Peroxisome proliferator-activated receptor gamma coactivator 1-alpha (PGC-1α) is known as the master regulator of mitochondrial biogenesis. PGC-1α holds this role by acting as a transcriptional coactivator for an array of transcription factors and nuclear hormone receptors, such as NRF-1/2 and ERRα/γ, whose downstream targets function in mitochondrial biogenesis and oxidative phosphorylation. PGC-1α is regulated both at the transcriptional and post-translational level in several signaling pathways, including p38 MAPK and AMPK. This regulation affects which transcription factor binding events can occur in a given tissue, and thus affects regulation of PGC-1α target genes. PGC-1α is downregulated in many neurodegenerative disorders as well as in muscular dystrophies, diabetes, and aging. Therefore, PGC-1α is prized as a potential therapeutic target to create novel treatments for these various diseases.However, details governing the spatio-temporal regulation of PGC-1α are not completely understood, and overexpression of PGC-1α throughout the body or even in certain tissues or subsets of cells have had detrimental effects in animal and cell models. Therefore, it is necessary to gain knowledge of how to modulate PGC-1α in a tissue-specific manner utilizing these different levels of regulation in order to develop novel therapies. In order to further understand all the functions that have been attributed to PGC-1α, the PGC-1α isoforms need to be accounted for and understood in human tissues. Several murine isoforms have been published, as well as several human brain and muscle isoforms. However, most of these isoforms have only been validated as mature transcripts, and it is not known whether they produce functional protein. Our lab has identified the isoform b transcript in human brain tissue via 5’ RACE and have developed an isoform b specific antibody. This project aimed to characterize the isoform b transcripts and also to validate and optimize this antibody for immunoblotting conditions for detection of further PGC-1α-b isoform protein variants in human tissues. Preliminary studies in our lab have shown that in postmortem frontal cortex from age-matched PD and healthy patients, isoform a transcript levels were 10-15 times more abundant than that of isoform b. These differences in regulation could be partially attributed to the isoform b promoter region being heavily methylated, as shown in this thesis through bisulphite cloning and sequencing as well as 454 bisulphite sequence analysis. The high degree of methylation, correlated with the low level of isoform b transcript in brain and it is not known whether this transcript would be translated into protein in this tissue. In order to probe for isoform b protein expression using human cell lines and tissues, however, it was necessary to create a recombinant protein in order to have a positive control with which to optimize our novel antibody. In our previous 5’ RACE studies, an alternatively spliced PGC-1α-b transcript was found which coded for an early stop codon. This truncated isoform was called PGC-1α-b-3T1, and mature transcript was found in both human skeletal muscle and brain. For this project, PGC-1a-b-3T1 was cloned from human skeletal muscle into a bacterial expression vector to create a recombinant GST fusion protein. This protein was used to validate and optimize our PGC-1α-b specific antibody as well as to determine sensitivity and specificity. The purified recombinant protein contained 3 bands of lower molecular weight that were detected via western blot with both GST and the PGC-1α-b specific antibody. These bands were trypsin cleaved and subjected to mass spectrometry analysis, which verified that all bands detected by the PGC-1a-b specific antibody contained the epitope sequence, and thus binding was specific. This protein was then used to determine western blotting conditions and sensitivity, which is 10 ng using a 1:100 dilution of the antibody. This antibody was then used to probe SH-SY5Y WCL, a human neuroblastoma cell line. Peptide competition assay confirmed 5 PGC-1α-b specific proteins in these lysates. The sizes of these proteins matched to several murine PGC-1α-b isoforms as well as putative PGC-1α-b versions of PGC-1a-a isoforms. These findings provided the putative identities of several endogenous functional human PGC-1α-b isoforms. Mammalian overexpression vectors of these isoforms are still in development. By using this antibody and these expression vectors to further characterize these isoforms, including determining tissue specificity, more knowledge of PGC-1α will be gained. This information could then be used to develop novel, tissue specific treatments for pharmacological intervention of diseases characterized by PGC-1α misregulation.

As operárias de Apis mellifera realizam diferentes tarefas de acordo com a sua idade (polietismo etário), sendo que operárias jovens cuidam da cria e quando mais velhas forrageiam. Entretanto, tal transição não segue uma cronologia fixa, mas se ajusta às necessidades da colônia, especialmente as condições nutricionais, tanto da colônia quanto dos indivíduos. Nesse sentido, abordamos a questão de como o metabolismo oxidativo no corpo gorduroso das operárias, i.e., o centro do metabolismo intermediário destes insetos, está relacionado com alterações da função das operárias na colônia e como o mesmo responde a um estresse nutritivo imposto individualmente em duas fases, na fase larval e na fase adulta. Como métodos para avaliar a atividade mitocondrial e o estado redox das células do corpo gorduroso utilizamos um sistema de respirometria de alta resolução para medir o consumo de O2, e realizamos ensaios bioquímicos para quantificar a geração de espécies reativas de oxigênio (EROs), os níveis de óxido nítrico, o número de unidades mitocondriais, e eventuais danos oxidativos resultantes. Ademais, por meio de PCR quantitativa medimos a expressão relativa de genes ligados à biogênese mitocondrial, ao sistema antioxidante e à via de sinalização por hipóxia. Na comparação destes parâmetros entre operárias nutridoras e forrageiras avaliamos separadamente os três principais compartimentos do corpo (cabeça, tórax e abdômen) uma vez que esses estão diferencialmente relacionados a tais funções. Para os tecidos da cabeça observamos que as amostras de nutridoras apresentaram maior consumo de O2, associado a uma maior produção de EROs e expressão elevada dos genes da via de hipóxia, enquanto forrageiras apresentaram maiores quantidades de transcritos dos genes do sistema antioxidantes e menores níveis de danos oxidativos. Para os tecidos do tórax observamos nas forrageiras uma maior capacidade de produção de ATP, acompanhada de uma elevada expressão de genes codificadores de enzimas do sistema antioxidante e menores níveis de danos oxidativos. Com relação aos tecidos abdominais, as abelhas nutridoras apresentaram maior atividade mitocondrial, enquanto as amostras de forrageiras apresentaram maior número de unidades mitocondriais, elevados níveis EROs e também uma expressão elevada dos genes do sistema antioxidante e da via de hipóxia. Assim, os dados revelaram uma clara mudança