With the development of fuel cell based power systems, the need for more advanced DC-DC power converters has become apparent. In such applications DC-DC converters provide an important link between low voltage fuel cell sources and inverter buses operating at significantly higher voltages. Advancements in converter efficiency, cost reduction, and size reduction are the most necessary. These challenges are formidable, even when considering the improvements made to conventional DC-DC topologies. However, it can be possible to achieve these criteria through the implementation of more advanced topologies. A recently developed efficient three-phase DC-DC topology offers benefits over standard designs. Passive component sizes and output ripple voltage were reduced as a result of an effective boost in switching frequency. Converter output voltage was reached more easily due to an increased transformer voltage boost ratio in addition to the turns ratio. For cost reduction, the converter was designed and built with discrete components instead of more expensive integrated modules. This thesis presents an overview of the three-phase converter, with a detailed focus on the design, implementation, and performance of the switching stage. The functionality of the three-phase topology is covered along with the selection of converter components. Simulation results are shown for both ideal and real converter models. Considerations for the switching device package with respect to circuit board and heat sinking configurations are discussed in support of the selection of an insulated metal substrate (IMS) circuit board. An effective circuit layout designed to minimize parasitic trace inductances as well as provide favorable component positioning is presented. Experimental converter test results are shown and the causes of undesired effects are identified. Switching stage modifications and their results are discussed along with the benefits of proposed future design enhancements. / Master of Science

Background: Modifying the gut microbiota through the administration of probiotics during high fat feeding has been shown to attenuate weight gain and body fat accretion while improving insulin sensitivity in animal models. Objective: Our objective was to determine the effects of the probiotic VSL#3 on body weightand composition, skeletal muscle substrate oxidation, and insulin sensitivity and during 4 weeks of high-fat, hypercaloric feeding. We hypothesized that the probiotic would attenuate the body weight and fat gain and adverse changes in insulin sensitivity and substrate oxidation following high fat, hypercaloric feeding in young, non-obese males. Methods: Twenty non-obese males (18-30 y) volunteered to participate in the present study. Following a 2-week eucaloric control diet, subjects underwent a dual x-ray absorptiometry (DXA) to determine body composition, an intravenous glucose tolerance test (IVGTT) to determine insulin sensitivity, a skeletal muscle biopsy for measurement of substrate oxidation. Serum endotoxin was also measured. Subsequently, subjects were randomized to receive either VSL#3 (2 satchets) or placebo during 4 weeks of consuming a high fat (55% fat), hypercaloric diet (+1,000 kcal/day). Macronutrient composition of the high fat diet was 55% fat, 30% carbohydrate, and 15% protein. Results: There were no differences between the groups in subject characteristics or in the dependent variables at baseline. Body weight and fat mass increased less (P<0.045) following the high fat diet with VSL#3 compared to placebo. Insulin sensitivity (and other IVGTT variables) and both glucose and fat oxidation did not change significantly with time or VSL#3 treatment. Serum endotoxin concentration was not different between groups following the high-fat diet. Conclusions: VSL#3, a multi-strain probiotic, attenuated body weight and fat gain following a 4-week high fat, hypercaloric diet compared with a placebo. There were no differences between the VSL and control in circulating endotoxin, insulin sensitivity (and other IVGTT variables) or in skeletal muscle substrate oxidation. / Ph. D.

