A presente tese versa sobre estudos realizados visando a identificação de novos agentes virais em frangos comerciais. No primeiro capítulo, a identificação do girovírus aviário tipo 2 (AGV2) é reportada. Um genoma viral de 2383 nt foi amplificado a partir soros de frangos comerciais por amplificação randômica de DNA. A análise da sequência do produto amplificado, revelou que cerca de 40% das sequencias de nucleotídeos apresentavam similaridade com o genoma do vírus da anemia infecciosa das galinhas (CAV). Dado o baixo grau de identidade com o CAV, o genoma identificado justificou a proposição de um novo tipo de vírus, dentro do gênero gyrovírus foi denominado “girovírus aviário tipo 2” (AGV2). O genoma do AGV2 tem organização semelhante a do CAV, com percentagens de similitude de aminoácidos nas regiões codificantes, correspondentes às proteínas virais VP1, VP2 e VP3 do CAV de 38,8%, 40,3% e 32,2%, respectivamente. A fim de analisar a amplitude da disseminação deste agente, foi realizado um estudo para identificar a ocorrência do AGV2 em granjas de frangos de outras regiões. Para atingir esse objetivo, uma PCR específica ao AGV2 foi desenvolvida para amplificar o DNA viral extraído de bulbos de penas da asa e órgãos de frangos. Essa técnica permitiu a detecção do AGV2 em aves de outros locais na Região Sul do Brasil. O DNA viral foi detectado em 90,7% (98/108) das amostras coletadas no estado do Rio Grande do Sul e 60,4% (29/48) das amostras do estado de Santa Catarina. Os mesmo primers da PCR foram adaptados para examinar tecidos de cérebro de galinhas da Holanda. Nessas amostras o DNA do AGV2 foi detectado em nove das 21 (42,9%) amostras de tecidos cerebrais em aves com lesões hemorrágicas. Essas descobertas fornecem evidências de que infecções de AGV2 são generalizadas e não se restringem a Região Sul do Brasil. Além disso, esses estudos permitiram a identificação de variantes do DNA genômico do AGV2. Análises filogenéticas demostraram que os genomas examinados poderiam ser divididos em três grupos, com base em diferenças nos genes das ORFs das proteínas VP2 e VP3. Em conclusão, a presente tese abrange estudos da identificação de um vírus aviário, até então desconhecido, denominado girovírus aviário tipo 2, que encontra-se amplamente distribuído. A associação deste agente com enfermidades em aves será tema de estudos que estão sendo realizados. / This thesis concerns studies carried out in search for new viral agents in commercial poultry flocks. In the first chapter, the identification of the genome of avian gyrovirus type 2 (AGV2), a new Gyrovirus, is reported. The viral genome the 2383-nucleotide sequence was amplified from sera of commercial broilers by random DNA amplification. Sequence analysis of the amplified product showed that the putative viral sequence had about 40% nucleotide similarity with the genome of its closest relative, chicken anemia virus (CAV). Such low degree of nucleotide similarity justified its classification as a new virus type within the genus, to which the name avian gyrovirus type 2. The amino acid similarity between the predicted viral proteins VP1, VP2 and VP3 of AGV2 and those of CAV was 38.8%, 40.3%, and 32.2%, respectively. In order to examine the amplitude of dissemination of this agent, it became necessary to carry out a search for AGV2 genomes in poultry flocks from other regions. To achieve such objective, an AGV2-specific PCR was designed to amplify viral DNA from nuclei acid extracted from poultry feather shafts. This allowed detection of AGV2 genomes in flocks from other locations in Southern Brazil. Viral DNA was detected in 98/108 (90.7%) of samples collected in the state of Rio Grande do Sul and 29/48 (60.4%) of the samples collected in the state of Santa Catarina. The same PCR primers were adapted to examine brain tissues of chickens from the Netherlands. In such samples, AGV2 DNA was detected in nine out of 21 (42.9%) brain tissue samples from birds with haemorragic lesions. These findings provided evidence that AGV2 infections are widespread and are not restricted to Southern Brazil. In addition, these studies allowed the identification of genomic variants of AGV2. Phylogenetic analyses demonstrated that such genomes could be divided into three clusters. In conclusion, this thesis encompasses studies on the identification of a previously unreported virus, named avian gyrovirus 2, which was later shown to be widely distributed. The relationship between this agent and disease in poultry will be subject of further studies which are being performed in continuation to this work.