na atividade mitocondrial e nos padrões redox teciduais associados a esta transição de polietismo etário. Também notamos diferenças nestes parâmetros para cada compartimento do corpo analisado, refletindo uma demanda energética diferencial em cada tecido. A segunda parte do projeto teve como objetivo avaliar os mesmos parâmetros redox em uma situação de restrição alimentar em três situações distintas. O primeiro grupo experimental foi constituído de larvas que sofreram restrição calórica por umperíodo de 10 horas. O segundo grupo foi composto por abelhas recém emergidas que sofreram ou não tal restrição calórica no período larval. O terceiro grupo consistiu de abelhas que sofreram ou não restrição calórica no período larval, e após emergirem foram mantidas em caixas até atingirem a idade de 7 dias, quando foram submetidos novamente a uma restrição calórica. Para o primeiro grupo, as larvas, verificamos que após o período de restrição calórica os genes relacionados com a biogênese mitocondrial e o sistema antioxidante apresentaram níveis de expressão menores comparadas com larvas controle. Observamos também que larvas que sofreram restrição calórica apresentaram menor consumo de O2 e menores níveis de EROs. Para o segundo grupo, as abelhas recém emergidas, não observamos nenhuma diferença na expressão de genes mitocondriais e do sistema antioxidante entre as que sofreram ou não restrição calórica na fase larval, demostrando uma recuperação nestes parâmetros após o período de metamorfose. No terceiro grupo, as abelhas de 7 dias foram submetidas a uma nova restrição calórica para observar se indivíduos que passaram por a situação de estresse no período larval apresentariam uma resposta mais imediata a um estresse nutricional na fase adulta. Os resultados do terceiro grupo revelaram que abelhas que haviam sido expostas a uma situação prévia de restrição calórica, apresentaram uma redução dos transcritos de genes ligados a biogênese mitocondrial e do sistema antioxidante quando comparados ao grupo que sofreu restrição calórica apenas na fase adulta. Em conjunto nossos dados sugerem que a restrição calórica é capaz de diminuir o metabolismo oxidativo e que existe uma resposta aparentemente adaptativa em indivíduos adultos que passaram por essa situação previamente durante o desenvolvimento larval. Assim, esses resultados podem servir para direcionar estudos futuros sobre a relação entre restrição calórica, metabolismo oxidativo e longevidade nesses insetos sociais. / Apis mellifera workers perform different tasks according to their age (age polyethism), where young workers care for the brood and older ones become foragers. However, this a transition does not follow a fixed chronology, but is fitted to the needs of the colony, especially the nutritional conditions of both, the colony and the individual bee. In this sense, we address the question of how oxidative metabolism in the fat body of the workers, e.g., the center of the intermediary metabolism of these insects, is related to changes in the function of the workers in the colony, and how these parameters responds to a nutritional stress imposed individually in two stages, in the larval and adult phase. For evaluating mitochondrial activity and the redox status of fat body cells we used a high resolution respirometry system to measure O2 consumption, and we performed biochemical assays to measure the generation of reactive oxygen species (ROS), levels of nitric oxide, the number of mitochondrial units, and eventual oxidative damages. Furthermore, using quantitative PCR, we measured the relative expression of genes linked to mitochondrial biogenesis, to the antioxidant system, and to the hypoxia signaling pathway. In the comparison of these parameters between nurse and forager workers, we evaluated separately the three main body compartments (head, thorax and abdomen), since these are differentially related to these functions. For the head tissues, we observed that nurses showed higher O2 consumption, associated with higher ROS production and elevated expression of hypoxia pathway genes, while foragers presented higher amounts of transcripts of the antioxidant system genes and lower levels of oxidative damages. For the thorax tissues we found in the foragers a greater capacity of ATP production, accompanied by a higher expression of genes encoding enzymes of the antioxidant system and lower levels of oxidative damage. With respect to the abdominal tissues, nurse bees presented higher mitochondrial activity, while foragers had a higher number of mitochondrial units, elevated ROS levels, and also a higher expression of genes related to the antioxidant system and hypoxia pathway. Thus, these data revealed a clear change in mitochondrial activity and redox tissue patterns associated with this transition of age polyethism. We also noticed differences in these parameters for each of the analyzed body compartment, reflecting a differential energy demand in each tissue. The second part of the project aimed to evaluate the same redox parameters in a food restriction condition in three distinct situations. The first experimental group consisted of larvae that experienced caloric restriction for a 10 hour period. The second group consisted of newly emerged bees that had or not experienced such a caloric restriction in the larval period. The third group consisted of bees that had experienced or not caloric restriction during the larval period, and after emergence were kept in boxes until reaching 7 days old, when they were resubmitted to another caloricrestriction. For the first group, the larvae, we found that after the period of caloric restriction, genes related to mitochondrial biogenesis and the antioxidant system presented lower levels of expression compared to control larvae. We also observed that larvae that had experienced caloric restriction presented lower O2 consumption and lower ROS levels. For the second group, newly emerged bees, we did not observe any differences in the expression of mitochondrial genes and the antioxidant system among those individuals that had experienced or not caloric restriction in the larval phase, indicating a recovery in these parameters after the period of metamorphosis. In the third group, the 7-day-old bees had experienced a new caloric restriction to see whether individuals that had been in a stressful situation during larval period would respond more readily to nutritional stress in adulthood. The results for this group showed that bees that had been exposed to a previous caloric restriction presented a reduction in the transcript levels of genes related to mitochondrial biogenesis and the antioxidant system when compared to the group that experienced caloric restriction only in adulthood. Taken together, our data suggest that caloric restriction is able to diminish the oxidative metabolism, and that there is a seemingly adaptive response in adult individuals that had previously experienced this situation during larval development. Thus, these results can serve to direct future studies on the relationship between caloric restriction, oxidative metabolism and longevity in these social insects.