Insulin resistance (IR), T2DM, and obesity together form a cluster of interrelated metabolic challenges that may be linked by metabolic inflexibility. Metabolic inflexibility is characterized by the resistance to switching substrate oxidation preference based on substrate availability and can be measured in either fasted or insulin-stimulated conditions. As the largest site for glucose disposal and a primary tissue influencing regulation of blood glucose concentrations, skeletal muscle likely plays a central role in regulating substrate oxidation preference based on substrate availability. Skeletal muscle lipotoxicity caused by an impaired regulation of fat uptake and oxidation is postulated to disrupt insulin signaling and lead to skeletal muscle IR. High dietary saturated fat intake results in reduced basal fat oxidation and a resistance to switching to carbohydrate oxidation during insulin-stimulated conditions in susceptible individuals. This metabolic inflexibility may lead to an accumulation of intramyocellular species that impair insulin signaling. Endurance exercise training improves the capacity for fat oxidation in metabolically inflexible individuals. However, relatively little is known about how endurance exercise training influences substrate oxidation preference when paired with a high fat diet (HFD). Therefore, the purpose of this study was to determine the effects of a HFD on substrate metabolism in skeletal muscle of sedentary and endurance trained (ET) males. Healthy, sedentary (n=17) and ET (n=7) males first consumed a 10-day moderate carbohydrate diet (55% carbohydrate, 30% total fat, <10% saturated fat) isocaloric to their individual energy requirements and then underwent a 4- hour high fat challenge testing session. During the session, they consumed a high fat meal (820 kcals; 25% carbohydrate, 63% total fat [26% saturated fat]), and skeletal muscle biopsies were taken in the fasted and 4-hour postprandial conditions. Participants then consumed a 5-day HFD (30% carbohydrate, 55% total fat, 25% saturated fat) and repeated the high fat challenge testing session. Substrate oxidation measures were performed on the collected skeletal muscle tissue, and the meal effect, defined as the percent change from the fasting to 4- hour postprandial condition, for each measure was calculated. There was a HFD by physical activity group interaction on meal effect for metabolic flexibility (P<0.05) and a HFD effect on meal effect for glucose oxidation (P<0.05). Meal effects for metabolic flexibility and glucose oxidation were maintained in the ET (20 ± 4% to 41 ± 21% and 128 ± 92% and 41 ± 15%, respectively; both P>0.05) but decreased in the sedentary (34 ± 7% to 4 ± 5% and 78 ± 26% to -21 ± 6%, respectively; both P<0.01) group. There were trends toward HFD effects on reductions in meal effects for total (P=0.062) and incomplete (P=0.075) fat oxidation, which were driven primarily by an increase in fasting total (12.1 ± 2.6 nmol/mg protein/h to 18.5 ± 2.3 nmol/mg protein/h; P<0.01) and incomplete (11.5 ± 2.5 nmol/mg protein/h to 17.6 ± 2.3 nmol/mg protein/h; P<0.01) fat oxidation in the ET group as a result of the HFD. Fasting total and incomplete fat oxidation did not change in the sedentary group (7.3 ± 0.8 nmol/mg protein/h to 7.8 ± 0.8 nmol/mg protein/h and 6.8 ± 0.7 nmol/mg protein/h to 7.2 ± 0.8 nmol/mg protein/h, respectively; both P>0.05). Overall, these findings suggest the ET state attenuates deleterious effects of a short-term HFD on reduced metabolic flexibility and insulin-stimulated glucose oxidation. In addition, a HFD-induced reduction in fat oxidation during the fasted-to-fed transition may be caused by differing mechanisms in sedentary and ET individuals. These findings provide a basis for future work targeting the elucidation of potential mechanistic differences in substrate oxidation preference between sedentary and ET individuals. / Ph. D. / Type 2 diabetes (T2DM) is a commonly occurring disease worldwide, and treatment of the disease is considerably burdensome for individuals and societies. T2DM is closely related to insulin resistance (IR) and obesity, and in each of these conditions, the characteristic of metabolic inflexibility has been observed. Metabolic inflexibility is a reduced ability to adjust fat or carbohydrate utilization for energy based on the availability of each of these macronutrients. Skeletal