För att klara klimatmålen i Sverige och som EU-land behövs det genomföras fler energieffektiviseringar. Syftet med detta arbete har därför varit att jämföra två olika ventilationssystem,VAV-system och CAV-system inför en ombyggnation i Björkhöjdskolan som befinner sig i Borås kommun. Jämförelsen omfattas av en energi- och kostnadsanalys på de olika systemen föratt se vilket som drar mest energi och vilket som är mest kostnadseffektivt. Metodiken för att lösa arbetets frågeställningar har varit genom informationssamling från projektets deltagare och beräkningsgång i Microsoft Excel och Google kalkyl. Resultatet visar att VAV-system är den mest energieffektiva valet av ventilationssystem. Den har en årlig energianvändning på 7984 kWh/skolår medan CAV-systemet använder 22 087kWh/skolår. Den ekonomiska analysen visar att VAV-systemet har en högre LCC-kostnad jämfört med CAV-systemet. Den totala LCC-kostnaden för VAV-systemet är 2 128 045 kr och 2 027 494kr för CAV-systemet. Däremot har VAV-systemet en lägre nuvärdeskostnad än CAV-systemet. Om verksamheten hade omfattats av en säker beläggningsgrad skulle det totala luftflödet varit lägre och ett mindre luftbehandlingsaggregat hade kunnat väljas. Om kalkylräntan sjunker någon procent och energiprishöjningen höjs någon procent hade skillnaden i pris mellan systemen varit närmare noll. Förslag på framtida analys kan vara att göra en driftoptimering när en beläggningsgrad finns, då kan det framföras en tydlig motivering till att välja VAV-system som är bäst ur miljösynpunkt. / In order to reach the climate goals in Sweden that the EU has set, energy efficient solutions in buildings are required all around the country. The purpose of this report has therefore been to compere two different ventilations systems, VAV-system (variable air velocity) and CAV(constant air velocity) in a reconstruction of an a school buiding that is located in Borås. The comparison has involved both an energy- and economic analysis of the two different ventilation systems. The method to complete this report has been through gathering information from the project participants and calculations using Microsoft Excel and Google calculation. The result of this study makes it clear that a VAV-system is the best energy efficient choice of ventilation system. The yearly energy use of the VAV-system is 7984 kWh/school year while CAV-system uses 22087 kWh/school year. The economic analysis shows that the VAV-system has a higher LCC-cost due to the high investment sum. The total LCC-cost for VAV-system is 2128 045 SEK and 2 027 494 SEK for the CAV-system, however the present value for the VAVsystemis lower than the CAV-system. If the school could secure an occupancy the total air flow of the air handling unit (AHU) could be reduced. This could potentially lead to a change to a lower sized AHU that gives a lower cost of the AHU and further energy savings. A suggestion is to evaluate this further in a later stage of the project in order to optimize the AHU when the occupancy is given and more certain. In addition this could motivate to choice of the more energy efficient VAV-system.

Skeletal muscle associated disorders are correlated with significant morbidity, including frailty, fatigue, reduced mobility and poor resistance to treatments as well as mental health repercussions resulting from a loss of independence. Thus, conditions affecting skeletal muscle put considerable pressure on the health care system. In response to injury, skeletal muscle can regenerate and the molecular mechanisms underlying this unique process has been the subject of intense research with the goal of developing better treatment modalities for muscle-related diseases. Our laboratory has previously demonstrated that C/EBPβ is a negative regulator of postnatal myogenic differentiation. Expressed in muscle satellite cells (MuSCs), the primary source of regenerative potential in skeletal muscle, C/EBPβ inhibits entry into the myogenic differentiation program and is required for MuSC self-renewal after injury. Despite the important role of C/EBPβ in muscle homeostasis, little is known about the genes it regulates. To better understand how C/EBPβ regulates these processes, I used both a candidate-based approach to identify the inhibitor of DNA binding and differentiation protein ID3 as a C/EBPβ target gene that mediates inhibition of myogenic differentiation, and an unbiased approach using RNA-seq. I compared gene expression profiles from C2C12 myoblasts overexpressing C/EBPβ to control cells under growth and differentiation conditions. I observed that more than 20% of the molecular signature found in quiescent MuSCs is regulated by C/EBPβ. Caveolin- 1 was implicated as a direct target of C/EBPβ and part of the molecular mechanism by which C/EBPβ maintains MuSCs quiescence. Interestingly, the RNA-seq data identified numerous C/EBPβ-regulated secreted proteins including growth factors and cytokines. Co-culture experiments indicate that secreted proteins mediate the inhibition of cell differentiation and fusion, suggesting that C/EBPβ functions in an autocrine and paracrine fashion to influence activation of myoblasts in the absence of cell-to-cell contact. Given the role of C/EBPβ in regulating secretory proteins that inhibit myogenic differentiation, I examined the requirement of C/EBPβ in the expression of anti myogenic proteins secreted by cancer cells that affect MuSCs function and drive the development of cancer cachexia. Indeed, the expression of C/EBPβ in cancer cells was found to be required for the production of a cachexia-inducing secretome by tumours in vitro and in vivo. Furthermore, C/EBPβ was found to be sufficient to convert non-cachectic tumours into cachexia-inducing ones. In comparing differentially expressed C/EBPβ-regulated secreted protein transcripts from our RNA-seq data to that from 27 different types of human cancers revealed an ~18% similarity between C/EBPβ-regulated secreted proteins and those enriched in cachectic tumours including pancreatic, gastric and brain cancers. Three of these C/EBPβ-regulated secreted proteins (SERPINF1, TNFRSF11B and CD93) were tested further and found to be inducers of muscle atrophy. This work provides molecular insight into the role of C/EBPβ in the regulation of MuSC function and the regulation of cachexia-inducing factors by tumours, placing C/EBPβ as a novel therapeutic target for the treatment of cancer cachexia and other muscle-related diseases.

