This thesis describes a highly interdisciplinary approach to discern the differing impact of scaffold dimensionality and physical space restrictions on the behavior of single cells. Rolled-up nanotechnology is employed to fabricate three-dimensional (3D) SiO/SiO2 microtube geometries of varied diameter, that after a biofunctionalization step are shown to support the growth of U2OS and six different types of stem cells. Cell confinement quantifiable through the given microtube diameter is tolerated by U2OS cells through a remarkable elongation of the cell body and nucleus down to a certain threshold, while the integrity of the DNA is maintained. This confinement for NSPCs also leads to the approaching of the in vivo morphology, underlining the space-restrictive property of live tissue. The dimensionality of the cell culture scaffold however is identified as the major determiner of NSPC migration characteristics and leads to a morphologically distinct mesenchymal to amoeboid migration mode transition. The 3D microtube migration is characterized by exclusively filopodia protrusion formation, a higher dependence on actin polymerization and adopts aspects of in vivo-reported saltatory movement. The reported findings contribute to the determination of biomaterial scaffold design principles and advance our current understanding of how physical properties of the extracellular environment affect cell migration characteristics.

Almost all animal cells maintain a thin layer of actin filaments and associated proteins underneath the cell membrane. The actomyosin cortex is subject to internal stress patterns which result from the spatiotemporally regulated activity of non-muscle myosin II motors in the actin network. We study how these active stresses drive changes in cell shape and flows within the cortical layer, and how these cytoskeletal deformations and flows govern processes such as cell migration, cell division and organelle transport. Following a continuum mechanics approach, we develop theoretical descriptions for three different cellular processes, to obtain - in collaboration with experimental groups - a detailed and quantitative understanding of the underlying cytoskeletal mechanics. We investigate the forces and cortex flows involved in adhesion-independent cell migration in confinement. Many types of cell migration rely on the extension of protrusions at the leading edge, where the cells attach to the substrate with specific focal adhesions, and pull themselves forward, exerting stresses in the kPa range. In confined environments however, cells exhibit migration modes which are independent of specific adhesions. Combining hydrodynamic theory, microfluidics and quantitative imaging of motile, non-adherent carcinosarcoma cells, we analyze the mechanical behavior of cells during adhesion-independent migration. We find that the accumulation of active myosin motors in the rear part of these cells results in a retrograde cortical flow as well as the contraction of the cell body in the rear and expansion in the front, and we describe how both processes contribute to the translocation of the cells, depending on the geometric and mechanical parameters of the system. Importantly, we find that the involved propulsive forces are several orders of magnitude lower than during adhesive motility while the achieved migration velocities are similar. Moreover, the distribution of forces on the substrate during non-adhesive migration is fundamentally different, giving rise to a positive force dipole. In contrast to adhesive migration modes, non-adhesive cells move by exerting pushing forces at the rear, acting to expand rather than contract their substrate as they move. These differences may strongly affect hydrodynamic and/or deformational interactions between collectively migrating cells. In addition to the work outlined above, we study contractile ring formation in the actin cytoskeleton before and during cell division. While in disordered actin networks, myosin motor activity gives rise to isotropic stresses, the alignment of actin filaments in the cortex during cell division introduces a preferred direction for motor-filament interactions, resulting in anisotropies in the cortical stress. Actin filaments align in myosin-dependent shear flows, resulting in possible feedback between motor activity, cortical flows and actin organization. We investigate how the mechanical interplay of these different cortical properties gives rise to the formation of a cleavage furrow during cell division, describing the level of actin filament alignment at different points on the cortex with a nematic order parameter, in analogy to liquid crystal physics. We show that cortical anisotropies arising from shear-flow induced alignment patterns are sufficient to drive the ingression of cellular furrows, even in the absence of localized biochemical myosin up-regulation. This mechanism explains the characteristic appearance of pseudocleavage furrows in polarizing cells. Finally, we study the characteristic nuclear movements in pseudostratified epithelia during development. These tissues consist of highly proliferative, tightly packed and elongated cells, with nuclei actively travelling to the apical side of the epithelium before each cell division. We explore how cytoskeletal properties act together with the mechanics of the surrounding tissue to control the shape of single cells embedded in the epithelium, and investigate potential mechanisms underlying the observed nuclear movements. These findings form a theoretical basis for a more detailed characterization of processes in pseudostratified epithelia. Taken together, we present a continuum mechanics description of the actomyosin cell cortex, and successfully apply it to several different cell biological processes. Combining our theory with experimental work from collaborating groups, we provide new insights into different aspects of cell mechanics.