muscle may be an important tissue in the regulation of macronutrient utilization since it plays a key role in blood glucose regulation. High dietary saturated fat intake may lead to metabolic inflexibility in skeletal muscle in susceptible individuals. This metabolic inflexibility may result in increased storage of fat within skeletal muscle, which is hypothesized to disrupt insulin signaling. This disruption can lead to IR. Endurance exercise training improves metabolic flexibility. However, little is known about how endurance exercise training influences macronutrient utilization when paired with a high fat diet (HFD). Therefore, the purpose of this study was to determine the effects of a HFD on macronutrient utilization in skeletal muscle of sedentary and endurance trained (ET) males. Seventeen healthy, sedentary males and seven ET males first consumed a 10-day moderate-carbohydrate diet that was provided by the study investigators and designed to keep each participant weight stable. Participants then underwent a high fat challenge testing session in which they consumed a high fat meal and had skeletal muscle biopsies taken both before and after the meal. Participants then consumed a 5-day HFD, also designed to keep them weight stable, and repeated the high fat challenge testing session. Macronutrient utilization measures were performed on the collected skeletal muscle samples. Overall, metabolic flexibility was reduced in the sedentary group but was maintained in the ET group, which suggests that ET individuals may be protected against developing a HFD-induced metabolic inflexibility in skeletal muscle and its associated downstream negative effects on insulin signaling. In addition, fat utilization during the high fat challenge meal decreased in both sedentary and ET individuals as a result of the HFD. However, fat utilization in the fasted state was higher in ET individuals after the HFD compared with baseline, but fat utilization was the same in sedentary individuals before and after the HFD. This suggests there may be differences between sedentary and ET individuals in the mechanisms involved in the adjustment of fat utilization to dietary fat intake. Further research is needed to understand these differences, as they may play important roles in understanding how IR and T2DM develop.

Detection of chemicals is a vital part of chemistry. For this reason, many detection systems are developed by scientists and every detection system has its own advantages. Raman spectroscopy is one of these detection systems having many advantages. However, this technique suffers from low signal intensity disadvantage. By developing a well prepared substrate, this problem can be easily solved / moreover, even single molecule detection can be possible. In this study, a novel surface enhanced Raman scattering (SERS) substrate was prepared in two steps: In the first step, ethylenedioxythiophene (EDOT) monomer was polymerized electrochemically onto indium tin oxide (ITO) coated glass. In the next step, silver ions were reduced electrochemically onto surface prepared in the previous step.In the substrate preparation part, the reduction potential of silver ion, the concentration of silver ions in solution, the polymer film thickness and reduced silver amount on substrates were optimized to get the best SERS performances from substrates. The prepared substrates were characterized by cyclic voltammetry (CV), ultraviolet-visible (UV-Vis) spectroscopy, scanning electron microscopy (SEM), and energy dispersive X-ray spectroscopy (EDX) attached to SEM. In the SERS performance investigation part, homogeneity and the shelf life of the prepared silver-PEDOT substrates were tested. Homogeneity is very important in terms for the applications of Raman technique in quantitative analysis since most of the reported substrates are lack homogeneity consideration, our study will be an important contribution to the literature. The stability of the substrate was investigated for a period of one month. The very small change in the signal at the end of one month indicated that the substrate can be used even longer time with high efficiency. In all the studies, brilliant cresyl blue (BCB) is used as a model compound. Some important Raman active chemicals, namely, rhodamine 6G (R6G) and 4-mercapto benzoic acid (4-MBA) were detected by using the prepared substrates.

