L’objectif de cette thèse était d’accéder au squelette de deux grandes familles d’alcaloïdes, les aspidosperma et les morphinanes, avec pour but, l’utilisation de précurseurs communs, les arylcyclohexa-2,5-diènes. Dans un premier temps, ces arylcyclohexa-2,5-diènes, obtenus par réaction de Birch alkylante, ont été désymétrisés par application de la réaction de Michael. Les substrats ainsi obtenus ont été diversement fonctionnalisés jusqu’à obtention du squelette pentacyclique des aspidosperma. Dans un second temps, plusieurs méthodologies utilisant des réactions de type Mannich ont été développées. Ces méthodologies ont permis d’atteindre une base tricyclique de la famille des morphinanes. Plusieurs transformations ont ensuite été examinées afin d’accéder au squelette tétracyclique avancé de cette famille d’alcaloïdes. / The objective of this work was to access the skeleton of two families of alkaloids, the aspidosperma and the morphinan, using arylcyclohexa-2,5-dienes as common synthetic precursors. In one hand, these arylcyclohexadienes, synthesized by reductive Birch alkylation, were desymmetrized via the Michael reaction. The resulting compounds were then functionalized to give the pentacyclic skeleton of aspidosperma alkaloids. On the other hand, several methodologies were developed using Mannich type reactions. These methodologies allowed an access to the tricyclic framework of the morphinan family. Several transformations were then examined to attain the tetracyclic skeleton of this family of alkaloids.

Foi estudada a degradação do pentaclorofenol (PCP) em reator aneróbio horizontal de leito fixo (RAHLF) de volume de 2000 mL. O reator foi inoculado com microrganismos oriundos de reatores aneróbios não previamente adaptados a PCP. Atividade microbiana foi monitorada através de técnicas clássicas na presença do organoclorado na faixa de 2,0 a 13 mg/L de PCP. O reator apresentou eficiência de 97% na remoção de DQO e completo desaparecimento do composto de PCP em todas as concentrações testadas. A fração orgânica foi consumida totalmente na primeira terça parte do reator de acordo com os valores determinados de ácidos voláteis, DQD e PCP. Não foi verificada inibição da atividade de culturas microbianas. Os exames microscópicos, fluorescência e varredura, permitiram verificar o predomínio de microrganismos pertencentes ao Domínio Archea. As técnicas moleculares PCR, ARDRA e hibridação slot-blot confirmaram o predomínio do Domínio Archaea e possibilitaram a verificação de alterações na diversidade das populações após adição de 2 mg PCP/L. Conclui-se que o reator sem prévia adaptação do inóculo foi eficiente para o tratamento do PCP, e os microrganismos relacionados às Archaea metanogênicas acetocláticas podem estar envolvidas na degradação deste composto. / The degradation of pentachlorophenol (PCP) was studied in a 2000 mL. Horizontal Anaerobic Immobilized System (HAIS). The reactor was inoculated with microorganisms obtained from an anaerobic reactor without previous adaptation to the PCP. The microbial activity was evaluated by using classic techniques in order to . monitor its behavior during the HAIS fed with a range of PCP between 2.0 to 13 mg/L. The reactor presented 97% of efficiency in the removal of COD and complete decrease of PCP in alI concentrations tested. The total consumption of organic fraction took place mainly in the first third part of the reactor according the values of volatile fatty acids, COD and PCP obtained. Microbial inhibition was not verified in during HAIS operation. Microscopic examinations allowed certifying the Archaea Domain predominance according the morphologies observed. The molecular techniques polimerase chain reaction (PCR), ARDRA and slot-blot hibridation confirmed the predominance of Archaea Domain and alIowed verifying some changes in the population\'s diversity under additions of 2mg PCP/L. The efficiency of PCP decreased in the anaerobic reactor was related to the presence of Archaea Domain, especially the acetoclastic methanogens, whose where probably involved with the organochlorine compound degradation.