Les mutations germinales activatrices de la voie RAS sont responsables de maladies rares regroupées sous le nom de RASopathies : le Syndrome de Noonan, le Syndrome de Noonan avec de Multiples Lentigines, la Neurofibromatose de type 1, le Syndrome de Malformations Capillaires et Malformations Artério-Veinseuses, le Syndrome Cardio-Facio-Cutané, le Syndrome de Legius et le Syndrome de Costello. Cette thèse s’intéresse au syndrome de Costello causé par une mutation hétérozygote de novo du gène HRAS. Ce syndrome est révélé dans les premiers mois de la vie et se caractérise par un retard de croissance postnatal, des traits du visage épais, un déficit intellectuel, des anomalies cutanées, ainsi qu’une prédisposition à développer des tumeurs. De plus, les patients atteints du syndrome de Costello développent une cardiomyopathie hypertrophique, de l’hypertension, une hypotonie et une myopathie d'origine moléculaire inconnue. En lien avec une association de malade et le service de génétique du CHU de Bordeaux, nous avons mené une exploration des anomalies protéomiques dans les tissus d’une souris modèle du syndrome de Costello ainsi que dans des fibroblastes de patients et des cellules modèles exprimant les formes mutées de HRASG12S et HRASG12A. Cette analyse globale et sans a priori a révélé des altérations au niveau du métabolisme énergétique et plus particulièrement de la composition des mitochondries. Le déficit fonctionnel des mitochondries, centrale énergétique du corps humain, a été caractérisé par des approches de biochimie, de bioénergétique et de biologie cellulaire. De plus, l’analyse des données ‘omiques’ a permis de suggérer une nouvelle hypothèse dans la physiopathologie du syndrome de Costello. Cette hypothèse considère l’implication d’un micro-ARN, le miR-221* dans l’inhibition du métabolisme oxydatif. Les analyses génétiques réalisées sur les cellules de patients et les cellules modèles ont démontré l’inhibition de l’expression de la protéine AMPK, un régulateur majeur du métabolisme mitochondrial, par le miR-221* sous le contrôle de HRASG12S et HRASG12A. Ces découvertes ont permis d’élaborer une stratégie thérapeutique visant à réduire la cardiomyopathie dans le syndrome de Costello. Les analyses précliniques effectuées sur les modèles cellulaires et le modèle murin ont permis d’évaluer l’efficacité d’une stimulation pharmacologique du métabolisme mitochondrial. Cette thèse révèle donc l’implication des mitochondries dans le syndrome de Costello et l’analyse moléculaire réalisée propose une série de données ‘Omiques’ qui permettront de progresser dans la compréhension de cette maladie rare. / Germline activating mutations of the RAS pathway are responsible for rare diseases grouped under the name of RASopathies: Noonan Syndrome, Noonan Syndrome with multiple Lentigines, Type 1-neurofibromatosis, Capillaries malformations and arteriovenous malformations syndrome, Cardio-Facio-Cutaneous Syndrome, Legius Syndrome and Costello Syndrome. This Ph.D thesis focuses on Costello syndrome that is caused by a heterozygous de novo mutation of the HRAS gene. This syndrome is revealed in the first months of life and is characterized by postnatal growth retardation, thick facial features, intellectual deficit, skin abnormalities, and a predisposition to developing tumors. In addition, patients with Costello syndrome develop hypertrophic cardiomyopathy, hypertension, hypotonia and myopathy of unknown molecular origin. In connection with a patients association and the genetics department of Bordeaux University Hospital, we conducted an exploration of proteomic abnormalities in the tissues of a mouse model of the Costello syndrome as well as in patients’ fibroblasts and cell models expressing mutated forms of HRASG12S and HRASG12A. This global and unbiased analysis revealed alterations in energy metabolism and more particularly in the composition of mitochondria. The functional deficiency of mitochondria, energy plants of the human body, has been characterized by biochemistry, bioenergetics and cell biology approaches. In addition, the 'omic' analysis of Costello syndrome suggested a new pathophysiology hypothesis that considered the involvement of a microRNA, miR-221* in the alteration of oxidative metabolism. Functional genetic analyzes performed on patient cells and cell models demonstrated the inhibition of the expression of the major mitochondrial metabolism regulator AMPK protein by miR-221* under the control of HRASG12S and HRASG12A. These findings led to the development of a preclinical therapeutic strategy to reduce cardiomyopathy in Costello syndrome. Preclinical investigations performed on the cellular models and the murine model made it possible to evaluate the efficacy of a pharmacological stimulation of mitochondrial metabolism. This thesis thus reveals the involvement of mitochondria in Costello syndrome and the molecular analysis carried out makes available a series of 'Omics' data that will allow progress in the understanding of this rare disease.

A restrição calórica (RC) estende a expectativa de vida de muitos organismos por mecanismos ainda em estudo. Entre os vários efeitos fisiológicos da RC encontra-se o aumento na biogênese mitocondrial, dependente de óxido nítrico (NO•), sintetizado pela enzima óxido nítrico sintase endotelial (eNOS). Um dos indutores fisiológicos mais potentes da eNOS é a insulina, cujos níveis plasmáticos são consideravelmente reduzidos nos organismos em RC. O objetivo deste trabalho foi investigar os mecanismos associados ao aumento da sinalização por NO• durante a RC in vivo e in vitro, e as conseqüências celulares do aumento de massa mitocondrial no que diz respeito à longevidade e capacidade respiratória celulares. Submetemos camundongos Swiss fêmeas à RC de 40% e observamos um considerável aumento tecido-específico na fosforilação basal de Akt e eNOS em músculo esquelético, tecido adiposo visceral e cérebro, os quais também apresentaram maior massa mitocondrial. A associação entre a sinalização por insulina, NO• e biogênese mitocondrial foi adicionalmente confirmada em um grupo de camundongos tratados com o desacoplador mitocondrial dinitrofenol (DNP), que também reduz a insulinemia e aumenta a longevidade em camundongos. Para o estudo mecanístico deste fenômeno, usamos soros de ratos Sprague-Dawley submetidos à RC de 40% ou alimentados ad libitum (AL) em cultura celular de células vasculares da musculatura lisa (VSMC), reproduzindo um protocolo descrito para RC in vitro. O uso do soro RC aumentou a fosforilação do receptor de insulina e Akt, a expressão de eNOS e nNOS (forma neural da NOS) e a fosforilação de eNOS, o que se refletiu em maior liberação de nitrito (NO2) no meio de cultura. Inibindo-se a Akt, todos os efeitos promovidos pela RC na sinalização por NO• foram revertidos. Ao se imunoprecipitar do soro a adiponectina, citocina conhecida por aumentar a sensibilidade à insulina, aumentada durante a RC, os efeitos do soro RC na via de sinalização de insulina foram abolidos e, conseqüentemente, os efeitos na sinalização por •NO foram prevenidos. Neurônios de células granulosas de cerebelo, que não expressam eNOS, apenas nNOS, foram cultivados com os soros AL ou RC, e também apresentaram considerável aumento na sinalização por •NO. Estas alterações induziram a biogênese mitocondrial e capacidade respiratória, e foram associadas à maior longevidade celular. Os mesmos efeitos mitocondriais foram observados em células secretoras de insulina, INS1, entretanto