Despite spectacular progress in biophysics, molecular biology and biochemistry our ability to predict the dynamic behavior of multicellular systems under different conditions is very limited. An important reason for this is that still not enough is known about how cells change their physical and biological properties by genetic or metabolic regulation, and which of these changes affect the cell behavior. For this reason, it is difficult to predict the system behavior of multicellular systems in case the cell behavior changes, for example, as a consequence of regulation or differentiation. The rules that underlie the regulation processes have been determined on the time scale of evolution, by selection on the phenotypic level of cells or cell populations. We illustrate by detailed computer simulations in a multi-scale approach how cell behavior controlled by regulatory networks may emerge as a consequence of an evolutionary process, if either the cells, or populations of cells are subject to selection on particular features. We consider two examples, migration strategies of single cells searching a signal source, or aggregation of two or more cells within minimal multiscale models of biological evolution. Both can be found for example in the life cycle of the slime mold Dictyostelium discoideum. However, phenotypic changes that can lead to completely different modes of migration have also been observed in cells of multi-cellular organisms, for example, as a consequence of a specialization in stem cells or the de-differentiation in tumor cells. The regulatory networks are represented by Boolean networks and encoded by binary strings. The latter may be considered as encoding the genetic information (the genotype) and are subject to mutations and crossovers. The cell behavior reflects the phenotype. We find that cells adopt naturally observed migration strategies, controlled by networks that show robustness and redundancy. The model simplicity allow us to unambiguously analyze the regulatory networks and the resulting phenotypes by different measures and by knockouts of regulatory elements. We illustrate that in order to maintain a cells' phenotype in case of a knockout, the cell may have to be able to deal with contradictory information. In summary, both the cell phenotype as well as the emerged regulatory network behave as their biological counterparts observed in nature.

Gastrulation leads to the formation of the embryonic germ layers, ectoderm, mesoderm and endoderm, and is the first key morphogenetic process that occurs in development. Gastrulation provides a unique developmental assay system in which to study cellular movements and rearrangements in vivo. The different cell movements occurring during gastrulation take place in a highly coordinated spatial and temporal manner, indicating that they must be controlled by a complex interplay of morphogenetic and inductive events. Generally, cell movement constitutes a highly integrated program of different cellular behaviors including sensing, polarization, cytoskeletal reorganization, and changes in adhesion and cell shape. During migration, these different behaviors require a continuous regulation and feedback control to direct and coordinate them. In this work, we analyze the cellular and molecular mechanisms underlying the different types of cell behaviors during gastrulation in zebrafish. Specifically, we focus on the role of the adhesive and mechanical properties of germ layer progenitors in the regulation of gastrulation movements. In the first part of the project, we investigated the role of the adhesive and mechanical properties of the different germ layer progenitor cell types for germ layer separation and stratification. In the second part of this study, we applied the same methodology to determine the function of germ layer progenitor cell adhesion in collective cell migration. Tissue organization is thought to depend on the adhesive and mechanical properties of the constituent cells. However, it has been difficult to determine the precise contribution of these different properties due to the lack of tools to measure them. Here we use atomic force microscopy (AFM) to quantify the adhesive and mechanical properties of the different germ layer progenitor cell types. Applying this methodology, we demonstrate that mesoderm and endoderm progenitors are more adhesive than ectoderm cells and that E-cadherin is the main adhesion molecule regulating this differential adhesion. In contrast, ectoderm progenitors exhibit a higher actomyosin-dependent cell cortex tension than mesoderm and endoderm progenitors. Combining these data with tissue self-assembly in vitro and in vivo, we provide evidence that the combinatorial activities of cell adhesion and cell cortex tension direct germ layer separation and stratification. It has been hypothesized that the directionality of cell movement during collective migration results from a collective property. Using a single cell transplantation assay, we show that individual progenitor cells are capable of normal directed migration when moving as single cells, but require cell-cell adhesion to participate in coordinated and directed migration when moving collectively. These findings contribute to the understanding of the gastrulation process. Cell-cell adhesion is required for collective germ layer progenitor cell migration, and cell cortex tension is critical for germ layer separation and stratification. However, many questions still have to be solved. Future studies will have to explore the interaction between the adhesive and mechanical progenitor cell properties, as well as the role of these properties for cell protrusion formation, cell polarization, interaction with extracellular matrix, and their regulation by different signaling pathways.