Sementes de Sesbania virgata (Cav.) Pers. acumulam suas reservas de carbono no endosperma na forma de um polissacarídeo de parede celular, o galactomanano. Os galactomananos são polissacarídeos constituídos de uma cadeia principal de resíduos de D-manose ligadas β-1,4, ramificada por resíduos de D-galactose α-1,6 ligados. A mobilização deste ocorre após a germinação e envolve três enzimas hidrolíticas (α-galactosidase, endo-β-mananase e exo-β-manosidase). A α-galactosidase é a primeira enzima atuar sobre o galactomanano hidrolisando as ligações α-1,6 das galactoses ramificadas a cadeia principal de manano (ligados β-1,4), permitindo a ação da endo-β-mananase, que hidrolisará o polissacarídeo a oligossacarídeos, onde a β-manosidase atuará (ligações β-1,4), transformando oligossacarídeos a monossacarídeos a serem utilizados no desenvolvimento do embrião. Buscando a compreensão das características da α-galactosidase e modo de ação sobre o galactomanano, procedeu-se com a purificação, em três etapas,e caracterização bioquímica (pH ótimo, temperatura ótima e aspectos cinéticos) da α-galactosidase de sementes de Sesbania virgata (Cav.) Pers. Além disso, visando evidenciar a modulação da enzima endo-β-mananase pela distribuição de ramificações de galactose no galactomanano (estrutura fina do galactomanano), procedeu-se com hidrólises enzimáticas do galactomanano de Sesbania virgata (Cav.) Pers. utilizando a enzima endo-β-mananase de Aspergillus niger (Megazyme®) somente ou em conjunto com a α-galactosidase semipurificada de Sesbania virgata (Cav.) Pers. (Capítulo 1) ou com a α-galactosidase comercial de Cyamopsis tetragonoloba (Megazyme®), seguido de análise dos oligossacarídeos por HPAEC-PAD (High Performance Anion Exchange Chromatography with Pulsed Amperometric Detection). Também procedeu-se com hidrólises enzimáticas de galactomananos de 6 espécies com razão manose:galactose variando de 1:1 a 150:1 com endo-β-mananase de Aspergillus niger (Megazyme®) e análise dos oligossacarídeos produzidos por HPAEC-PAD. A α-galactosidase semipurificada possui, aproximadamente, 42 kDa de peso molecular em condições desnaturantes e, aproximadamente 72 kDa de peso molecular na forma nativa, sugerindo que a enzima assuma estrutura quartenária. A temperatura ótima apresentada se encontra na faixa de 50°C a 55°C, pH ótimo na faixa de 4,4 a 5,4, Km= 1,8276 mM e a velocidade máxima de 0,5024 μmolGal.min-1.mgprot-1. A espectrometria de massas gerou os fragmentos: ALADYV-HSK-RMPGSLGHEE-QDAK-TT-GDIEDNWNSM-TSIADS NDKW-ASYAGPGGWN-DPDMLEVGNG-GMTTEEYR-AP-LLVGCDIR-VAVIL-WNR, estando a proteína referente a esta sequência relacionada à mobilização de reserva. Durante a purificação e sequenciamento interno da α-galactosidase e demais proteínas foram detectadas isoformas da α-galactosidase de pesos moleculares variados (42 kDa a 20 kDa). Sugere-se que estas isoformas encontradas inicialmente na purificação estejam relacionadas com outras funções da α-galactosidase, enquanto as isoformas encontradas após todas as etapas de purificação e identificação por espectrometria de massas estejam relacionadas com ativação e adaptação da α-galactosidase durante todo o processo de mobilização de reservas. Os dados gerados das comparações dos oligossacarídeos produzidos em cada hidrólise sugerem que as ramificações do galactomanano podem modular o reconhecimento de sítios de clivagem pela endo-β-mananase: (1) existe a produção de oligossacarídeos limites de digestão F1, F2 e F3 após hidrólise do galactomanano com endo-β-mananase, como demonstrado para xiloglucanos; (2) os oligossacarídeos F1 possuem proporções distintas quando da hidrólise do galactomanano com endo-β-mananase em diferentes concentrações (ExP I e EXP IV), evidenciando preferência por sítios com menor grau de galactosilação; (3) a presença da α-galactosidase diminui a produção dos oligossacarídeos F2 e F3, mostrando que estes não possuem resistência intrínseca a hidrólise e que a reação atinge o equilíbrio mesmo quando ainda existem sítios de clivagem ainda disponíveis (EXP III); (4) polissacarídeos com estruturas diferentes, razão manose:galactose variando entre 150:1 a 1:1, são digeridos em diferentes taxas de hidrólise pela mesma enzima, evidenciando que a ramificação com galactose dificulta a ação da endo-β-mananase. Dessa forma, sugere-se que a estrutura do polissacarídeo galactomanano também contenha, pelo menos, parte da informação requerida para seu próprio metabolismo, código para a sua degradação, estando esta informação contida na distribuição das ramificações com resíduos de D-galactose. Sendo assim, sugere-se que as diferentes isoformas da α-galactosidase relacionadas à degradação da reserva de galactomanano de sementes de Sesbania virgata (Cav.) Pers. seriam produto da ação proteolítica da própria enzima a fim de melhorar a afinidade da α-galactosidase ao