L’obtention de nouvelles structures zéolithiques a été permise grâce à la diversification des conditions de synthèse, comme l’utilisation d’ions fluorures, la substitution partielle du silicium par du germanium ou l’ajout d’un agent structurant organique. Les travaux développés au cours de cette thèse se concentrent sur la synthèse de nouveaux solides microporeux zéolithiques possédants de larges à extra-larges pores (>10 unités TO4) à l’aide de nouvelles molécules organiques structurantes. Le travail de thèse se divise donc en deux étapes avec, dans un premier temps, la synthèse de molécules organiques originales (dérivées de la pyrrolidine) qui sont ensuite engagées en synthèse hydrothermale. Huit nouveaux structurants non commerciaux ont été élaborés qui ont permis d'obtenir divers matériaux déjà connus, parmi lesquels les zéolithes octadécasil (AST), ITQ-7 (ISV), ITQ-17 (BEC) et ITQ-21. L'utilisation des cations N,N-diméthylperhydro-dicyclopenta[b,d]pyrrolium et N,N-diméthyldicyclopentylammon-ium, ont permis la découverte de deux nouveaux silicogermanates dont l’un de topologie connue nommé clovérite (-CLO) et l’autre nommé Mu-43 présentant une topologie de charpente inédite. Chacun de ces deux matériaux possède un système tridimensionnel de canaux avec des ouvertures à 12 atomes T (Mu-43) ou à 20 atomes T (clovérite). / Several synthetic strategies have emerged such as the use of fluoride, the introduction of germanium and the development of new organic structure directing agents (SDAs) to obtain zeolites, which have led to significant structural diversity. Previous works at the laboratory enable us to develop a new range of non-commercial SDAs that have been designed to produce novel extra-large pores zeolites (>10 TO4 units). Elaborated organic structure directing agents (pyrrolidine derivatives) were first synthesized by a concise route and then engaged in hydrothermal synthesis. Eight non-commercial and original SDAs were produced which led to the synthesis of several known zeolites such as octadecasil (AST), ITQ-7 (ISV), ITQ-17 (BEC) and ITQ-21. The use of the cations N,N-dimethylperhydro-dicyclopenta[b,d]pyrrolium and N,N-dimethyldicyclopentyl-ammonium, allowed us to discover two new silicogermanates named cloverite of known topology -CLO and the novel one Mu 43. Each of these two materials possesses a three-dimensional channel system with 12-membered ring pores (Mu-43) or 20-membered ring pores (cloverite).

Les hydrures de bore et d'aluminium sont très utilisés en chimie organique permettant des réductions hautement chimiosélectives de substrats polyfonctionnels complexes. Les systèmes réducteurs développés jusqu'à nos jours restent incapables d'égaler certaines de ces chimiosélectivités à des coûts compétitifs. L'utilisation des hydrures de bore et d'aluminium pose des problèmes de sécurité, d'environnement et de santé. Leurs réactions génèrent une quantité importante de déchets potentiellement toxiques. Le développement d'alternatives aux hydrures de bore et d'aluminium est donc un enjeu environnemental et économique. Les travaux de cette thèse répondent à cette demande en étudiant l'emploi de dérivés d'hypophosphite et d'hydrure de calcium et de magnésium pour la réduction de fonctions organiques. Ces donneurs d'hydrogènes sont stables à l'air, faciles à manipuler, peu réactifs, peu onéreux et sont composés d'éléments abondants et non toxiques. La réduction de cétones en alcools par l'hypophosphite de sodium a été développée en milieu biphasique en présence de palladium sur charbon ou de complexes de ruthénium homogènes. La réaction avec le palladium sur charbon conduit à un mélange d'alcool et d'alcane. L'optimisation des conditions réactionnelles a permis l'obtention sélective de l'alcool. Une réduction énantiosélective a été développée utilisant RuCl(pcymène)- Ts-DPEN comme catalyseur. Les hydrures de magnésium et de calcium commerciaux ont été activés par broyage mécanique et testés en réduction de l'acétophénone. L'hydrure de calcium a été appliqué à la réaction d'amination et d'alkylation réductrice en présence d'un catalyseur de platine ou de palladium supporté / Boron and aluminum hydrides are widely used in organic chemistry allowing the highly chemoselective reduction of complex multifunctional substrates. Other reducing systems developed until now are unable to equal some of these chemoselectivities with competitive costs. The use of boron and aluminum hydrides raises safety, environmental and health concerns. These reactions produce an important quantity of waste which is potentially toxic. The development of alternatives to boron and aluminum hydrides is thus an environmental and economical issue. This PhD work meets these demands by studying the use of hypophosphite derivatives, calcium and magnesium hydride in the reduction of organic functions. These hydrogen donors are stable to air, easy to handle, poorly reactive, inexpensive and are composed of abundant and non-toxic elements. The reduction of ketones to alcohols by sodium hypophosphite was developed in biphasic media in the presence of palladium on carbon or homogeneous ruthenium complexes. The reaction with palladium on carbon led to a mixture of alcohol and alkane. After optimization of the reaction conditions, alcohols were formed selectively. An enantioselective reduction was developed as well using RuCl(p-cymene)-Ts-DPEN as catalyst. Commercial magnesium and calcium hydride have been activated by ball milling and have been tested in the reduction of acetophenone. Calcium hydride has been applied to the reductive amination and alkylation in the presence of catalytic amount of supported platinum or palladium