Le mélanome uvéal constitue le cancer intraoculaire le plus fréquent chez l’adulte. Il s’agit d’un cancer très agressif puisque plus de 50% des patients développent des métastases principalement localisées au niveau du foie. Dans le but d’identifier des gènes pronostiques de développement métastatique, nous avons comparé le transcriptome de 28 tumeurs de mélanome uvéal issues de patients ayant développé des métastases dans les trois années qui ont suivi l’énucléation et 29 tumeurs issues de patients n’ayant pas développé de métastases ou ayant développé des métastases après 36 mois. Le gène PTP4A3/PRL-3 (protein tyrosine phosphatase type IV member 3/Protein of Regenerating Liver-3) a été identifié comme prédictif de l’apparition de métastases. Il code une phosphatase et sa surexpression dans des cellules de mélanome uvéal augmente leur migration in vitro et leur invasivité in vivo. Les évènements protéolytiques à la surface des cellules sont essentiels pour la migration et l’invasivité durant plusieurs processus physiologiques ou pathologiques tels que le développement de métastases. Ces évènements sont assurés par les métalloprotéases (MMPs) qui sont responsables de la dégradation et du remodelage de la matrice extracellulaire.Dans la première partie de cette thèse, nous avons observé que la métalloprotéase transmembranaire MT1-MMP est enrichie à la surface des cellules de mélanome uvéal OCM-1, des cellules MP41 issues de xénogreffes de tumeurs de mélanome uvéal humaines ou dans des tumeurs primaires de mélanome uvéal, surexprimant PTP4A3. Nous avons aussi observé que cette accumulation de MT1-MMP à la surface des cellules de mélanome uvéal est accompagnée d’une accumulation de la sécrétion de MMP2 dans le milieu extracellulaire des cellules exprimant PTP4A3. De plus, nous avons montré que PTP4A3 et MT1-MMP s’associent physiquement et que le trafic vésiculaire de MT1-MMP est accéléré dans les cellules exprimant PTP4A3 mais pas dans celles exprimant le mutant catalytique inactif PTP4A3(C104S). Enfin, nous avons démontré que l’inhibition de l’expression de MT1-MMP dans les cellules exprimant PTP4A3 diminue leur migration in vitro et leur invasivité in vivo. Pour conclure, nos résultats indiquent que PTP4A3 agit en amont de MT1-MMP à travers une accélération de son trafic vésiculaire et son accumulation à la surface des cellules afin de promouvoir la migration et l’invasivité cellulaires.Dans la deuxième partie de cette thèse, nous nous sommes intéressés au rôle de PTP4A3 pendant le développement embryonnaire. Les mélanocytes, incluant ceux de l’uvée, dérivent de la crête neurale pendant le développement embryonnaire. Nous avons alors supposé que la fonction de PTP4A3 pendant la progression métastatique pourrait refléter un rôle de la phosphatase dans la migration des cellules de crête neurale pendant le développement embryonnaire. Dans cette partie de la thèse, nous avons montré que PTP4A3 joue un rôle important dans la migration des cellules de crête neurale céphalique pendant le développement de l’embryon de Xenopus laevis. La perte de fonction de PTP4A3 provoque une réduction du territoire de la crête neurale, alors que le gain de fonction de cette phosphatase élargit les faisceaux de migration des cellules de crête neurale céphalique. De plus, des expériences d’isogreffes montrent que les explants de crête neurale dépourvus de l’expression de PTP4A3, sont incapables de migrer dans les embryons greffés. Plus encore, l’inhibition pharmacologique de PTP4A3 dans des cellules de crête neurale en culture diminue de façon significative leur vitesse