substrato durante o processo de mobilização de reserva. O aumento da afinidade da α-galactosidase ao substrato durante todo o processo de mobilização garantiria a liberação das ramificações com galactose de forma contínua, permitindo e aumentando a eficiência da ação da enzima endo-β-mananase aos sítios de clivagem, garantindo a degradação do polissacarídeo a oligossacarídeos de forma regulada, passível de bloqueio, pelo acúmulo de oligossacarídeos e galactose livre que inibem a ação das enzimas endo-β-mananase e α-galactosidase, respectivamente, e dificultando a ação de microorganismos, propiciando ao embrião a maior quantidade de açúcares para o seu desenvolvimento, aumentando as chances de sucesso no estabelecimento da plântula / The seeds of Sesbania virgata (Cav.) Pers. have an endosperm which accumulates galactomannan as a storage polysaccharide in the cell walls. Galactomannans are composed of a linear backbone of β-(1,4)-linked D-mannose residues with D-galactose α-(1,6)-linkages substitutions. The galactomannans are hydrolysed after protrusion of the radicle. This process is perfomed by three enzymes (α-galactosidase, endo-β-mannanase and exo-β-manosidase). The α-galactosidase is the first enzyme to cleave the polysaccharides, removing the D-galactose residues, allowing the performance of the endo-β-mannanase, which hydrolyses the mannan backbone to mannan oligosaccharides. The last part of the process includes exo-β-manoside, that cleaves the mannan oligosaccharides to mannose residues, which could be used by the embryo during growth. Aiming at understanding the function of ?-galactosidase in the process of galatomanannan degradation, we studied its mode of action on mannans and galactomannans. The α-galactosidase of Sesbania virgata (Cav.) Pers. was purified and characterized (pH and temperature optimum and the enzyme kinetics). We found that the semipurified α-galactosidase molecular weight was 42kDa at denaturating conditions, but in native conditions was 72kDa, suggesting that the enzyme has a quaternary structure. The enzyme optimum pH was between 4,4-5,4, optimum temperature between 50°C-55°C, Km= 1,8276 mM and Vmáx= 0,5024 μmolGal.min-1.mgprot-1. Mass spectrometry measures resulted the following fragments: ALADYV-HSK-RMPGSLGHEE-QDAK-TT-GDIEDNWNSMTSIADS-NDKW-ASYAGPGGWN-DPDMLEVGNG-GMTTEEYR-AP-LLVGCDIR-VAVIL-WNR, being the protein from this sequence related with storage mobilization. Possible α-galactosidase isoforms were detected during the purification, suggesting other functions for the enzyme. The α-galactosidase isoforms detected after all purification steps and with measured mass spectrometry (from 42kDa to 20kDa) should be related to the storage mobilization. We suggest that the α-galactosidase isoforms in Sesbania virgata (Cav.) Pers. seeds represents products of the enzyme self-digestion, this process being correlated with the enzyme/polysaccharide affinity and at last, correlated to the galactomannan mobilization. An extract semipurified from Sesbania virgata (Cav.) Pers. and enriched with α-galactosidase activity, was used along with endo-β-mannanase from Aspergillus niger (Megazyme®) or both endo-β-mannanase and α-galactosidase (semipurified from Sesbania virgata seeds - Chapter 1- or commercial enzyme from Cyamopsis tetragonoloba - Megazyme®) were used to study the fine structure of galactomannans. Hydrolysis of galactomannans from six species with different mannose:galactose (1:1 to 150:1) ratio were performed with endo-β-mananase from Aspergillus niger. The oligosaccharides from all hydrolysis were analyzed by HPAEC-PAD (High Performance Anion Exchange Chromatography with Pulsed Amperometric Detection). The hydrolysis fragments data (HPAEC-PAD) suggest that the side-chains of the polysaccharides can modulate the hydrolytic sites recognition on the galactomannan by the endo-β-mannanase. This conclusion is supported by: (1) the presence of limited digest oligosaccharides F1 and dimmers (F2) and trimers (F3) of the F1 oligosaccharides; (2) the presence of different F1 oligosaccharides proportions after hydrolysis with endo-β-mannanase at different concentrations, showing preference on less-branched hydrolytic sites; (3) the α-galactosidase digestion avoided the accumulation of oligosaccharides F2 and F3, showing that these oligosaccharides do not present intrinsic resistance to hydrolysis and that the reaction reaches an equilibrium even when sites of hydrolysis are still available; (4) polymers with different fine structure (ratio mannose:galactose 1:1 to 150:1) were hydrolysed at different rates by the endo-β-mannanase, showing that galactose branching interferes on the enzyme action. Considering that, the branching pattern of the polysaccharide seems to have direct influence on the interaction of the enzyme with substrate; we suggest that the structure of the galactomannan holds part of information required for its own degradation. The higher enzyme x substrate affinity, ensure the galactose branches digestion, improving the endo-β-mannanase action, ensuring the degradation of the polysaccharides to oligosaccharides. This highly regulated degradation process prevents microorganisms predation and increases the plantlet establishement

