmospheric conditions. Also, the effect of the hydration on the minority compounds was also detected.
|
1289 |
Análise espectral, geração de estrutura e simulação de dados de RMN 13C / Steroids: spectral analysis, structure generation and simulation of 13C NMR dataFerreira, Marcelo José Pena 24 October 2003 (has links)
O sistema especialista SISTEMAT tem por objetivo auxiliar pesquisadores da área de produtos naturais no processo de determinação estrutural de substâncias. Para tanto, utilizando dados provenientes de várias técnicas espectrométricas e espectroscópicas, principalmente RMN 13C, inúmeros programas foram desenvolvidos com a finalidade de propor o provável esqueleto de uma substância. Essa informação, juntamente com as substruturas apresentadas a partir de um conjunto de dados, é utilizada por geradores estruturais como grandes restrições, a fim de impedir a explosão combinatória e a geração de propostas estruturais incompatíveis com produtos naturais, além de reduzir o elevado tempo computacional gasto durante uma análise. Esse trabalho descreve o desenvolvimento e utilização dos módulos de reconhecimento de esqueletos, determinação e geração estrutural e simulação de dados de RMN 13C de esteróides. Assim, foi elaborada uma base de dados com 1436 substâncias distribuídas entre 119 tipos de esqueletos provenientes das mais diversas fontes naturais. Vários testes foram realizados e bons percentuais de acerto foram obtidos para o reconhecimento de esqueletos e geração de propostas estruturais através da sobreposição dos tipos de anéis encontrados em esqueletos de esteróides. Para validar as propostas estruturais apresentadas pelo gerador, bem como para prever os dados de deslocamentos químicos de novos esteróides, o simulador de dados de RMN 13C foi usado e, quando comparado a um programa comercial de mesma finalidade, apresentou maior exatidão na previsão dos dados. / The aim of the expert system SISTEMAT is to aid natural product researchers in the process of structural determination of organic substances. For that, using data from various spectrometric and spectroscopic techniques, mainly 13C NMR, countless programs were developed to propose the most probable skeleton of a substance. This information together with the substructures shown from the data set are utilized by structural generators as important constraints in order to avoid the combinatorial explosion problem and the generation of incompatible structural proposals for natural products, besides reducing the computational time spent during the analysis. This work describes the development and use of the modules of skeleton identification, structural determination and generation, and the 13C NMR data prediction of steroids. Thus, was built a database containing 1436 steroids distributed in 119 different skeletons originated from the most varied natural sources. Several tests were performed, wherein good hit percentuals were obtained for the skeleton identification and structural generation through the overlapping of the types of rings found in the steroid skeletons. For validation of the structural proposals shown by the generator as well as for prediction of the chemical shift data of new substances, the simulator of 13C NMR data was used and next compared with a commercial program of the same purpose, and exhibited higher accuracy in the data prediction.
|
1290 |
Estudo da dinâmica funcional dos domínios regulatórios do trocador de Na+/Ca2+ de Drosophila melanogaster por ressonância magnética nuclear em solução / Functional dynamics of the regulatory domains from the Drosophila melanogaster\'s Na+/Ca2+ exchanger by nuclear magnetic resonance in solution.Abiko, Layara Akemi 20 March 2015 (has links)
O trocador de Na+/Ca2+ (NCX) constitui um dos principais mecanismos de extrusão de Ca2+ intracelular em células excitáveis. Foi demonstrado que alterações no funcionamento do NCX estão relacionadas a diversas situações patológicas. Por este motivo, o entendimento do mecanismo molecular da manutenção da concentração de Ca2+ intracelular via NCX é importante para a compreensão do funcionamento do trocador, bem como para o desenvolvimento de fármacos. Além de transportar Na+/Ca2+, o NCX também é regulado por esses íons. Este trocador é composto por dois domínios transmembranares, cada um deles contendo 5 α-hélices (TM), e uma grande alça intracelular que conecta as hélices TM5 e TM6. O domínio transmembranar é responsável por catalisar o transporte de Na+/Ca2+ através