de migration in vitro. Les résultats de cette étude démontrent que PTP4A3 est requise pour la migration des cellules de crête neurale céphalique in vivo pendant le développement embryonnaire de Xenopus laevis. Donc, les effets pro-migratoire et -invasif reliés à l’expression de la protéine PTP4A3 peuvent refléter son rôle durant la migration des cellules de crête neurale. / Uveal melanoma (UM) is the most common intraocular malignancy in adults and is an aggressive tumor since about 50% of patients will develop metastases mostly in the liver. In order to identify metastasis prognostic genes, we compared 28 uveal melanoma tumors from patients who developed metastases within three years after enucleation to 29 tumors from patients who did not develop metastases or who developed metastases after 36 months. The PTP4A3/PRL-3 gene (protein tyrosine phosphatase type IV member of Regenerating Liver 3/Protein-3) was identified as a strong predictor of metastasis occurence. PTP4A3 encodes a dual specificity phosphatase and its expression in UM cells increases their in vitro migration and in vivo invasiveness. Proteolytic events at the cell surface are essential for cell migration and invasiveness during many physiological and pathological processes such as tumor metastasis. MMPs are responsible for the degradation and turnover of the extracellular matrix (ECM). In the first part of this thesis, We found that the membrane anchored MT1-MMP is enriched at the cell surface of OCM-1, xenograft MP41 or primary human uveal melanoma tumors expressing PTP4A3. We also found that membrane accumulation of MT1-MMP in presence of PTP4A3 in OCM-1 cells is accompanied by enhanced secretion of MMP2 in the extracellular medium. Moreover, we demonstrated that PTP4A3 and MT1-MMP physically associate and that the vesicular trafficking of MT1-MMP is accelerated in presence of active PTP4A3 but not in presence of the mutant PTP4A3(C104S). Furthermore, we found that inhibition of MT1-MMP expression in PTP4A3 expressing uveal melanoma cells impairs their migration in vitro and invasiveness in vivo. Collectively, our results indicate that PTP4A3 acts upstream of MT1-MMP through acceleration of its vesicular trafficking and accumulation at the cell surface to enhance cell migration and invasiveness of uveal melanoma cells. In the second part of this thesis, we investigated the role of PTP4A3 during embryonic development. Melanocytes, including uveal melanocytes, are derived from the neural crest during embryonic development. We therefore suggested that PTP4A3 function in uveal melanoma metastasis may be related to an embryonic role during neural crest cell migration. We show that PTP4A3 plays a role in cephalic neural crest development in Xenopus laevis. PTP4A3 loss of function resulted in a reduction of neural crest territory, whilst gain of function experiments increased neural crest territory. Isochronic graft experiments demonstrated that PTP4A3-depleted neural crest explants are unable to migrate in host embryos. Pharmacological inhibition of PTP4A3 on dissected neural crest cells significantly reduced their migration velocity in vitro. Our results demonstrate that PTP4A3 is required for cephalic neural crest migration in vivo during embryonic development.Therefore, the pro-invasive and migratory effects related to the expression of PTP4A3 protein may reflect its role during neural crest migration. Thus, understanding the mechanism of action of PTP4A3 during NC migration may provide insight into PTP4A3 related migratory and invasive phenotypes in human uveal melanoma pathology.