Microbial degradation of aromatic hydrocarbons is imperative for maintaining the global carbon cycle and removing potentially toxic aromatic xenobiotics. This thesis focuses on the characterization of a pyruvate-specific class II aldolase (BphI) and acetaldehyde dehydrogenase (BphJ), the final two enzymes of the bph meta-cleavage pathway in Burkholderia xenovorans LB400. This pathway is responsible for the degradation of the industrial pollutant polychlorinated biphenyls (PCB) and therefore mechanistic characterization of these enzymes can be applied to improve pollutant degradation. BphI catalyzes the aldol cleavage of 4-hydroxy-2-oxoacids to pyruvate and an aldehyde while BphJ transforms aldehydes to acyl-CoA, using NAD+ and CoASH as cofactors. Size-exclusion chromatography was used to determine that the oligomeric unit of the BphI-BphJ complex is a heterotetramer. The aldolase BphI was shown to exhibit a compulsory order mechanism and utilize 4-hydroxy-2-oxoacids with an S configuration at C4. The generation of BphI active site variants allowed for the proposal of a catalytic mechanism and a greater understanding as to how stereospecificity occurs. Using steady-state kinetic assays, Arg-16 was demonstrated to be essential for catalysis. Molecular modeling of the substrate and pH dependency (wild-type pKa of ~7, lost in H20A and H20S variants) were used to identify His-20 as the catalytic base. Tyr-290 was originally proposed to be the catalytic acid. However, this was refuted as a Tyr-290 (Y290F) variant did not affect the catalytic efficiency of the enzyme. Instead, the variant was observed to exhibit a loss of stereochemical control. From the crystal structure of an orthologous aldolase-dehydrogenase complex, solvent isotope effect studies, and a proton inventory, a water molecule was implicated as the catalytic acid. Based on their position within the crystal structure, Leu-87 and Leu-89 were implicated in substrate specificity. Replacement of Leu-89 with alanine effectively increased the length of the active site, allowing for the accommodation of longer aldehyde substrates. In contrast, Leu-87 was responsible for hydrophobic stabilization of the C4-methyl of the substrate. Double variants L87N;Y290F and L87W;Y290F were constructed to enable the binding of 4(R)-hydroxy-2-oxoacids. Polarimetric analysis confirmed that the double variants were able to synthesize 4-hydroxy-2-oxoacids of up to 8 carbons in lengths, which were of the opposite stereoisomer to those produced by the wild-type enzyme. Cys-131 was identified as the catalytic thiol that forms an acyl-enzyme intermediate in the dehydrogenase, BphJ. This enzyme was shown to exhibit similar specificity constants for acetaldehyde and propionaldehyde and utilize aliphatic aldehydes from two to five carbons in length as substrates. The enzyme was able to use either NAD+ or NADP+ as the cofactor. Finally, we demonstrated that aldehydes produced in the aldolase reaction are not released into the bulk solvent but are channeled directly to the dehydrogenase, providing the first biochemical determination of substrate channeling in any aldolase-dehydrogenase complex. / Chapter 3 - Reprinted (adapted) with permission from Baker, P., Carere, J., and Seah, S. Y. (2011) Probing the Molecular Basis of Substrate Specificity, Stereospecificity, and Catalysis in the Class II Pyruvate Aldolase, BphI, Biochemistry 50: 3559-3569. Copyright (2011) American Chemical Society. Chapter 4 - Reprinted (adapted) with permission from Baker, P., and Seah, S. Y. (2012) Rational design of stereoselectivity in the class II pyruvate aldolase BphI, J Am Chem Soc 134: 507-513. Copyright (2012) American Chemical Society. Chapter 6 - Reprinted (adapted) with permission from Baker, P., Hillis, C., Carere, J., and Seah, S. Y. (2012) Protein-protein interactions and substrate channeling in orthologous and chimeric aldolase-dehydrogenase complexes, Biochemistry 51: 1942-1952. Copyright (2012) American Chemical Society. / National Science and Engineering Research Council of Canada (NSERC), Ontario Graduate Scholarship in Science and Technology