a secreção de insulina em resposta à glicose tornou-se inibida, por um mecanismo desconhecido, porém associado a reduzidos níveis intracelulares de espécies oxidantes, moléculas-chave para a secreção de insulina; e à alteração da morfologia mitocondrial, provavelmente devido à maior expressão de mitofusina-2 (Mfn-2). Ao se nocautear a Mfn-2, houve um aumento na geração de EROs e as células em RC passaram a secretar insulina a níveis comparáveis aos das células controle. Concluímos que durante a RC a maior sensibilidade à insulina aumenta a atividade de eNOS, via Akt, associada à maior biogênese mitocondrial. A adiponectina é uma molécula-central nestes eventos. A expressão de nNOS também é afetada, por mecanismos desconhecidos. O aumento de biogênese mitocondrial eleva a capacidade respiratória celular e impacta positivamente a longevidade in vitro. A alteração da morfologia mitocondrial associa-se a alterações na produção de oxidantes intracelulares e mudanças na secreção de insulina. / Calorie restriction (RC) is known to extend the lifespan in many organisms, and its mechanisms of action are still under investigation. Enhanced mitochondrial biogenesis driven by nitric oxide (•NO), synthesized by the endothelial nitric oxide synthase (eNOS), is proposed to be a CR central effect. Insulin is one of the most potent physiological activators of eNOS. However, plasmatic insulin levels are dramatically reduced in organisms under CR. The goal of this work was uncover the mechanisms associated with enhanced •NO signaling during CR, in vivo and in vitro, as well as the cellular consequences of increased mitochondrial mass, regarding lifespan and reserve respiratory capability. Female Swiss mice were submitted to 40% of CR. A tissue-specific (skeletal muscle, abdominal adipose tissue and brain) increment in basal Akt and eNOS phosphorylation, which was related to enhanced mitochondrial biogenesis, was observed. Indeed, this association was also verified in tissues from mice treated with low doses of a mitochondrial uncoupler, dinitrophenol (DNP). To unveil the mechanism behind the insulin signaling effects on •NO levels, serum from Sprague-Dawley rats submmited to 40% of CR was used to culture in VSMC cells, an in vitro CR protocol. CR sera enhanced insulin receptor (IR) and Akt phosphorylation, as well as nitrite (NO2-) accumulation in the culture media, the expression of eNOS and nNOS (neural NOS isoform) and eNOS phosphorylation. The effects of CR sera were reversed by Akt inhibition. The immunoprecipitation of serum adiponectin, a cytokine known to improve peripheral insulin sensitivity, also reversed the CR serum effects on insulin and •NO signaling. Cerebellar neurons, which do not express eNOS, just nNOS, were also cultured with CR or AL serum and also presented striking increments in •NO signaling, associated with mitochondrial biogenesis, increased reserve respiratory capability and lifespan extension. The mitochondrial effects promoted by CR were also observed in insulin secreting cells (INS1). However, under the CR condition, insulin secretion stimulated by glucose was impaired. The likely explanations are reduced mitochondrial reactive oxygen species (ROS) generation, or the alteration in mitochondrial morphology, associated, in our model, with enhanced mitofusin-2 expression (Mfn-2). In cells which the Mfn-2 was knocked down, insulin secretion in CR and AL groups was responsive to glucose at the same level, and the intracellular oxidants levels were much higher. Overall, CR improves •NO signaling due to enhanced insulin sensitivity, through Akt, and results in mitochondrial biogenesis. Adiponectin is a key molecule in this phenomenon. Increments in mitochondrial mass enhance the cellular reserve respiratory capability and lifespan. Mitochondrial morphology alterations are associated with possible decreases in ROS generation and impaired insulin release, maintained the low levels of plasmatic insulin.

La biogenèse des ribosomes matures et fonctionnels est notamment dépendante de petites particules ribonucléoprotéiques composées d’ARN et de protéines, les snoRNP (small nucleolar RiboNucleoProteins). Celles-ci sont subdivisées en deux familles : les snoRNP à boîtes C/D et les snoRNP à boîtes H/ACA. Ces deux classes de snoRNP catalysent des modifications chimiques, respectivement de 2’-O-méthylation et de pseudouridylation, sur des positions spécifiques des ARN ribosomiques (ARNr), ou sont impliquées dans des clivages du long ARNr précurseur. Les snoRNP à boîtes C/D sont composées d’un snoARN à boîtes C/D servant de guide pour cibler la position à modifier, et d’un jeu invariant de quatre protéines : Snu13p/SNU13, Nop1p/Fibrillarine, Nop56p/NOP56 et Nop58p/NOP58 (levure/Homme). Ces snoRNP sont produites par la cellule grâce à la présence de plusieurs complexes protéiques constituant une machinerie pour leur assemblage. Outre plusieurs facteurs protéiques déjà connus dans la biogenèse de snoRNP à boîtes C/D comme les protéines Rsa1p/NUFIP, Hit1p/ZNHIT3 et les protéines du complexe R2TP, d’autres protéines pourraient compléter cette machinerie. Parmi ces facteurs additionnels, la protéine Bcd1p/ZNHIT6, pour Box C/D snoRNA protein 1, est essentielle pour maintenir spécifiquement la stabilité in vivo des snoARN à boîtes C/D, et des associations ont pu être identifiées entre Bcd1p/ZNHIT6 avec différents partenaires protéiques de la machinerie d’assemblage de ces particules. Toutefois, l’étape d’assemblage où Bcd1p/ZNHIT6 intervient et la fonction qu’elle y accomplit demeurent inconnues. L’utilisation d’outils in vivo et in vitro chez la levure S. cerevisiae et chez les mammifères nous ont permis de progresser dans la compréhension de la fonction de Bcd1p/ZNHIT6 dans l’assemblage des snoRNP à boîtes C/D. Bcd1p est un facteur d’assemblage recruté de manière co-transcriptionnelle sur les loci codant les snoARN à boîtes C/D et est requis pour le recrutement des complexes d’assemblage sur les snoARN en cours de transcription. Plus spécifiquement, Bcd1p affecte l’interaction de Nop58p avec le facteur d’assemblage Rsa1p, suggérant une fonction dans le recrutement de Nop58p dans une pré-snoRNP en cours d’assemblage. Ce travail a permis d’apporter des informations importantes permettant d’expliquer le caractère essentiel de Bcd1p dans la fonction et la biogenèse des snoRNP à boîtes C/D / Ribosome biogenesis is especially dependent on the action of small RNA/proteins complexes called small nucleolar ribonucleoproteins (snoRNPs). They are divided into two main families: the so-called box C/D snoRNPs and box H/ACA snoRNPs. Each category performs specific enzymatic processes, 2’-O-methylation and pseudouridylation, respectively, and induces target-specific chemical modification on rRNAs. Few snoRNPs are also essential for pre-rRNA processing. The box C/D snoRNPs are formed by the association of a box C/D snoRNA with a set of four invariant proteins: Snu13p/SNU13, Nop1p/Fibrillarine, Nop56p/NOP56 and Nop58p/NOP58 (yeast/Human). Biogenesis of these RNPs relies on the action of several proteins complexes which constitute a dedicated assembly machinery. Rsa1p/NUFIP, Hit1p/ZNHIT3, and components of the R2TP complex are the best characterized protein actors of this machinery. Additional protein factors probably participate in box C/D snoRNP biogenesis; Bcd1p/ZNHIT6 (Box C/D snoRNA protein 1) is such a candidate as it is essential for the in vivo stability of box C/D snoRNAs, and it was found associated with proteins involved in this machinery in yeast and Human. However, the mechanism governing the recruitment of this protein towards the biogenesis of box C/D snoRNP, and the step of the assembly process relying on the presence of Bcd1p are still unknown. In S. cerevisiae and Human, in vivo and in vitro tools allowed us to improve the understanding of the functions of Bcd1p/ZNHIT6 in box C/D snoRNP assembly. Bcd1p is an assembly factor that is recruited co-transcriptionally on box C/D snoRNA loci, and is required for the recruitment of assembly complexes on nascent snoRNAs. Bcd1p is important for Nop58p association with the assembly factor Rsa1p, which suggests that its primary function is to recruit Nop58p to nascent pre-snoRNPs. This work evidenced important information on the essential role of Bcd1p in C/D snoRNP biogenesis and function