Récemment, les exigences en chimie ont évolué rapidement, car le développement durable a retenu plus d'attention. Les principes de la chimie verte ont encouragé les chimistes à développer des produits chimiques et des procédés qui réduisent ou éliminent les substances dangereuses. Les travaux de recherche décrits dans cette thèse portent sur le développement de nouveaux systèmes réducteurs en utilisant des hypophosphites comme substituts aux agents réducteurs toxiques traditionnels.Pour atteindre cet objectif, les nitriles aromatiques ont été réduits en aldéhydes correspondants par la formation du gaz de l’hydrogène et de nanoparticules de nickel en combinant un précurseur de nickel avec de l'hypophosphite de calcium en présence d'une base dans un milieu biphasique. De plus, les nitriles aromatiques ont été réduits en amines primaires en utilisant de l'hypophosphite de calcium et le catalyseur hétérogène palladium sur le carbone. La nature du catalyseur métallique, les additifs, les solvants, la température et les concentrations ont été étudiés en détail.D'autre part, l'amination réductrice directe des cétones aliphatiques et aromatiques a été réalisée pour la première fois en utilisant du palladium hétérogène sur du carbone et de l'hypophosphite d'ammonium qui agit comme une source d'ammoniac et un agent réducteur en même temps. Au cours de l'optimisation, des différents paramètres ont été étudiés / Recently, requirements in chemistry are changing fast, since sustainable development has retained more attention. Green chemistry principles have promoted chemists to develop chemical products and processes that reduce or eliminate hazardous substances. The research work described in this thesis is focused on the development of new reducing systems using hypophosphites as substitutes for traditional toxic reducing agents.In order to achieve this goal, aromatic nitriles were reduced into the corresponding aldehydes by the formation of hydrogen gas and nickel nanoparticles upon combining a nickel precursor with calcium hypophosphite in the presence of base in a biphasic medium. Moreover, aromatic nitriles were reduced into primary amines using calcium hypophosphite and the heterogeneous catalyst palladium on carbon. The nature of the metal catalyst, additives, solvents, temperature, and concentrations were studied in details.On the other hand, the well-known direct reductive amination of aliphatic and aromatic ketones was done for the first time using heterogeneous palladium on carbon, and ammonium hypophosphite which acts as a source of ammonia and as a reducing agent at the same time. During optimization different parameters were studied

Le métabolisme central de la souche E. coli MG1655 Δpgi ΔudhA Δedd Δqor a été rationnellement modifié afin de produire deux moles de NADPH et deux moles de NADH lors de l’oxydation du glucose en acétyl-CoA, alors qu’une souche sauvage produit quatre moles de NADH. La conséquence de cette modification est une forte diminution de son taux de croissance sur milieu minimum et glucose. Afin d’évaluer les aptitudes de cette souche à s’adapter à un tel stress métabolique, son évolution in vivo a été forcée lors de cultures par repiquages successifs sur glucose. Ainsi, après quatre cultures d’évolution un clone pur a été réisolé et caractérisé : un taux de croissance multiplié par six par rapport à la souche non évoluée a été mesuré. L’analyse par CGS (Séquençage par comparaison de génomes) a permis de corréler l’augmentation du taux de croissance à l’apparition d’une mutation, NuoF*(E183A), dans la sous-unité NuoF du complexe respiratoire I, complexe NADH-dépendant. Des études biochimiques et physiologiques de l’impact de cette mutation ont permis de démontrer que le complexe I évolué peut oxyder à la fois le NADPH et le NADH, créant ainsi une nouvelle voie d’oxydation du NADPH dans la cellule. L’évolution in vivo a ensuite été poursuivie au cours de onze repiquages et un nouveau clone pur a été réisolé et caractérisé : un taux de croissance proche de la souche sauvage et onze fois supérieur à celui de la souche non évoluée a alors été mesuré. L’analyse par CGS a permis cette fois de corréler l’augmentation du taux de croissance à l’apparition de deux mutations : NuoF*(E183A) et d’une deuxième dans la sous-unité α de l’ARN polymérase, rpoA*. Enfin, une deuxième souche E. coli MG1655 ΔpfkAB ΔudhA Δedd Δqor a été construite afin de détourner son métabolisme pour produire cette fois trois moles