The invasion of cancer cells is an important aspect of cancer progression. Single tumor cells exhibit at least two types of invasion in 3D environment, mesenchymal and amoeboid invasion. Tumor cells can switch between these two modes of movement depending on cellular status and surrounding environment. Amoeboid-mesenchymal transition (AMT) is less explored then mesenchymal-amoeboid transition (MAT). We performed a proteomic analysis of amoeboid-mesenchymal transition of human melanoma cell line A375M2. We have induced amoeboid-mesenchymal transition by treatment with a ROCK inhibitor Y27632 in 3D matrigel matrices and in 2D environment. Induction of the amoeboid-mesenchymal transition has changed a level of expression of 92 proteins and a level of phosphorylation of 15 proteins. Expression of only 17 proteins and phosphorylation of 8 proteins was identically changed in both of these environments. We found that PKCα regulates amoeboid migration and that treatment of cells with a PKCα inhibitor Gö6976 induces amoeboid-mesenchymal transition. Analysis of the proteomics data have further shown that induction of AMT by the ROCK inhibitor Y27632 leads to activation of antiapoptotic signals and activation of signaling pathways involved in regulation of actin cytoskeleton especially regulation of focal...

La morphogenèse cellulaire représente l’ensemble des évènements qui dictent la forme et la structure d’une cellule. Ces changements morphologiques sont importants pour de nombreux mécanismes vitaux, comme le développement embryonnaire, la réaction inflammatoire ou encore la cicatrisation. Pour cela, la morphogénèse cellulaire dépend principalement du remodelage du cytosquelette cellulaire qui, une fois associé à la membrane plasmique, forme l’armature de la cellule. L’ezrine, la radixine et la moésine appartiennent à la famille de protéines ERM et lient la membrane plasmique au cytosquelette d’actine et aux microtubules. De ce fait, les protéines ERM sont impliquées dans différents processus fondamentaux nécessitant un remodelage du cortex cellulaire tels que la mitose et la migration. Dans un contexte pathologique, la surexpression et/ou la sur-activation des protéines ERM corrèlent avec un haut potentiel métastatique et un pauvre pronostic chez les patients. Une meilleure compréhension de la régulation de ces trois protéines pourrait ainsi aider au développement de nouvelles solutions thérapeutiques. L’objectif de mon doctorat portait sur l’identification et la caractérisation de nouvelles voies de signalisation régulant les protéines ERM. Dans un premier temps (i), j’ai participé au développement et la caractérisation de sondes BRET2 permettant de suivre l’activité de chaque protéine ERM en temps réel. Ces sondes BRET2 sont d’ailleurs compatibles avec des études à grande échelle ce qui nous permettra de réaliser des cribles génomiques et chimiques dans le but d’identifier, respectivement, de nouveaux régulateurs et inhibiteurs pharmacologiques des protéines ERM. Ensuite (ii), grâce aux sondes BRET2, nous avons identifié les microtubules en tant que nouveaux régulateurs négatifs des protéines ERM. Nous avons alors montré que la dépolymérisation des microtubules d’interphase à l’entrée en mitose participe à l’activation des protéines ERM et à l’arrondissement cellulaire. Enfin (iii), nous avons montré que le récepteur couplé aux protéines G TPα régule l’activité des protéines ERM dans des cellules de cancer du sein triple négatif. Cette régulation est d’ailleurs importante pour la motilité de ces cellules. Pour conclure, en plus d’avoir développé de nouveaux outils utiles pour des études à grande échelle, mon travail de doctorat a permis de mettre en lumière deux nouvelles voies de signalisation régulant les protéines ERM au cours de la mitose et la migration cellulaire. Sans compter l’apport de nouvelles informations sur un aspect fondamental, mon travail a apporté de nouvelles pistes de réflexion quant aux rôles des protéines ERM dans le développement des métastases. / Cell morphogenesis represents the set of events that dictate the shape and structure of a cell. These morphological changes are important for many vital mechanisms such as embryonic development, inflammatory response, or wound healing. Cell morphogenesis depends mainly on the remodeling of the cell cytoskeleton which forms the framework of the cell when associated with the plasma membrane. Ezrin, radixin and moesin belong to the ERM family and crosslink the plasma membrane to the actin cytoskeleton and microtubules. Therefore, ERMs are involved in various fundamental processes requiring remodeling of the cell cortex such as mitosis and migration. In a pathological context, overexpression and/or overactivation of ERMs correlate with high metastatic potential and poor prognosis in patients. Thus, a better understanding of the regulation of these three proteins could help in the development of new therapeutic solutions. The aim of my PhD work was to identify and characterize novel signaling pathways regulating ERMs. In a first step (i), I participated in the development and characterization of BRET2 biosensors allowing to follow the activity of each ERM protein in real time. These BRET2 biosensors are compatible with large-scale studies which will allow us to perform genomic and chemical screens to identify, respectively, new upstream regulators and pharmacological inhibitors of ERMs. Secondly (ii), based on BRET2-chemical screen, we identified microtubules as new negative regulators of ERMs. We then showed that depolymerization of interphase microtubules at mitosis entry triggers ERM activation and cell rounding. Finally (iii), we showed that the G protein-coupled receptor TPα regulates the activity of ERMs in triple negative breast cancer cells. This regulation is important for the motility of these cells. To conclude, in addition to having developed new tools useful for large-scale studies, my PhD work has uncovered two new signaling pathways regulating ERMs during mitosis and cell motility. In addition to providing new information on a fundamental aspect, my work has provided new insights into the roles of ERMs in the development of metastasis.