La biogenèse des ribosomes est un processus complexe qui implique la production et l'assemblage de 4 ARN et d'environ 80 protéines. Chez l'Homme, la production des deux sous-unités ribosomiques débute dans le nucléole par la synthèse par l'ARN polymérase I d'un long transcrit contenant les séquences des ARN ribosomiques 5.8S, 18S et 25S, qui s'associe de manière co-transcriptionnelle à des protéines ribosomiques et à des facteurs d'assemblage. Le quatrième ARN ribosomique, l'ARNr 5S est transcrit séparément par l'ARN polymérase III, et s'associe avec les protéines ribosomiques Rpl5 et Rpl11 en dehors du ribosome. Ce sous-complexe, appelé particule 5S, est ensuite intégré au sein de la grande sous-unité. La particule 5S est également impliquée dans le contrôle de la prolifération cellulaire. En effet, en cas de dé-régulation de la biogenèse du ribosome, la particule 5S s'accumule dans le nucléoplasme et interagit directement avec l'ubiquitine-ligase MDM2, provoquant la stabilisation du suppresseur de tumeur p53. L'objectif principal de ma thèse est d'étudier le rôle des facteurs d'assemblage Rpf2 et Rrs1 dans la biogenèse du ribosome. Ces protéines assurent deux fonctions distinctes : elles sont requises pour l'association de la particule 5S avec la sous-unité pré-60S, et stimulent la transcription des ARNr par l'ARN polymérase I. Elles sont donc impliquées dans deux événements fondamentaux qui conditionnent les capacités de prolifération cellulaire. La combinaison d'études structurales par cristallographie aux rayons X, et d'études d'interactions protéine-ARN in vitro et in vivo, m'ont permis de mieux appréhender le rôle du complexe Rpf2/Rrs1 dans l'intégration de la particule 5S et dans la maturation de la grande sous-unité. J'ai également étudié le rôle du complexe Rpf2/Rrs1 dans la régulation de la transcription des ARNr, en caractérisant ses interactions avec la polymérase I. / Ribosome Biogenesis is a complex process that requires the production and the correct assembly of the 4 rRNA with more than 80 proteins. Ribosome biogenesis starts by the transcription of a pre-RNA precursor in the nucleolus. Three of the four ribosomal RNAs, the 5.8S, 18S, and 25S rRNAs, are cotranscribed as a single 35S precursor by polymerase I. This precursor is cotranscriptionally modified, folded, cleaved, and assembled with both ribosomal proteins and non-ribosomal factors to generate the mature ribosomes. The fourth rRNA, the 5S rRNA, is transcribed by RNA polymerase III and is assembled into the 5S particle, containing ribosomal proteins Rpl5 and Rpl11, prior to its incorporation into preribosomes. In mammals, the 5S RNP is also a central regulator of the homeostasis of the tumor suppressor p53 The main objective of my thesis was to understand the precise roles of the two assembly factors Rpf2 and Rrs1 in ribosome biogenesis. These proteins have two distinctive functions : Rpf2 and Rrs1 are required for the 5S particle incorporation into the large subunit, and stimulate the rRNA transciption by polymerase I. Using a combination of structural studies by X-Ray crystallography and biochemical approaches as in vitro and in vivo methods to study proteins-RNA interactions, I was able to uncover the function of the Rpf2/Rrs1 dimer in the maturation of the large subunit through the recruitment of the 5S particle. I also studied the function of Rpf2 and Rrs1 in the rRNA transcription regulation, by characterizing physical connection with polymerase I subunits.

SoxR est un régulateur transcriptionnel à centre [2Fe-2S] qui induit une réponse adaptative permettant à E. coli de résister aux composés redox actifs, générateurs de stress superoxyde. En présence de composés redox actifs, le centre [2Fe-2S] de SoxR est oxydé ce qui lui permet d’activer l’expression du gène soxS codant pour un régulateur transcriptionnel activant l’expression d’une centaine de gènes. Parmi les gènes du régulon SoxRS on trouve ceux permettant de résister au superoxyde mais aussi aux antibiotiques. J’ai montré qu’en présence de phénazine méthosulfate (PMS), un composé redox actif, la machinerie de biogénèse des centres Fe-S utilisée pour la maturation de SoxR est différente suivant les conditions environnementales. En effet, en aérobie la maturation de SoxR est assurée par la machinerie SUF, alors qu’en anaérobie c’est la machinerie ISC qui intervient. J’ai également étudié l’importance de SoxR, et des machineries ISC et SUF, dans la résistance aux antibiotiques induite par la présence de PMS. J’ai montré qu’en présence de PMS, E. coli peut résister à la norfloxacine, par un mécanisme SoxR dépendent, et ceci quelque soit la machinerie de biogénèse des centres FeS présente. D’autre part, j’ai étudié l’impact des conditions environnementales, comme la teneur en CO2 dans l’atmosphère sur la capacité d’ E. coli à résister au stress oxydant. J’ai testé, expérimentalement les prédictions obtenues par un modèle d’équations différentielles permettant de simuler la concentration des ROS dans la cellule. J’ai montré que le CO2 a un effet de protection lors d’un stress au H2O2 probablement en capturant les HO• produits par la réaction de Fenton. / SoxR is a [2Fe-2S] cluster-containing transcriptional regulator that mounts the adaptive response allowing E. coli to tolerate superoxide-propagating compounds. When cells are exposed to redox cycling drugs the Fe-S cluster of SoxR undergoes a reversible univalent oxidation to yield the oxidized active protein. The only known target of SoxR is the soxS gene that is itself a transcriptional regulator activating the expression of more than 100 genes including those for superoxide and antibiotic resistance. I showed that the machinery used to mature SoxR under phenazine methosulfate (PMS) exposition, a redox cycling drug, was different depending on the environmental conditions used. In aerobiosis, the SUF machinery ensured SoxR maturation, while in anaerobiosis the ISC machinery was required. I also monitored the implication of SoxR, the ISC and SUF machineries, in antibiotic resistance induced by PMS exposition. I showed that E. coli can resist to norfloxacin under PMS exposition in a SoxR-dependent manner whatever the Fe-S cluster biogenesis machinery available. Last, I studied the impact of environmental conditions, such as atmospheric CO2 concentration, on the ability of E. coli to cope with oxidative stress. I have experimentally tested the predictions obtained by a mathematical model that simulates ROS dynamics. I showed that carbon dioxide has a protective effect on hydrogen peroxide stress likely by scavenging the radical hydroxyl produced by the Fenton reaction.