de NADPH et une mole de NADH lors de l’oxydation du glucose en acétyl-CoA. Cette souche étant incapable de se développer en milieu liquide et glucose, une étape de criblage en milieu solide et glucose a permis de sélectionner des clones capables de croître sur glucose. Tous ces clones possédaient soit la mutation NuoF*(E183A), soit une nouvelle mutation NuoF*(E183G), dont la caractérisation biochimique a montré que les deux enzymes évoluées permettent l’oxydation du NADPH par la chaîne respiratoire. Le phénomène d’évolution in vivo a conduit à la création d’une nouvelle fonction pour le NADPH qui n’est plus seulement impliqué dans les réactions de synthèse anabolique mais qui peut être utilisé pour produire directement de l’énergie catabolique. La compréhension globale du phénomène d’évolution a finalement permis la conception de nouvelles souches adaptées pour la production NADPH-dépendante de composés chimiques d’intérêt / Bacterial metabolism is characterized by robustness and plasticity that allow it to adjust too many metabolic perturbations. This present work demonstrates Escherichia coli abilities of evolution and adaptation under stress of NADPH accumulation. We constructed the E. coli MG1655 Δpgi::FRT ΔudhA::FRT Δedd::FRT Δqor::FRT strain where central metabolism has been rationally engineered to produce two mol of NADPH and two mol of NADH during the oxidation of glucose to acetyl-CoA, while a wild-type strain produces 4 mol of NADH per mole of glucose. Consequently, this strain presents a weak growth on glucose mineral medium. So as to evaluate bacterial abilities to overcome such metabolic stress, in vivo evolution of this strain has been forced in laboratory by serial transfer subcultures. After four evolution subcultures, an individual clone has been characterized by a six fold increased growth rate compared to non-evolved strain. CGS (Comparative Genome Sequencing) analysis allowed us to correlate growth improvement with one mutation apparition in respiratory complex: NuoF*(E183A) in NuoF subunit from the NADH dependant complex I. Further biochemical and physiological studies demonstrated that the evolved respiratory complex is able to oxidize both NADH and NADPH, resulting in a new NADPH reoxydation pathway in the cell. In vivo evolution experiments were then continued until eleven subcultures, where a new individual clone has been characterized by an eleven fold increased growth rate compared to non-evolved strain. Additional CGS analysis allowed us to correlate growth improvement with apparition of two mutations: NuoF*(E183A) and another mutation within the RNA polymerase alpha subunit, rpoA*. Thus, a second E. coli MG1655 ΔpfKA::FRT ΔpfKB::FRT ΔudhA::FRT Δedd::FRT Δqor::FRT strain has been rationally engineered to produce three mol of NADPH and one mole of NADH per mole of glucose oxidized to acetyl-coA. As this train was unable to growth in liquid glucose mineral medium, we performed a solid-state screening on glucose mineral medium that led to two different types of NuoF mutations in strains having recovered growth capacity. In addition to the previously seen E183A mutation other clones showed an E183G mutation, both having NADH and NADPH oxidizing ability. This result highlights need of this new NADPH reoxydation pathway for NADPH accumulating cells. This solution creates a new function for NADPH that is no longer restricted to anabolic synthesis reactions but can now be also used to directly produce catabolic energy. Finally, global understanding of evolution process allowed conception of new engineered strains, well designed for NADPH dependant production of chemicals of interest

De nombreux produits naturels renferment dans leurs structures une ou plusieurs sous-unités bicycliques. Parmi celles-ci, les hydrindanes et les décalines occupent une position privilégiée. Afin d’accéder à ces composés, deux approches originales ont été développées. Elles se basent sur un couplage de Morita-Baylis-Hillman, suivi d’une cyclisation réductrice ou d’une réaction de Stetter intramoléculaire. Outre la synthèse rapide et efficace d’hydrindanones et de décalones substituées, ces séquences réactionnelles ont permis la création d’une large variété d’ènediones bicycliques. L’intérêt de ces méthodologies a pu être illustré lors de la synthèse d’une phytotoxine, l’acide coronafacique. / A large variety of natural products contain, embedded in their architectural framework, one or more bicyclic subunits. Among them, hydrindanes and decalins occupy a cardinal position. As novel approaches towards these substructures, we have developed original sequences based upon two key steps: a Morita-Baylis-Hillman condensation, followed by a reductive cyclisation or an intramolecular Stetter reaction. Having delineated suitable conditions, a rapid and connective synthesis of substituted hydrindanones and decalones can thus be accomplished. The strength of our methodologies was also exemplified by the formation of various bicyclic enediones and their application in the synthesis of coronafacic acid, a phytotoxin.