da bicamada lipídica, enquanto que a alça citoplasmática está envolvida com a regulação do trocador. Esta alça contém dois domínios sensores de Ca2+ adjacentes, denominados CBD1 e CBD2. Apesar da importância fisiológica do NCX, o mecanismo de regulação alostérica do trocador por Ca2+ intracelular permanece desconhecido. Neste trabalho, a espectroscopia de ressonância magnética nuclear (RMN) de alta resolução foi utilizada para investigar a conformação e a dinâmica de CBD1 e CBD2 do trocador de Na+/Ca2+ de Drosophila melanogaster (CALX), isolados ou conectados covalentemente em uma construção denominada CBD12. Um total de 98% das ressonâncias da cadeia principal de CBD1 isolado na presença de Ca2+ foi assinalado, enquanto que na ausência de Ca2+, assinalamentos para apenas uma parte da cadeia principal puderam ser obtidos. Os assinalamentos adquiridos para CBD12 foram baseados na análise de um conjunto de espectros de RMN tridimensional heteronuclear e por comparação com os espectros dos domínios isolados. Uma análise preliminar dos deslocamentos químicos e dos parâmetros de relaxação de 15N obtidos para CBD1 indicou que este domínio é flexível na ausência de Ca2+, mas torna-se rígido após a adição deste íon. As medidas das velocidades de relaxação de 15N e de acoplamentos dipolares residuais (RDCs) de 1H-15N realizadas para CBD12 nas formas apo e holo indicaram que a ligação de Ca2+ em CBD1 estabiliza uma orientação rígida entre os domínios. A análise dos RDCs de 1H-15N mostrou ainda que a orientação média entre CBD1 e CBD2 é praticamente linear na ausência de Ca2+, enquanto que um ângulo menor é assumido após a adição deste íon. Os dados descritos nesta tese suportam um modelo de regulação alostérica em que a modulação da plasticidade de CBD12 pela ligação de Ca2+ no domínio CBD1 controla a abertura e o fechamento do trocador. / The Na+/Ca2+ exchanger (NCX) is a major mechanism for the extrusion of intracellular Ca2+ in excitable cells. It was demonstrated that altered functioning of this protein is related to various pathological situations. Therefore, the understanding of the molecular mechanism for maintaining the intracellular Ca2+ concentration by means of the NCX is important to understand the functioning of the exchanger and to develop drug-based therapies. Besides transporting Na+/Ca2+, the exchanger is also regulated by these ions. The NCX is composed of two transmembrane domains, each of them containing 5 transmembrane alpha-helices (TM), and a very large cytosolic loop that connects TM5 to TM6. The transmembrane domains are responsible for catalyzing the transport of Na+ and Ca2+ ions across the lipid bilayer, while the cytosolic loop is involved in regulation of the exchanger activity. It contains two regulatory Ca2+- binding domains, called CBD1 and CBD2, that appear in tandem. Despite the physiological importance of the NCX, the mechanism of allosteric regulation of the exchanger by intracellular calcium remains unclear. In this work we used high-resolution NMR spectroscopy to study the conformation and the dynamics of the two Ca2+-binding regulatory domains of Drosophila\'s Na+/Ca2+ exchanger (CALX), CBD1 and CBD2, in isolation as well as in a covalent construct called CBD12. Complete backbone NMR resonance assignments were obtained for the isolated CBD1 domain in the Ca2+-bound state, while partial assignments were obtained for CBD1 in the free state. Partial backbone NMR resonance assignments were obtained for the CBD12 construct through the analysis of a standard set of triple resonance NMR spectra. Additional assignments were obtained by comparison with the isolated CBD1 and CBD2 domains. A preliminary analysis of NMR chemical shifts and 15N relaxation data obtained for CBD1 indicates that this domain displays considerable amount of flexibility in the free state, but becomes more rigid upon Ca2+-binding. NMR 15N relaxation rates and 1H-15N residual dipolar couplings (RDCs) obtained for the Apo and Ca2+-bound states of the CBD12 domain indicate that calcium binding stabilizes a rigid inter-domain orientation. Analysis of 1H-15N RDCs further shows that Drosophila\'s CBD12 domain assumes an almost linear inter-domain orientation in the absence of Ca2+, while a smaller inter-domain angle was found in its presence. These findings support a model in which modulation of CBD12 plasticity by the binding of Ca2+ to the CBD1 domain controls the opening and closing of the exchanger.
|
Page generated in 0.0771 seconds