Sementes de Sesbania virgata (Cav.) Pers. acumulam suas reservas de carbono no endosperma na forma de um polissacarídeo de parede celular, o galactomanano. Os galactomananos são polissacarídeos constituídos de uma cadeia principal de resíduos de D-manose ligadas β-1,4, ramificada por resíduos de D-galactose α-1,6 ligados. A mobilização deste ocorre após a germinação e envolve três enzimas hidrolíticas (α-galactosidase, endo-β-mananase e exo-β-manosidase). A α-galactosidase é a primeira enzima atuar sobre o galactomanano hidrolisando as ligações α-1,6 das galactoses ramificadas a cadeia principal de manano (ligados β-1,4), permitindo a ação da endo-β-mananase, que hidrolisará o polissacarídeo a oligossacarídeos, onde a β-manosidase atuará (ligações β-1,4), transformando oligossacarídeos a monossacarídeos a serem utilizados no desenvolvimento do embrião. Buscando a compreensão das características da α-galactosidase e modo de ação sobre o galactomanano, procedeu-se com a purificação, em três etapas,e caracterização bioquímica (pH ótimo, temperatura ótima e aspectos cinéticos) da α-galactosidase de sementes de Sesbania virgata (Cav.) Pers. Além disso, visando evidenciar a modulação da enzima endo-β-mananase pela distribuição de ramificações de galactose no galactomanano (estrutura fina do galactomanano), procedeu-se com hidrólises enzimáticas do galactomanano de Sesbania virgata (Cav.) Pers. utilizando a enzima endo-β-mananase de Aspergillus niger (Megazyme®) somente ou em conjunto com a α-galactosidase semipurificada de Sesbania virgata (Cav.) Pers. (Capítulo 1) ou com a α-galactosidase comercial de Cyamopsis tetragonoloba (Megazyme®), seguido de análise dos oligossacarídeos por HPAEC-PAD (High Performance Anion Exchange Chromatography with Pulsed Amperometric Detection). Também procedeu-se com hidrólises enzimáticas de galactomananos de 6 espécies com razão manose:galactose variando de 1:1 a 150:1 com endo-β-mananase de Aspergillus niger (Megazyme®) e análise dos oligossacarídeos produzidos por HPAEC-PAD. A α-galactosidase semipurificada possui, aproximadamente, 42 kDa de peso molecular em condições desnaturantes e, aproximadamente 72 kDa de peso molecular na forma nativa, sugerindo que a enzima assuma estrutura quartenária. A temperatura ótima apresentada se encontra na faixa de 50°C a 55°C, pH ótimo na faixa de 4,4 a 5,4, Km= 1,8276 mM e a velocidade máxima de 0,5024 μmolGal.min-1.mgprot-1. A espectrometria de massas gerou os fragmentos: ALADYV-HSK-RMPGSLGHEE-QDAK-TT-GDIEDNWNSM-TSIADS NDKW-ASYAGPGGWN-DPDMLEVGNG-GMTTEEYR-AP-LLVGCDIR-VAVIL-WNR, estando a proteína referente a esta sequência relacionada à mobilização de reserva. Durante a purificação e sequenciamento interno da α-galactosidase e demais proteínas foram detectadas isoformas da α-galactosidase de pesos moleculares variados (42 kDa a 20 kDa). Sugere-se que estas isoformas encontradas inicialmente na purificação estejam relacionadas com outras funções da α-galactosidase, enquanto as isoformas encontradas após todas as etapas de purificação e identificação por espectrometria de massas estejam relacionadas com ativação e adaptação da α-galactosidase durante todo o processo de mobilização de reservas. Os dados gerados das comparações dos oligossacarídeos produzidos em cada hidrólise sugerem que as ramificações do galactomanano podem modular o reconhecimento de sítios de clivagem pela endo-β-mananase: (1) existe a produção de oligossacarídeos limites de digestão F1, F2 e F3 após hidrólise do galactomanano com endo-β-mananase, como demonstrado para xiloglucanos; (2) os oligossacarídeos F1 possuem proporções distintas quando da hidrólise do galactomanano com endo-β-mananase em diferentes concentrações (ExP I e EXP IV), evidenciando preferência por sítios com menor grau de galactosilação; (3) a presença da α-galactosidase diminui a produção dos oligossacarídeos F2 e F3, mostrando que estes não possuem resistência intrínseca a hidrólise e que a reação atinge o equilíbrio mesmo quando ainda existem sítios de clivagem ainda disponíveis (EXP III); (4) polissacarídeos com estruturas diferentes, razão manose:galactose variando entre 150:1 a 1:1, são digeridos em diferentes taxas de hidrólise pela mesma enzima, evidenciando que a ramificação com galactose dificulta a ação da endo-β-mananase. Dessa forma, sugere-se que a estrutura do polissacarídeo galactomanano também contenha, pelo menos, parte da informação requerida para seu próprio metabolismo, código para