A restrição calórica (RC) estende a expectativa de vida de muitos organismos por mecanismos ainda em estudo. Entre os vários efeitos fisiológicos da RC encontra-se o aumento na biogênese mitocondrial, dependente de óxido nítrico (NO•), sintetizado pela enzima óxido nítrico sintase endotelial (eNOS). Um dos indutores fisiológicos mais potentes da eNOS é a insulina, cujos níveis plasmáticos são consideravelmente reduzidos nos organismos em RC. O objetivo deste trabalho foi investigar os mecanismos associados ao aumento da sinalização por NO• durante a RC in vivo e in vitro, e as conseqüências celulares do aumento de massa mitocondrial no que diz respeito à longevidade e capacidade respiratória celulares. Submetemos camundongos Swiss fêmeas à RC de 40% e observamos um considerável aumento tecido-específico na fosforilação basal de Akt e eNOS em músculo esquelético, tecido adiposo visceral e cérebro, os quais também apresentaram maior massa mitocondrial. A associação entre a sinalização por insulina, NO• e biogênese mitocondrial foi adicionalmente confirmada em um grupo de camundongos tratados com o desacoplador mitocondrial dinitrofenol (DNP), que também reduz a insulinemia e aumenta a longevidade em camundongos. Para o estudo mecanístico deste fenômeno, usamos soros de ratos Sprague-Dawley submetidos à RC de 40% ou alimentados ad libitum (AL) em cultura celular de células vasculares da musculatura lisa (VSMC), reproduzindo um protocolo descrito para RC in vitro. O uso do soro RC aumentou a fosforilação do receptor de insulina e Akt, a expressão de eNOS e nNOS (forma neural da NOS) e a fosforilação de eNOS, o que se refletiu em maior liberação de nitrito (NO2) no meio de cultura. Inibindo-se a Akt, todos os efeitos promovidos pela RC na sinalização por NO• foram revertidos. Ao se imunoprecipitar do soro a adiponectina, citocina conhecida por aumentar a sensibilidade à insulina, aumentada durante a RC, os efeitos do soro RC na via de sinalização de insulina foram abolidos e, conseqüentemente, os efeitos na sinalização por •NO foram prevenidos. Neurônios de células granulosas de cerebelo, que não expressam eNOS, apenas nNOS, foram cultivados com os soros AL ou RC, e também apresentaram considerável aumento na sinalização por •NO. Estas alterações induziram a biogênese mitocondrial e capacidade respiratória, e foram associadas à maior longevidade celular. Os mesmos efeitos mitocondriais foram observados em células secretoras de insulina, INS1, entretanto a secreção de insulina em resposta à glicose tornou-se inibida, por um mecanismo desconhecido, porém associado a reduzidos níveis intracelulares de espécies oxidantes, moléculas-chave para a secreção de insulina; e à alteração da morfologia mitocondrial, provavelmente devido à maior expressão de mitofusina-2 (Mfn-2). Ao se nocautear a Mfn-2, houve um aumento na geração de EROs e as células em RC passaram a secretar insulina a níveis comparáveis aos das células controle. Concluímos que durante a RC a maior sensibilidade à insulina aumenta a atividade de eNOS, via Akt, associada à maior biogênese mitocondrial. A adiponectina é uma molécula-central nestes eventos. A expressão de nNOS também é afetada, por mecanismos desconhecidos. O aumento de biogênese mitocondrial eleva a capacidade respiratória celular e impacta positivamente a longevidade in vitro. A alteração da morfologia mitocondrial associa-se a alterações na produção de oxidantes intracelulares e mudanças na secreção de insulina. / Calorie restriction (RC) is known to extend the lifespan in many organisms, and its mechanisms of action are still under investigation. Enhanced mitochondrial biogenesis driven by nitric oxide (•NO), synthesized by the endothelial nitric oxide synthase (eNOS), is proposed to be a CR central effect. Insulin is one of the most potent physiological activators of eNOS. However, plasmatic insulin levels are dramatically reduced in organisms under CR. The goal of this work was uncover the mechanisms associated with enhanced •NO signaling during CR, in vivo and in vitro, as well as the cellular consequences of increased mitochondrial mass, regarding lifespan and reserve respiratory capability. Female Swiss mice were submitted to 40% of CR. A tissue-specific (skeletal muscle, abdominal adipose tissue and brain) increment in basal Akt and eNOS phosphorylation, which was related to enhanced mitochondrial biogenesis, was observed. Indeed, this association was also verified in tissues from mice treated with low doses of a mitochondrial uncoupler, dinitrophenol (DNP). To unveil the mechanism behind the insulin signaling effects on •NO levels, serum from Sprague-Dawley rats submmited to 40% of CR was used to culture in VSMC cells, an in vitro CR protocol. CR sera enhanced insulin receptor (IR) and Akt phosphorylation, as well as nitrite (NO2-) accumulation in the culture media, the expression of eNOS and nNOS (neural NOS isoform) and eNOS phosphorylation. The effects of CR sera were reversed by Akt inhibition. The immunoprecipitation of serum adiponectin, a cytokine known to improve peripheral insulin sensitivity, also reversed the CR serum effects on insulin and •NO signaling. Cerebellar neurons, which do not express eNOS, just nNOS, were also cultured with CR or AL serum and also presented striking increments in •NO signaling, associated with mitochondrial biogenesis, increased reserve respiratory capability and lifespan extension. The mitochondrial effects promoted by CR were also observed in insulin secreting cells (INS1). However, under the CR condition, insulin secretion stimulated by glucose was impaired. The likely explanations are reduced mitochondrial reactive oxygen species (ROS) generation, or the alteration in mitochondrial morphology, associated, in our model, with enhanced mitofusin-2 expression (Mfn-2). In cells which the Mfn-2 was knocked down, insulin secretion in CR and AL groups was responsive to glucose at the same level, and the intracellular oxidants levels were much higher. Overall, CR improves •NO signaling due to enhanced insulin sensitivity, through Akt, and results in mitochondrial biogenesis. Adiponectin is a key molecule in this phenomenon. Increments in mitochondrial mass enhance the cellular reserve respiratory capability and lifespan. Mitochondrial morphology alterations are associated with possible decreases in ROS generation and impaired insulin release, maintained the low levels of plasmatic insulin.