La RFID, pour Identification par Radio Fréquence, s'est considérablement développée depuis quelques années devenant un mode d'identification et de traçabilité incontournable. Les acteurs du marché sont nombreux et parmi eux, Tageos, société Montpelliéraine, a mis en place dès 2008 un procédé innovant de fabrication de l'étiquette RFID sur papier, économique et écologique. Cependant, même si les performances obtenues lors d'un précédent travail (Thèse C. Ramade 2008-2011) ont été suffisantes pour permettre la production de masse, elles ne sont pas optimales notamment vis-à-vis des résultats établis en laboratoire. C'est dans ce cadre-là que se positionne ce travail de thèse qui s'est réalisé toujours en étroite collaboration entre l'Institut d'Electronique du Sud et la société TAGEOS S.A.S. Nos efforts se sont focalisés : sur l'optimisation du processus de réalisation d'antenne RFID en travaillant sur l'analyse, les méthodes ou protocoles et les moyens techniques sur la préparation du substrat papier, sur des solutions alternatives et complémentaires de réalisation d'antenne RFID et de collage de la puce RFID et sur la fiabilisation et la qualité des produits finis. Par ailleurs, dans ce travail nous avons également démontré la valorisation de notre tag RFID bas coût par l'intégration d'un capteur et de sa fonctionnalité. Le processus de réalisation industriel d'un tel tag est abordé en tenant compte de celui de TAGEOS. / The RFID, for Radio Frequency Identification, has grown considerably in recent years become an essential mode of traceability and identification. Market players are numerous and among them, Tageos (Montpellier, France) established since 2008 an innovative process for manufacturing the RFID tag on paper, economic and ecologic. However, even if the performances obtained during a previous work (Thesis C. Ramade 2008-2011) were sufficient to allow mass production, they are not optimal in particular with respect to the established results in laboratory. It is in this context that ranks this work which is always carried out in close collaboration between the Institute of Electronics of South and TAGEOS company S.A.S. Our efforts were focused : on process optimization of realization of RFID antenna working on the analysis, methods or protocols and technical resources on the preparation of the paper substrate, on alternative and complementary solutions to realize RFID antenna and RFID chip bonding and on the reliability and quality of finished products. Moreover, in this work we have also demonstrated the valorization of our low cost RFID tag by integrating a sensor functionality. The industrial process of producing of this tag taking accounts of TAGEOS process.

Human neutrophil elastase (HNE) is a uniquely destructive serine protease with the ability to unleash a wave of proteolytic activity by destroying the inhibitors of other proteases. Although this phenomenon forms an important part of the innate immune response to invading pathogens, it is responsible for the collateral host tissue damage observed in chronic conditions such as chronic obstructive pulmonary disease (COPD), and in more acute disorders such as the lung injuries associated with COVID-19 infection. Previously, a combinatorially selected activity-based probe revealed an unexpected substrate preference for oxidised methionine, which suggests a link to oxida-tive pathogen clearance by neutrophils. Here we use oxidised model substrates and inhibitors to confirm this observation and to show that neutrophil elastase is specifically selective for the di-oxygenated methionine sulfone rather than the mono-oxygenated methionine sulfoxide. We also posit a critical role for ordered solvent in the mechanism of HNE discrimination between the two oxidised forms methionine residue. Preference for the sulfone form of oxidised methionine is especially significant. While both host and pathogens have the ability to reduce methionine sulfoxide back to methionine, a biological pathway to reduce methionine sulfone is not known. Taken to-gether, these data suggest that the oxidative activity of neutrophils may create rapidly cleaved elas-tase “super substrates” that directly damage tissue, while initiating a cycle of neutrophil oxidation that increases elastase tissue damage and further neutrophil recruitment.