a sua degradação, estando esta informação contida na distribuição das ramificações com resíduos de D-galactose. Sendo assim, sugere-se que as diferentes isoformas da α-galactosidase relacionadas à degradação da reserva de galactomanano de sementes de Sesbania virgata (Cav.) Pers. seriam produto da ação proteolítica da própria enzima a fim de melhorar a afinidade da α-galactosidase ao substrato durante o processo de mobilização de reserva. O aumento da afinidade da α-galactosidase ao substrato durante todo o processo de mobilização garantiria a liberação das ramificações com galactose de forma contínua, permitindo e aumentando a eficiência da ação da enzima endo-β-mananase aos sítios de clivagem, garantindo a degradação do polissacarídeo a oligossacarídeos de forma regulada, passível de bloqueio, pelo acúmulo de oligossacarídeos e galactose livre que inibem a ação das enzimas endo-β-mananase e α-galactosidase, respectivamente, e dificultando a ação de microorganismos, propiciando ao embrião a maior quantidade de açúcares para o seu desenvolvimento, aumentando as chances de sucesso no estabelecimento da plântula / The seeds of Sesbania virgata (Cav.) Pers. have an endosperm which accumulates galactomannan as a storage polysaccharide in the cell walls. Galactomannans are composed of a linear backbone of β-(1,4)-linked D-mannose residues with D-galactose α-(1,6)-linkages substitutions. The galactomannans are hydrolysed after protrusion of the radicle. This process is perfomed by three enzymes (α-galactosidase, endo-β-mannanase and exo-β-manosidase). The α-galactosidase is the first enzyme to cleave the polysaccharides, removing the D-galactose residues, allowing the performance of the endo-β-mannanase, which hydrolyses the mannan backbone to mannan oligosaccharides. The last part of the process includes exo-β-manoside, that cleaves the mannan oligosaccharides to mannose residues, which could be used by the embryo during growth. Aiming at understanding the function of ?-galactosidase in the process of galatomanannan degradation, we studied its mode of action on mannans and galactomannans. The α-galactosidase of Sesbania virgata (Cav.) Pers. was purified and characterized (pH and temperature optimum and the enzyme kinetics). We found that the semipurified α-galactosidase molecular weight was 42kDa at denaturating conditions, but in native conditions was 72kDa, suggesting that the enzyme has a quaternary structure. The enzyme optimum pH was between 4,4-5,4, optimum temperature between 50°C-55°C, Km= 1,8276 mM and Vmáx= 0,5024 μmolGal.min-1.mgprot-1. Mass spectrometry measures resulted the following fragments: ALADYV-HSK-RMPGSLGHEE-QDAK-TT-GDIEDNWNSMTSIADS-NDKW-ASYAGPGGWN-DPDMLEVGNG-GMTTEEYR-AP-LLVGCDIR-VAVIL-WNR, being the protein from this sequence related with storage mobilization. Possible α-galactosidase isoforms were detected during the purification, suggesting other functions for the enzyme. The α-galactosidase isoforms detected after all purification steps and with measured mass spectrometry (from 42kDa to 20kDa) should be related to the storage mobilization. We suggest that the α-galactosidase isoforms in Sesbania virgata (Cav.) Pers. seeds represents products of the enzyme self-digestion, this process being correlated with the enzyme/polysaccharide affinity and at last, correlated to the galactomannan mobilization. An extract semipurified from Sesbania virgata (Cav.) Pers. and enriched with α-galactosidase activity, was used along with endo-β-mannanase from Aspergillus niger (Megazyme®) or both endo-β-mannanase and α-galactosidase (semipurified from Sesbania virgata seeds - Chapter 1- or commercial enzyme from Cyamopsis tetragonoloba - Megazyme®) were used to study the fine structure of galactomannans. Hydrolysis of galactomannans from six species with different mannose:galactose (1:1 to 150:1) ratio were performed with endo-β-mananase from Aspergillus niger. The oligosaccharides from all hydrolysis were analyzed by HPAEC-PAD (High Performance Anion Exchange Chromatography with Pulsed Amperometric Detection). The hydrolysis fragments data (HPAEC-PAD) suggest that the side-chains of the polysaccharides can modulate the hydrolytic sites recognition on the galactomannan by the endo-β-mannanase. This conclusion is supported by: (1) the presence of limited digest oligosaccharides F1 and dimmers (F2) and trimers (F3) of the F1 oligosaccharides; (2) the presence of different F1 oligosaccharides proportions after hydrolysis with endo-β-mannanase at different concentrations, showing preference on less-branched hydrolytic sites; (3) the α-galactosidase digestion avoided the accumulation of oligosaccharides F2 and F3, showing that these oligosaccharides do not present intrinsic resistance to hydrolysis and that the reaction reaches an equilibrium even when sites of hydrolysis are still