The search for alternatives to the fossil-based products has dramatically surged during past few decades primarily due to the problems associated with the scarcity of these sources and global environmental concerns. Among those many alternatives, exploitation of cellulose, as a raw material to develop novel products has been a constant attempt since it has never lost its both economic and industrial impact. Cellulose is known for its significant contribution as a raw material and as a fascinating sustainable macromolecule, which exhibits wide availability and versatile chemical reactivity to discover novel derivatives for broad range of applications. Conversion of cellulose C2/C3 secondary hydroxyl groups to dialdehyde groups in the presence of periodate is an extremely useful method for regioselective oxidation of cellulose and to activate the polymer for further derivatization. This thesis is primarily focused on synthesis and characterization of wide range of cellulose derivatives exploiting facile periodate oxidation methodology. The first study investigated the use of periodate oxidation as a potential method to synthesize a novel water soluble derivative of cellulose from bleached hardwood Kraft pulp. The work focused on the effect of periodate oxidation and sulfonation reaction on water solubility, morphology and structure of cellulose fibers. The results showed a significant increase in water solubility (2.85 -28.5 g/L) and complete change in surface morphology of the fibers due to the introduction of sulfonic acid groups. In the second study, the same reaction scheme was employed on bead cellulose to prepare anionic 2,3-disulfonated beads. Due to the presence of negatively charged sulfonic acid groups, the beads were found to be agglomerated in presence of cationic starch, exhibiting their future application in chromatographic separation. In the third study, model primary amine compounds such as methyl and butyl amines were grafted to nanowhisker surfaces following periodate oxidation and reductive amination. Then, based on the grafting procedure, in the following study, gamma aminobutyric acid (spacer) and syringyl alcohol (linker) was attached to periodate oxidized nanowhiskers to synthesize a novel drug delivery system. The final study investigated the application of periodate oxidized nanowhiskers as chemical cross-linkers to stabilize gelatin gels. It was concluded that the chemical cross-linking has a significant effect on relative increase in percentage of rigid protons, reduced water uptake ability and reduced pore size of the gels. Not only did the chemical cross-linking improve the storage modulus of the gels (150%) and but it also increased the thermal resistance until 50 oC.