在二十一世紀中， LED發光二極體更是備受期待的節能產品。過去背光源一直是LED主要應用項目，而漸漸地照明也開始採用LED產品，甚至各國已宣布將禁用白熾燈。然而，在各國政府及業者大力推廣及投入LED產業之際，目前LED產品尚未能實現市場替代效應之事實卻不容忽視。細究其可能原因，是否LED產品仍有技術功能缺陷，抑或其價格無法競爭，又者消費者對產品認知不足、終端通路尚未成熟、品牌塑造尚待建立等因素，讓消費者暫時裹足不前? 鑒於台灣在LED產業中已有完整的上中下游布局，不但是下游封裝的全球最大供應中心，近年更也逐步紮根中游晶粒產品，甚至切入上游單晶基板、磊晶產品製程。故此，本研究希冀探查現有LED產品所遭遇之困難，以功能品質及經濟價值等角度，找尋可突破市場瓶頸之關鍵因素，並針對其中可進行專利檢索及分析的較具技術性因素：LED單晶基板，以中國大陸此成長最為顯著之市場作為專利檢索及分析之核心地理區域，探討LED單晶片基板之專利發展趨勢以及研發參考目標及方向。 在進行專利檢索之前，本研究將先行剖析現有LED單晶片基板的應有功能、重點特性、4大類基板材料選擇與其最新研發優勢，包含藍寶石、碳化矽、矽、氮化鎵，以助於後續專利檢索及分析結果之觀察思考。本研究的結論與建議將分別針對不同的LED單晶片基板材料選擇，以專利分析結果對照其市場發展近況，向台灣業者提出藍寶石、碳化矽已係過度競爭、不宜進入的項目，並在最後建議台灣業者仍可持續投入研發LED矽、氮化鎵基板材料，以及額外以技術與應用創新增加其產品的市場連結度及應用產業競爭利基。 / Nowadays LED has become a future mainstream of highly expected energy-saving product. Back-lighting has been the main application for LED, such as in monitors, and furthermore lighting has grown its market size into significance. However, it should draw attention that LED products has not yet fully replace conventional lighting as expected, due to a number of possible factors, including functions, prices, consumer awareness, channeling, and/or branding. In light of the fully established LED industry in Taiwan, including the largest downstream packaging supply source, mature middle-stream wafer production and leading upstream epitaxy and substrate manufacturing, this study aims to seek and find the patent searchable and analyzable part of the current LED obstacles in product quality and economic value perspective. As a result, single crystal substrate falls into abovementioned criteria, including four major substrate materials: sapphire, silicon carbonate, silicon, and gallium nitrite. This study further concentrates the patent search and analysis on China, the fastest growing LED market among all regions and the biggest opportunity for Taiwan players. Before patent search, this study gives a detailed elucidation about four substrate materials on functions, important traits, different types and respective R&D updates and breakthrough, followed by interpretation of and association with patent search and analysis. At the end of this study, conclusions and suggestions are given, based on Taiwan players’ current relative strength and weakness. In sum, sapphire substrates and silicon carbonate substrate have overly competitive patent and market situation, and silicon substrates and gallium nitrite substrate may allow Taiwan players to continue and/or reinforce R&D investment. Additionally, technology and application innovation could increase product-market linkage and competitive edge in LED application industry.

La transglutaminase microbienne (Microbial transglutaminase : MTG) est fortement exploitée dans l’industrie textile et alimentaire afin de modifier l’apparence et la texture de divers produits. Elle catalyse la formation de liaisons iso-peptidiques entre des protéines par l’entremise d’une réaction de transfert d’acyle entre le groupement γ-carboxamide d’une glutamine provenant d’un substrat donneur d’acyle, et le groupement ε-amino d’une lysine provenant d’un substrat accepteur d’acyle. La MTG est tolérante à un large éventail de conditions réactionnelles, ce qui rend propice le développement de cette enzyme en tant que biocatalyseur. Ayant pour but le développement de la MTG en tant qu’alternative plus soutenable à la synthèse d’amides, nous avons étudié la réactivité d’une gamme de substrats donneurs et accepteurs non-naturels. Des composés chimiquement diversifiés, de faible masse moléculaire, ont été testés en tant que substrats accepteurs alternatifs. Il fut