available; (4) polymers with different fine structure (ratio mannose:galactose 1:1 to 150:1) were hydrolysed at different rates by the endo-β-mannanase, showing that galactose branching interferes on the enzyme action. Considering that, the branching pattern of the polysaccharide seems to have direct influence on the interaction of the enzyme with substrate; we suggest that the structure of the galactomannan holds part of information required for its own degradation. The higher enzyme x substrate affinity, ensure the galactose branches digestion, improving the endo-β-mannanase action, ensuring the degradation of the polysaccharides to oligosaccharides. This highly regulated degradation process prevents microorganisms predation and increases the plantlet establishement

Cette thèse décrit une méthodologie innovante d’extraction et d’hémisynthèse simultanée, dénommée SECheM (Simultaneous Extraction and Chemical Modification) sur une plante mauritanienne le Cienfuegosia digitata Cav. Cette méthodologie présente plusieurs avantages : (a) elle permet d’éviter les étapes critiques au niveau de la séparation et de la purification du gossypol, un polyphénol instable isolé de la plante ciblée (b) elle permet de stabiliser le gossypol thermiquement en le transformant en base de Schiff beaucoup plus stable. (c) elle présente un avantage en termes de réduction du nombre d’étapes et de temps. La même méthodologie a été utilisée pour accéder à des analogues bases de Schiff énantiomériquement pures du gossypol seulement en 2 étapes. Ces dernières transformées efficacement en complexes métalliques énantiomériquement purs se sont montrés être intéressants d’un point de vue catalytique. / This PhD work describes an innovative methodology for simultaneous extraction and semisynthesis, named SECheM (Simultaneous Extraction and Chemical Modification) on a Mauritanian plant: Cienfuegosia digitata Cav. This methodology offers many advantages: (a) It is a perfect solution to circumvent critical steps in the extraction, separation and purification processes of gossypol that is unstable polyphenol isolated from the targeted plant (b) It allows an in-situ preparation of more stable gossypol Schiff base derivatives (c) It shows an important reduction of step number and also the time needed for the process. The same SECheM methodology was used to access enantiomerically pure Schiff base derivatives of gossypol in only two steps. The latters were efficiently transformed into enantiomerically pure metallic complexes that appear to be very interesting in a catalytic reaction.

Denna rapport är ett examensarbete på C-nivå som görs i sammarbete med teknikkonsulten Ramböll. Det vanligaste sättet att ventilera en byggnad idag är med så kallad CAV-ventilation (Constant Air Volume). Denna metod bygger på att ett luftflöde bestäms för rummet och upprätthålls med konstant flöde. En annan metod är så kallad VAV (Variable Air Volume) som bygger på att flödet varierar efter behovet. Anledningen till varför man väljer VAV istället för CAV är att med CAV finns det ofta en stor risk att man överventilerar ett rum eller byggnad, just på grund av att flödet är konstant. Problemet med VAV är att det är en högre investeringskostnad än för CAV så metoden lämpar sig bara där energibesparingen är så stor så den täcker mellanskillnaden i pris. Denna utredning visar i vilka typer av rum som det kan löna sig att installera VAV istället för det traditionella CAV-systemet. För att undersöka detta sker simuleringar av fiktiva modeller i programmet IDA Indoor Climate & Energy (IDA). IDA är ett simuleringsverktyg som används till att simulera den termiska komforten i byggnader samt byggnadens energianvändning. De olika rumstyperna som simuleras är: klassrummet, kontoret och mötesrummet. De olika fallen är utformade så att de liknar så som de ser ut i verkligheten både till geometri och nyttjandegrad. Om något av fallen visade sig vara en bra kandidat för att förse med VAV fortsätter utredningen med att fastställa hur stort bör flödet vara för att energibesparingen ska bli så stor så att det täcker investeringskostnaden. Den ekonomiska kalkyleringen sker både med en livscykelkostnadsanalys och med en enklare återbetalningstidskalkyl. Resultatet för simuleringarna visade att den enda rumstypen i denna utredning som var lönsam var mötesrummet. Klassrummet och kontoret visade sig båda ge en förlust. Detta var eftersom nyttjandegraden för dessa rum var så pass hög så att ventilationen med VAV var igång nästan lika mycket som för CAV. För mötesrummet var nyttjandegraden betydligt lägre vilket innebar att energibesparingen blev så pass hög att den täckte den höga investeringskostnaden. För mötesrummet gjordes sedan en flödesanalys som visade att rummets luftflöde bör vara dimensionerat för mellan omkring 20 – 30 personer för att vara en lönsam investering.