Organohalide-respiring Bacteria (OHRB) play key roles in the reductive dehalogenation of natural organohalides and anthropogenic chlorinated contaminants. Reductive dehalogenases (RDases) catalyze the cleavage of carbon-halogen bonds, enabling respiratory energy conservation and growth. Large numbers of RDase genes, a majority lacking experimental characterization of function, are found on the genomes of OHRB. In silico genomics tools were employed to identify shared sequence features among RDase genes and proteins, predict RDase functionality, and elucidate RDase evolutionary history. These analyses showed that the RDase superfamily could be divided into proteins exported to the membrane and cytoplasmic proteins, indicating that not all RDases function in respiration. Further, Hidden Markov models (HMMs) and multiple sequence alignments (MSAs) based upon biochemically characterized RDases identified previously uncharacterized members of an RDase superfamily, delineated protein domains and amino acid motifs serving to distinguish RDases from unrelated iron-sulfur proteins. Such conserved and discriminatory features among RDases may facilitate monitoring of organohalide-degrading microbial communities or improve accuracy of genome annotation. Phylogenetic analyses of RDase superfamily sequences provided evidence of convergent evolution and horizontal gene transfer (HGT) across distinct OHRB genera. Yet, the low frequency of RDase transfer outside the genus level and the absence of RDase transfer between phyla indicate that RDases evolve primarily by vertical evolution or HGT is restricted among related OHRB strains. Polyphyletic evolutionary lineages within the RDase superfamily comprise distantly-related RDases, some exhibiting activities towards the same substrates, suggesting a longstanding history of OHRB adaptation to natural organohalides. Similar functional and phylogenetic analyses provided evidence that nitrous oxide (N₂O, a potent greenhouse gas) reductase (nosZ) genes from versatile OHRB members of the Anaeromyxobacter and Desulfomonile genera comprised a nosZ sub-family evolutionarily distinct from nosZ found in non-OHRB denitrifiers. Hence, elucidation of RDase and NosZ sequence diversity may enhance the mitigation of anthropogenic organohalides and greenhouse gases (i.e., N₂O), respectively. The tetrachloroethene-respiring bacterium Geobacter lovleyi strain SZ exhibited genomic features distinguishing it from non-organohalide-respiring members of the Geobacter genus, including a conjugative pilus transfer gene cluster, a chromosomal genomic island harboring two RDase genes, and a diminished set of c-type cytochrome genes. The G. lovleyi strain SZ genome also harbored a 77 kbp plasmid carrying 15 out of the 24 genes involved in biosynthesis of corrinoid, likely related to this strains ability to degrade PCE to cis-DCE in the absence of supplied corrinoid (i.e., vitamin B₁₂). Although corrinoids are essential cofactors to RDases, the strictly organohalide-respiring Dehalococcoides mccartyi strains are corrinoid auxotrophs and depend upon uptake of extracellular corrinoids via Archaeal and Bacterial salvage pathways. A key corrinoid salvage gene in D. mccartyi, cbiZ, occurs at duplicated loci adjacent to RDase genes and appears to have been horizontally-acquired from Archaea. These comparative genome analyses highlight RDase dependencies upon corrinoids and also suggest mobile genomic elements (e.g., plasmids) are associated with organohalide respiration and corrinoid acquisition among OHRB. In summary, analyses of OHRB genomes promise to enable more complete modeling of metabolic and evolutionary processes associated with the turnover of organohalides in anoxic environments. These efforts also expand knowledge of biomarkers for monitoring OHRB activity in anoxic environments, and will improve our understanding of the fate of chlorinated contaminants.

We have described herein a convenient one-pot synthesis of lisulfides/diselenides from a-amino acids mediated by ammonium etrathiomolybdate in water. (Figure 1) (Figure) Figure 1 Transformation of α-amino acids into the corresponding tiiocyanates/selenocyanates/disulfides/diselenides Halo-de-amination of a-amino acids using HBr/NaNCte followed by treatment with ammonium tetrathiomolybdate (NH4)2]VloS4 jLb provided a general route for the the one-pot synthesis of chiral a,a' bis (dithio) carboxylic acids (Figure 1, 2b). The yields were moderate, limited mainly the moderate conversion of a-amino acids into the corresponding chiral a-bromides. It was possible to synthesize the 2-thiocyanto carboxylic acids from the corresponding a-amino acids by a similar strategy. Thus diazotization in the presence of KSCN yielded in the chiral 2-thiocyanto carboxylic acids in moderate yields (Figure 1, 3). Thiocyanato-de-amination thus afforded the thiocyanates which when treated with JJD provided the chiral disulfides (Figure 1, 4a). We could thus synthesize both enantiomers of the disulfide from a single enantiomer of the starting a-amino acid. (Figure 1, 4a,4b) Using a similar strategy we have also demonstrated an efficient method for the synthesis of chiral selenocyanates starting from a-amino acids, using selenocyanate anion as the nucleophile (Figure 1, 5). It is possible to demonstrate a one-pot synthesis of chiral diselenides by reductive coupling of selenocyanates using JJb. (Figure 1, 6) (for figure see the pdf file)