démontré que la MTG accepte une large gamme de composés à cet effet. Nous avons démontré, pour la première fois, que des acides aminés non-ramifiés et courts, tels la glycine, peuvent servir de substrat accepteur. Les α-acides aminés estérifiés Thr, Ser, Cys et Trp, mais pas Ile, sont également réactifs. En étendant la recherche à des composés non-naturels, il fut observé qu’un cycle aromatique est bénéfique pour la réactivité, bien que les substituants réduisent l’activité. Fait notable, des amines de faible masse moléculaire, portant les groupements de forte densité électronique azidure ou alcyne, sont très réactives. La MTG catalyse donc efficacement la modification de peptides qui pourront ensuite être modifiés ou marqués par la chimie ‘click’. Ainsi, la MTG accepte une variété de substrats accepteurs naturels et non-naturels, élargissant la portée de modification des peptides contenant la glutamine. Afin de sonder le potentiel biocatalytique de la MTG par rapport aux substrats donneurs, des analogues plus petits du peptide modèle Z-Gln-Gly furent testés; aucun n’a réagi. Nous avons toutefois démontré, pour la première fois, la faible réactivité d’esters en tant que substrats donneurs de la MTG. L’éventuelle amélioration de cette réactivité permettrait de faire de la MTG un biocatalyseur plus général pour la synthèse d’amides. Mots clés: Lien amide, biocatalyse, biotransformation, transglutaminase, arrimage moléculaire, criblage de substrats, ingénierie de substrats. / Microbial transglutaminase (MTG) is used extensively in the food and textile industry to alter the appearance and texture of products. MTG catalyses the formation of isopeptide linkages between proteins by an acyl transfer reaction between the γ-carboxamide group of a glutamine ‘acyl-donor’ substrate, and the ε-amino group of a lysine ‘acyl-acceptor’ substrate. MTG is tolerant to a broad range of reaction conditions and is therefore suitable for further development as a biocatalyst. Toward developing MTG as a “green” alternative for amide synthesis, we have investigated a range of non-native donor and acceptor substrates to probe the scope of MTG reactivity. Small, chemically varied compounds were tested as alternative acyl-acceptor substrates. We observed a broad acceptor specificity. We show, for the first time, that very short-chain alkyl-based amino acids such as glycine can serve as acceptor substrates. The esterified α-amino acids Thr, Ser, Cys and Trp – but not Ile – also show reactivity. Extending the search to non-natural compounds, an aromatic ring was observed to be beneficial for reactivity, although ring substituents reduced reactivity. Overall, bonding of the amine to a less hindered carbon increases reactivity. Importantly, very small amines carrying either the electron-rich azide or the alkyne groups required for click chemistry were highly reactive as acceptor substrates, providing a ready route to minimally modified, ‘clickable’ peptides. These results demonstrate that MTG is tolerant to a variety of chemically varied natural and non-natural acceptor substrates, which broadens the scope for modification of glutamine-containing peptides. To further probe the biocatalytic potential of MTG in terms of the donor substrate, smaller analogues of the model substrate Z-Gln-Gly were tested. We did not find product formation with substrates smaller than the model substrate. We observed, for the first time, trace esterase activity with MTG. Future improvement of this activity would render MTG a more attractive, general biocatalyst for amide bond formation.