A fibrose hepática é uma patologia que acompanha outras doenças crônicas do fígado como a cirrose e o hepatocarcinoma. As células estreladas hepáticas (HSC, do inglês hepatic stellate cells) compõem uma população celular heterogênea que se caracteriza por transitar entre dois fenótipos. As células com fenótipo quiescente possuem a capacidade de armazenar vitamina A em gotas lipídicas. Os insultos ao fígado desencadeiam uma resposta inflamatória que gera estímulos parácrinos e autócrinos mediados por citocinas e espécies reativas. Neste contexto, as HSC assumem um fenótipo ativado fibrogênico e tornam-se responsáveis pela cicatrização hepática. Danos crônicos ao fígado levam a uma deposição de matriz extracelular exagerada que configura o estado patológico da fibrose. O resveratrol (RSV – 3,4’,5-tri-hidroxi-trans-estilbeno) é uma fitoalexina produzida por algumas espécies de plantas. Inúmeros efeitos benéficos à saúde são atribuídos ao RSV por causa do seu potencial antioxidante, antiinflamatório e pró-apoptótico. Estudos anteriores mostraram que tratamento da GRX, uma linhagem murina de HSC ativadas, com concentrações de RSV próximas as biodisponíveis (0,1 a 1 μM) resultou em parada do ciclo na fase S com consequente inibição de proliferação celular, um efeito associado à citotoxicidade e que pode favorecer a resolução da fibrose hepática. Neste estudo, por técnicas espectrofotométricas, foi demonstrado que tratamento da GRX por 24 horas com concentrações entre 0,1 a 50 μM de RSV promoveu um efeito pró-oxidante que causa uma citotoxicidade dependente da dose, bastante aumentada no grupo tratado com a concentração mais alta. Os efeitos citotóxicos atenuados encontrados nas células tratadas por 120 horas sugerem que a GRX pode se tornar resistente a estes efeitos. O potencial pró-oxidante do RSV foi o ponto de partida para investigar a possibilidade de que esta fitoalexina provocasse uma alteração no metabolismo mitocondrial da GRX. Para isso, os efeitos do RSV (1 a 50 μM) na função mitocondrial, na indução de morte mediada por estas organelas e na autofagia/mitofagia foram investigados por técnicas de espectrofotometria, de imunocitoquímica, de citometria de fluxo, de microscopia confocal e de microscopia eletrônica de transmissão em GRX tratadas por 24 e 120 horas. Foi demonstrado que todas as concentrações de RSV promovem apoptose por meio da ativação de caspases, alteram a dinâmica/função mitocondrial e induzem o aumento de autofagia/mitofagia na GRX. No entanto, o RSV provocou biogênese de mitocôndrias nos grupos tratados com 1 e 10 μM, enquanto que o tratamento com 50 μM causou dano celular evidente na GRX, sem induzir biogênese de mitocôndrias. Desta forma, é possível que a citotoxicidade “dose-dependente” do RSV, que causa a morte celular e dano oxidativo em 24 horas de tratamento, esteja relacionada com o desequilíbrio entre a indução concomitante de apoptose mediada por dano mitocondrial, autofagia/mitofagia e biogênese de mitocôndrias. Por fim, foi investigada a liberação de TNF-α, Interleucina-6 e Interleucina-10 pela GRX tratada por 24 e 120 horas com RSV (0,1 a 50 μM), considerando o papel antiinflamatório do RSV e o papel das HSC ativadas na sinalização autócrina que contribui para a modulação fenotípica destas células. Foi demonstrado que o tratamento da GRX com RSV por 24 e 120 horas induziu a redução da liberação de Interleucina-6; enquanto que a liberação de TNF-α e Interleucina-10 foi aumentada. Estes resultados confirmam um efeito antiinflamatório do RSV que deve contribuir na prevenção da ativação ou da perpetuação do estado ativado das HSC por meio de sinalização autócrina. Ainda que a concentração do RSV seja importante para efetivamente induzir a morte das HSC ativadas, o tratamento com esta fitoalexina pode ser promissor para a resolução da fibrose hepática por diminuir a população de células ativadas e, possivelmente, prevenir a perpetuação do estado fenotípico ativado. Estudos avaliando indicadores de quiescência em células tratadas são ainda necessários para desvendar completamente os efeitos do RSV quanto às possibilidades de inibição da perpetuação ou reversão fenotípica das HSC ativadas. / Liver fibrosis is a disease that accompanies other hepatic chronic diseases such as cirrhosis and hepatocellular carcinoma. Hepatic stellate cells (HSC) are a heterogeneous cell population characterized by transiting between two phenotypes. Cells with a quiescent phenotype are able to store vitamin A into lipid droplets. Damage to the liver trigger an inflammatory response that generates paracrine and autocrine stimulation mediated by cytokines and reactive species. In this context, HSC assume an activated and fibrogenic phenotype responsive for hepatic wound-healing. Chronic insults to the liver lead to an excessive deposition of extracellular matrix that configures the pathological state of fibrosis. Resveratrol (RSV – 3,4’,5-tri-hidroxi-trans-stilbeno) is a phytoalexin produced by some species of plants. Several beneficial effects are attributed to this molecule due to its antioxidant, antiproliferative and pro-apoptotic potential. Previous studies showed that treatment with bioavailable concentrations of RSV (0.1 to 1 μM) promoted an arrest cycle at the S phase in GRX, a murine activated HSC model, leading to cell proliferation inhibition, a cytotoxic effect that contributes to the liver fibrosis resolution. In this study, it was shown by spectrophotometric techniques that GRX treatment for 24 hours at concentrations between 0.1 to 50 μM of RSV promoted a fairly clear pro-oxidant effect that causes a dose-dependent cytotoxicity that was higher in the group treated with 50 μM. The attenuated cytotoxicity found after 120 hours of GRX treatment suggest that these cells became resistant to this effect. The pro-oxidant potential of RSV was the starting point for investigating the possibility that this phytoalexin would cause a change in the GRX mitochondrial metabolism. Thus, the effects of RSV (1 to 50 μM) on altering the mitochondrial function, on inducing mitochondrial-mediated cell death, and autophagy/mitofagia were investigated in GRX treated for 24 and 120 hours by spectrophotometric techniques, immunocytochemistry, flow cytometry, confocal microscopy, and transmission electron microscopy. All the RSV concentrations promote cell apoptosis through caspases activation, alter the mitochondrial dynamics and function, and induce an increase of autophagy/mitofagia. Curiously, only 1 and 10 μM of RSV induced mitochondrial biogenesis in GRX, while the highest concentration caused an evident cell damage without inducing mitochondrial biogenesis. Thus, it is possible that the "dose-dependent" cytotoxicity of RSV, which causes cell death and oxidative damage in 24 hours of treatment, is related to an imbalance between the concomitant induction of mitochondrial-mediated apoptosis, autophagy/mitofagia, and mitochondrial biogenesis. Finally, it was investigated the release of TNF-α, Interleukin-6 and Interleukin-10 by GRX treated for 24 and 120 hours with RSV (0.1 to 50 μM), considering the anti-inflammatory role of RSV and the autocrine signalling role of HSC that contributes to the perpetuation of its activated phenotype. It was demonstrated that GRX treatment with RSV for 24 and 120 hours reduced the release of Interleukin-6 in the culture medium; whereas the release of TNF-α and Interleukin-10 was increased. These results confirm the anti-inflammatory properties of RSV and may contribute to the prevention of HSC activation through autocrine signalling. Although RSV concentration is important to effectively induce activated HSC death, cells treatment with this phytoalexin may be promising for liver fibrosis resolution through decreasing the population of activated cells or through preventing the perpetuation of activated state of HSC. Future studies evaluating the quiescence indicators of GRX under RSV treatment are still needed to fully unravel the effects of this phytoalexin on inhibiting the perpetuation of activated HSC or reversing its activated phenotype.