Le trafic vésiculaire joue un rôle crucial dans la sécrétion et l'internalisation des composantes extracellulaires ou membranaires. De plus, il contrôle la distribution spatio-temporelle de nombreuses protéines. En outre, ce processus peut contrôler la livraison de protéines à divers domaines des membranes plasmiques. Mes travaux de recherche se sont centrés sur l'étude des protéines Rab11-Family of Interacting Proteins de classe I (Rab11FIPs), plus précisément de Rab11FIP1 et de sa fonction dans différents processus cellulaires nécessitant le trafic vésiculaire, tels que la mitose, la cytokinèse, l'établissement de la polarité cellulaire et de la migration cellulaire, individuelle ou collective. En effet, ces processus nécessitent un contrôle vésiculaire finement régulé, par exemple, la mitose/cytokinèse nécessite le recrutement de différents complexes protéiques contenant des cargaisons liées aux vésicules. L'établissement de la polarité cellulaire nécessite le tri et la livraison de complexes protéiques à des membranes spécifiques et la migration cellulaire nécessite une polarisation complète de la cellule pour permettre un mouvement directionnel. Mes travaux ont élucidé une voie impliquant Rab11FIP1 et Rab35 dans le contrôle à la fois de la cytokinèse et de l'établissement de la polarité. En effet, alors que d'autres groupes ont publié que Rab35 est essentiel pour l'élimination de l'actine située au pont intercellulaire via le recrutement de MICAL1 et OCRL, j'ai montré que Rab11FIP1 est critique pour maintenir Rab35 dans cette région. De plus, j'ai montré que l'absence de Rab11FIP1 et la mauvaise localisation subséquente de Rab35 peuvent conduire à des phénotypes similaires à ceux observés lors de la dérégulation de l'abscission, tels que la binucléation et le retard de la cytokinèse, qui sont des défauts qui contribuent au développement de cancers. Ces défauts peuvent cependant être rétablies en utilisant de faibles doses de Latrunculin A pour dépolymériser de l'actine. De plus, j'ai montré que Rab11FIP1 et Rab35 semblent avoir des fonctions dans la polarité apico-basale des cellules Caco-2 et MCF-10a. Enfin, j'ai aussi montré que Rab35 est impliquée dans la régulation de la migration collective. En conclusion, mes données établissent Rab11FIP1 et Rab35 comme des régulateurs importants de divers processus cellulaires. Ces résultats constituent un point de départ important pour une étude plus approfondie de l'abscission, de l'établissement de la polarité cellulaire, de la formation du Apical Membrane Initiation Site (AMIS) et de la migration cellulaire collective. Cela aura des implications de grande envergure, car ces cascades de signalisation peuvent avoir un impact sur pratiquement tous les processus cellulaires. / Vesicular trafficking plays a crucial role in the secretion and internalization of extracellular or plasma membrane components. Moreover, it controls the spatiotemporal distribution of many proteins during different processes. Also, it can control the delivery of proteins to various domains of the plasma membranes. With this in mind, my research focused on the Rab11 Family of Interacting Proteins of Class I (Rab11FIPs), more specifically of Rab11FIP1 and its function in different cellular processes that require vesicular trafficking, those being mitosis, cytokinesis, establishment of cell polarity and cellular migration, both single and collective. Indeed, these processes require exquisite vesicular control, for example, mitosis/cytokinesis require the recruitment of different protein complexes containing vesicle-bound cargoes. Cell polarity establishment requires the sorting and delivery of protein complexes and cell migration requires fine-tuned polarization of the entire cell to allow for directional movement. My work has elucidated one such pathway involving Rab11FIP1 and Rab35 in the control of both cytokinesis and the establishment of polarity. Indeed, while others have shown that Rab35 is critical for the removal of actin in the intercellular bridge via recruitment of its cargoes MICAL1 and OCRL, I showed that Rab11FIP1 is vital for maintaining Rab35 in the midbody. In fact, I showed that lack of Rab11FIP1 and subsequent mislocalization of Rab35 can lead to similar phenotypes observed during dysregulated abscission, such as