The most active form of Vitamin D, 1alpha,25(OH)2D3, modulates cells via receptor mediated mechanisms. While studies have elucidated the pathway via the classical nuclear Vitamin D Receptor (VDR), little is known about the membrane-associated Vitamin D Receptor (ERp60). Caveolae and its characteristic protein Caveolin-1 have been involved in many signaling pathways due to its specific structure and physical configuration. Other studies have shown that many components of the Vitamin D pathway have been found in caveolae. This study hypothesizes that caveolae and Caveolin-1 are important for the effects of 1,25 Vitamin D signaling via ERp60. Research up to date have shown that in rat and mouse growth zone chondrocytes, cells deprived of intact caveolae either through disruption through beta-Cyclodextrin or genetic knockout do not exhibit the characteristic responses to Vitamin D through ERp60 when compared to chondrocytes with functional caveolae. Studies using immunofluorescence co-localization and caveolae fractionation have shown that ERp60 is localized in the caveolae domains. Cellular fractionation was also performed to examine the localization of the ERp60 receptor in lipid rafts and caveolae. Histology and transmission electron microscopy were also used to examine the physiological importance of caveolae and Caveolin-1 in growth plate morphology and cellular characteristics.

The muscle-specific membrane protein, Caveolin-3, is a building block of caveolae a type of specialised lipid raft. Caveolin-3 is proposed to play a central role in variety of cellular functions both structural and functional, from cell signalling to cholesterol homeostasis. Caveolin-3 has also been implicated in processes involved in targeting membrane proteins to the plasma membrane, as well as mediating a host of cell signalling processes. Initial attempts were made to express full-length Caveolin-3 in E.coli. However, more success was achieved in expressing and purifying domains of Caveolin-3. To produce purified full-length Caveolin-3 the baculovirus expression system was employed and we report here that the expression of Caveolin-3 in insect (Sf9) cells leads to the formation of caveolae comparable in size to those observed in native vesicles. We subsequently purified the recombinant Caveolin-3 and determined, using multi-angle laser light scattering, that the isolated protein forms an oligomer with a molecular mass of ~200-220kDa. Using negative-stain transmission electron microscopy in conjunction with single particle analysis we have determined the first three-dimensional structure for Caveolin-3 with data converging to suggest that it forms a nonamer. The 9-fold symmetric three-dimensional Caveolin-3 volume is toroidal, ~16.5nm in diameter and 5.5nm thick, and is characterised by an outer rim of protein connected to a central 'cone-shaped' domain. Labelling studies revealed that the C-terminal domain of each of the contributing Caveolin-3 monomers associate to form the central cone density. There is also evidence to suggest that Caveolin-3 is associated with a range of proteins involved in excitation-contraction coupling. Having identified multiple potential caveolin-binding motifs within the Ryanodine Receptor, one of the key protein components of excitation-contraction coupling, we have purified the skeletal isoform of the Ryanodine Receptor (Ryanodine Receptor-1) from sheep calf muscle and using several biophysical techniques probed whether there is an interaction between Caveolin-3 and Ryanodine Receptor-1. Co-immunoprecipitation experiments indicated that the two proteins do indeed interact, but functional studies for analysis of binding characteristics were inconclusive. In conclusion, this thesis describes both the successfully purification and structural determination of Caveolin-3, generating the first 3D data for any of the caveolin proteins, as well as work aimed at understanding its functional relationship with Ryanodine Receptor-1.

<p><a></a></p><p>Emerging technologies in transportation engineering including connected and automated vehicles (CAVs) exhibit much potential to solve a variety of persistent problems that have impaired the safety and mobility performance of transportation systems. A well-known context of such problems is the construction work zone where agencies have grappled with solutions that range from no closure, partial closure to full closure of road sections during construction, rehabilitation, or maintenance work. Road agencies also seek to develop and implement such workzone plans in a manner that does not unduly jeopardize the economic, social and environmental resources of the road users and the community where the workzone is located. In order to ensure that these three components of sustainable development are attained during road construction workzone management, road agencies seek to develop and implement tools that they can use to guide road users in a network to minimize overall delay, emissions, and fuel consumption. This thesis examines this specific context of highway administration. The thesis developed detour routing guidance for the road users in a road network with work zones in case of full closure, in a manner that is consistent with sustainable development. The research did this for the Automated vehicles (this unlikely scenario is merely considered to demonstrate the potential of connectivity in the network) and the era of connected and automated vehicles. In doing this, the thesis identified the potential benefits that CAV technology can offer in sustainable systemwide management of road work zones. The thesis considered the following sustainability-related evaluation criteria: economic (accessibility to businesses, user costs of fuel consumption, and user costs of travel delay; social (rapid access by emergency services such as ambulance); and environmental (noise pollution and Greenhouse Gas (GHG) emissions). The routing optimization was modeled as a linear programming problem and numerical experiments were carried out. The road network of Sioux Falls city was used to demonstrate the study results. The results suggest that the developed optimal sustainable routing scheme yielded significant improvement in terms of the sustainability criteria while maintaining the acceptable levels of service The results also provided insights on the prospective benefits of routing schemes developed via system optimal management (achieved through centrally-guided detour movements that is facilitated by CAV technology) vis-à-vis user equilibrium management, specifically, Nash Equilibrium.<br></p>