La biogenèse des ribosomes eucaryotes est un processus complexe qui implique la production et l'assemblage de 4 ARNr et 80 protéines. La production des deux sous-unités du ribosome, 40S et 60S, débute dans le nucléole par la synthèse d'un long précurseur commun contenant les séquences des ARNr matures et se termine dans le cytoplasme où ont lieu les dernières étapes d'assemblage des protéines ribosomiques et de clivage des ARNr. La production de ribosomes nécessite la participation de plus de 200 co-facteurs, qui catalysent les clivages et modifications des ARNr, coordonnent leur repliement et leur association aux protéines ribosomiques, et assurent des étapes de contrôle-qualité. Ces protéines sont associées aux particules en cours de maturation et absentes des sous-unités matures. Cette voie de synthèse, globalement conservée chez les eucaryotes, a été principalement étudiée chez la levure. Cependant, des études récentes ont montré des différences importantes de ce processus entre levure et mammifères. Un des verrous importants pour comprendre la fonction des co-facteurs, est l'absence de données sur la structure des précurseurs des sous-unités ribosomiques. J'ai donc entrepris une étude structurale de l'assemblage cytoplasmique de la petite sous-unité ribosomique chez l'homme par cryo-microscopie électronique à transmission. Le but de ma thèse était de déterminer la structure 3D des précurseurs de la petite sous-unité ribosomique purifiés à différentes étape de leur maturation. Ce travail a été conduit en collaboration avec l'équipe du Pr. Ulrike Kutay (ETH Zurich) pour la purification des particules pré-40S à partir de cellules humaines. La première structure 3D de particule pré-40S intermédiaire purifiée en étiquetant le co-facteur LTV1 a été déterminée à 19Å de résolution. Dans un deuxième temps, la structure 3D de la particule pré-40S tardive purifiée à via RIO1(KD) a aussi été déterminée à 15Å de résolution. Ces données nous ont permis de proposer un modèle de localisation des co-facteurs sur les précurseurs de la petite sous-unité ribosomique et de montrer une nouvelle différence dans la formation de la petite sous-unité chez l'Homme comparé à la levure, du fait de la présence de la protéine RACK1 sur les particules pré-40S humaines. La comparaison des structures des précurseurs de la petite sous-unité obtenues a permis de mettre en lumière l'existence de remodelages structuraux de la particule pré-40S au cours de sa maturation. Ce travail met en lumière les premières structures 3D de particules pré-40S humaines et pose les fondements méthodologiques d'explorations futures de la dynamique structurale des particules pré-ribosomiques. / Ribosome biogenesis is a complex process that requires the production and the correct assembly of the 4 rRNAs with 80 ribosomal proteins. In Human, the production of the two subunits, 40S and 60S, is initiated by the transcription of a pre-ribosomal rRNA precursor to the mature 18S, 5.8S, and 28S rRNAs by the RNA polymerase I, which is chemically modified and trimmed by endo- and exoribonuclease, in order to form the mature rRNAs. The nascent pre rRNA associated with ribosomal proteins, small ribonucleoprotein particles (snoRNP) and so called co-factors leading to the assembly of an initial 90S particle. This particle is then split into pre-40S and pre-60S pre-ribosomal particles that fallow independent maturation to form the mature subunit into the cytoplasm. Production of eukaryotic ribosomes implies the transient intervention of more than 200 associated proteins and ribonucleoprotein particles, that are absent from the mature subunits. Synthesis of ribosome, globally conserved in eukaryotes, has been principally studied in yeast. However, recent studies reveal that this process is more complex in human compared in yeast. An important bottleneck in this domain is the lack of structural data concerning the formation of intermediate ribosomal subunits to understand the function of assembly factors. Determination of the structural remodeling of pre-ribosomal particles is crucial to understand the molecular mechanism of this complex process. So I have undertaken a structural study on the assembly of the small ribosomal subunit using cryo-electron microscopy and image analysis. The goal of my thesis is to determine the 3D structures of human pre-40S particles at different maturation stages to see the structural remodeling that occurs during the biogenesis of the small ribosomal subunit. We are collaborating with the group of Pr Ulrike Kutay at ETH Zurich, who purify human pre-40S particles. The 3D structures of human pre-40S particles purified at an intermediate and late maturation stages, has been determined with a resolution of 19 and 15Å respectively. Supplementary densities, compared to the mature subunit, indicate the presence of assembly factors and show the unexpected presence of the RACK1 protein in the precursor of the human small ribosomal subunit in the cytoplasm. The comparison of the 3D structures of human pre-40S particle allows showing the structural remodeling that occur during the maturation of the small ribosomal subunit. This work provides the first 3D structure of human pre-40S particles and laid the methodological foundations for future exploration of the structural dynamics of pre-ribosomal particles.