binucleation and cytokinesis delay, which are hallmarks of cancer. These phenotypes however, can be rescued using low doses of an actin depolymerizing drug called Latrunculin A. Furthermore, I showed that both Rab11FIP1 and Rab35 seem to have functions in the establishment of apico-basal polarity of both Caco-2 and MCF-10a. Finally, I showed that Rab35 seems to regulate the collectiveness of migrating cells. Altogether, these data establish Rab11FIP1 and Rab35 as important regulators of various cellular processes. These results will be an important stepping stone for further studies into abscission, establishment of cellular polarity, Apical Membrane Initiation Site (AMIS) formation, and collective cell migration. This will have far reaching implications, as these signaling cascades can impact virtually all cellular processes.

Collective cell migration is a defining feature of many morphogenetic processes. Diseases such as congenital heart diseases and cancer arise due to mis-regulation of collective migratory behaviour and animal models have played a pivotal role in dissecting the molecular mechanisms which underlie this process. During embryonic heart development, cardiac precursors undergo a stage of collective migration in both vertebrates and invertebrates. We developed a paradigm to quantitatively assess collective cell migration of cardiac precursors in live embryos of Drosophila, which is the simplest genetic model organism with a heart. Therefore, we studied processes which are commonly observed in most collective cell migration models such as guidance signalling and extracellular matrix remodelling. Our results demonstrate that leading edge of migrating cardioblasts is highly active and that this behaviour is regulated by guidance cues, Slit and Netrin and their respective receptors Robo/Robo2 and Frazzled/Uncoordinated5. These molecules cooperatively promote leading edge motility and epithelial characteristics of the cardioblasts. Next, we determined that matrix restructuring around the cardioblasts requires proteases Mmp1 and Mmp2, which are members of the highly conserved Matrix Metalloproteinase family. We demonstrate that Mmp1 and Mmp2 have distinct roles during lumen formation, however, both Mmp1 and Mmp2 are required for collective motility of the cardioblast leading edge. Hence, we propose that embryonic heart development in Drosophila is an effective and amenable model of collective cell migration which can be applied to discover unique mechanisms which coordinate cell movement in groups. / Thesis / Doctor of Philosophy (PhD)

Breast cancer metastasis is one of the reasons why this type of cancer is destructive even after treatment as it tends to move from one organ to another increasing the risk factor for an individual. In the metastatic cascade, the tumour undergoes many different types of stress, including extracellular (ECM) stiffness. Key proteins that have been linked to the change in stiffness of the ECM are YAP and β-catenin. Both functions similarly in the manner that they need to translocate to the nucleus and bind to their respective transcription factors in order to activate their downstream genes. In parallel this seems to be on a stiffness dependent manner. Therefore, the hypothesis is that β-catenin is able to compensate for YAP function when YAP is downregulated in a stiffness dependent manner. In this work, results show a significant increase of YAP and β-catenin translocation to the nucleus of MDA-MB-231 cells when they are subject to the stiffer substrate in comparison to the softer substrate indicating increase gene expression of their respective pathways. The effect of the stiffness was then analyzed by doing single knockdown experiments with siRNA. To investigate the response of β-catenin, knocking down YAP was done, and it was shown that β-catenin translocation significantly increased on the softer matrix, while stiffer matrix showed no significant difference. Downstream gene expression also confirmed this idea with CTGF being downregulated with β-catenin knockdown and AXIN2 being downregulated with YAP knockdown. In the cell behavioural aspect, only when the double knockdown of YAP and β-catenin was done, the migration and proliferation rate had significant lowered. This echoes the idea further of the