La levure Saccharomyces cerevisiae est capable d’utiliser une grande variété de sucres comme source de carbone et d’énergie. La plupart des enzymes impliquées dans l’utilisation de ces sucres sont codées par des gènes issus de familles multigéniques. C’est le cas de la famille IMA identifiée comme impliquée dans l’utilisation de l’isomaltose. Cette famille comprend cinq gènes qui codent pour quatre isomaltases partageant une forte identité de séquence (de 65% à 100 %). Dans ce travail , la diversitéfonctionnelle de la famille IMA a été étudiée, en caractérisant de façon exhaustive in vitro leurs propriétés biochimiques et enzymologiques. Ima1p et Ima2p possèdent des propriétés biochimiques identiques (pH, température, et thermostabilité) mais Ima3p se distingue par rapport à ces deux protéines bien que n’ayant que trois acides de différence avec Ima2p (thermostabilité plus faible). Ima5p quant à elle, est la protéine la plus dissemblable (température optimale plus faible et demi-vie basse dès 37°C). Les quatre isomaltases sont cependant très sensibles au Tris et aux ions Fe3+. Les quatre isoenzymes présentent une préférence pour les disaccharides liés en α-1,6 (isomaltose et palatinose), avec une cinétique de type Michaëlis-Menten et une inhibition par le substrat à une concentration élevée. Les isomaltases Imap sont cependant aussi capables d'hydrolyser les disaccharides α-1,2, α-1,3 et α-1,5 ainsi que les trisaccharides portant une liaison α-1,6, ce qui met en évidence leur ambiguïté de substrat .Nos résultats ont toutefois montré de nombreuses singularités dans cette famille de protéines. Alors que Ima1p et Ima2p présentent des propriétés très semblables, l’activité catalytique de Ima3p est globalement très faible malgré sa forte ressemblance avec Ima2p. Le variant Ima3p_R279Q retrouve des niveaux d'activité proches de ceux d’Ima2p, tandis que la substitution d’une leucine par une proline à la position 240 a permis d’augmenter de manière significative la stabilité d’Ima3p confirmant le rôle des prolines dans la thermostabilité des protéines. L’hydrolyse de l’isomaltose par Ima5p réfute lesconclusions précédemment publiées sur l'exigence d'acides aminés spécifiques pour déterminer la spécificité de α-1,6 puisque le variant IMA5-MQH ne permet pas de restaurer une activité semblable à Ima1p malgré la présence des trois résidus MQH. Nous avons également trouvé qu’Ima5p est inhibé par le maltose suivant une inhibition mixte tandis qu’Ima1p est inhibée de façon compétitive à faible concentration et de manière incompétitive à forte concentration en isomaltose / Most enzymatic systems for sugar uptake and assimilation rely on multigene families in theyeast Saccharomyces cerevisiae. The IMA / MAL family has been used as a model system to study themolecular mechanisms that govern evolution of duplicated genes. The five IMA multigene familymembers encode four isomaltases sharing high sequence identity from 65% to 99%, of which IMA3and IMA4 are 100% identical to encode the same isomaltase. In this work, the functional diversity ofIMA family was further explored, with exhaustive in-vitro characterization of their biochemical andenzymological properties.Ima1p and Ima2p were similar to biochemical properties; Ima3p showed some differences fromthe two proteins; amongst them, Ima5p was the most distant protein. The four isomaltases were highlysensitive to Tris and Fe3+, but were unaffected by the addition or the removal of Ca2+ despiteconservation of the calcium binding site. Besides, four isoenzymes exhibited a preference for the α-(1,6)disaccharides isomaltose and palatinose, with Michaelis-Menten kinetics and inhibition at highsubstrates concentration. They were also able to hydrolyse trisaccharides bearing an α-(1,6) linkage,but also α-(1,2), α-(1,3) and α-(1,5) disaccharides including sucrose, highlighting their substrateambiguity. While Ima1p and Ima2p presented almost identical characteristics, the results neverthelessshowed many singularities within this protein family. In particular, Ima3p presented lower activitiesthan Ima2p despite only 3 different amino acids between these two isoforms. The Ima3p_R279Qvariant recovered activity levels of Ima2p, while the Leu-to-Pro substitution at position 240significantly increased the stability of Ima3p and supported the role of prolines inthermostability.Ima5p presented the lower optimal temperature and was also extremely sensitive to temperature. Isomaltose hydrolysis by Ima5p challenged previous conclusions about the requirement of specificamino acids for determining the specificity for α-(1,6) substrates. We finally found a mixed inhibitionby maltose for Ima5p while, contrary to a previous work, Ima1p inhibition by maltose was competitiveat very low isomaltose concentrations and uncompetitive as the substrate concentration increased.The presented Ph.D’s work provided preliminary insights into determining structural factorswithin this family, exemplifying for example the role of proline residues for thermosability. Moreover,it was illustrated that a gene family encoding proteins with strong sequence similarities can lead toenzyme with notable differences in biochemical and enzymological properties.