compensating effects of β-catenin to YAP. In addition, the exploration of the cytoskeleton network was investigated, as this is a key component in protein pathways, by treating the cells using LatA and Blebbistatin, affecting F-actin and myosin-II respectively. Knowing the critical role of cytoskeletal proteins in mechanotransduction, the hypothesis is that actin filaments and myosin-II mediate the YAP & β-catenin nuclear translocation activation. Findings show the direct relationship between F-actin and YAP as actin polymerization state significantly decreased when YAP was knockdown in a similar manner to when LatA was added. When myosin-II was added, both YAP and β-catenin nuclear translocation were affected, indicating its potential role in mechanotransduction. Furthermore, it was found that cell confluency and PIEZO1 activation had significant effects in YAP & β-catenin translocation. By seeding the cells with different densities, the β-catenin signalling could be visualized with IF staining, with the conclusion that at high confluency, the β-catenin translocation was alleviated. For the PIEZO1 studies, results indicate that PIEZO1 is an upstream regulator of YAP by doing single knockdown experiments and subsequently analysing YAP signalling. The findings underscore the potential significance of β-catenin as a modulator of mechanotransduction in the absence of YAP, showcasing the complexity of the protein signalling network orchestrating cellular response due to mechanical cues. Unravelling these protein interplay could offer novel insights into therapeutic targets for breast cancer mechanotransduction. Ultimately, this research adds to the understanding of the intricate protein signalling that governs mechanotransduction in breast cancer cells. The discovery of stiffness dependent YAP & β-catenin signalling, the interplay between YAP and β-catenin pathway mechanotransduction implicated by cell density, the regulation of YAP- β-catenin interplay in mechanotransduction by PIEZO1, the importance of F-actin & myosin-II in YAP & β-catenin translocation, and the YAP & β-catenin effects on cell behaviour, all help lay the groundwork for devising targeted interventions to impede cancer progression. / Thesis / Master of Applied Science (MASc) / Breast cancer is the most prominent type of cancer that exists in women and like other cancers, it can spread to other organs such as the bone, liver, and brain even though the microenvironments are different. With different proteins like yes-associated protein (YAP) regulating this microenvironmental change in the primary and secondary sites, it can flourish and become more aggressive which leads to death for the host. The interactions of these proteins and their pathways which affects the aggressiveness of the cancers are still not well understood. This project investigates the interaction between YAP and β-catenin in response to surface stiffness to understand the mechanical regulation of breast cancer metastasis. Alongside the protein signalling, cytoskeletal components, downstream gene expression, cell confluency, and membrane proteins are explored. Our results show that an increase in stiffness allow for higher nuclear translocation for YAP and β-catenin, enhancing downstream gene expression relating to migration and proliferation. Furthermore, in lower stiffness the crosstalk between YAP and β-catenin results in an inverse relationship. These findings suggest β-catenin compensates YAP function when YAP is inhibited. In terms of the cytoskeletal protein, an integral part of the cell, the intervention saw a significant alteration in the YAP & β-catenin signalling. Additionally, cell confluency played a large role in β-catenin nuclear translocation implicating the role of cell-to-cell contact in mechanotransduction. To see if mechanosensitive membrane proteins fit into the pathway, PIEZO1 studies were done and results show that it is an upstream effector of YAP, and consequently an indirect connection with β-catenin. All in all, this thesis provides insightful information in the role of stiffness matrix, cell confluency, membrane proteins and how that regulate YAP & β-catenin. This research provides the mechanism for the synergistic therapies targeting multiple proteins to prevent cancer growth and metastasis.