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Thesis (M. Sc. (Microbiology)) -- University of Limpopo, 2016 / Smart hydrogels could facilitate immobilisation of cellulases to allow recovery and decrease enzyme cost in the biofuel industry, as they have a soluble-gel transition. The aim of the study was to design and evaluate the use of smart hydrogels for immobilisation of cellulase system that can be recovered after hydrolysis of cellulosic biomass. Cellulases from Aspergillus niger FGSC A733 produced under solid state fermentation and commercial cellulases were used in immobilisation. Various support matrices prepared were poly-N-isopropylacrylamide (p-NIPAAm), poly-N isopropylacrylamide-co-Methacrylic acid (p-NIPAAm-co-MAA) and supermacroporous poly-crosslinked-Acrylamide-co-N,N’-Methylenebisacrylamide (p-crosslinked-AA-co MBA). Cellulases were coupled onto the support matrices by covalent attachment method through reactive groups of N-acryloxysuccinimide (NAS) or Methacrylic acid N-hydroxysuccinimide (NMS). The low critical solution temperature (LCST) of formed p-NIPAAm-co-MAA copolymer was determined by the inflection point method. The shrinking and swelling kinetics and pH sensitivity of p-NIPAAm-co-MAA copolymer and conjugates were characterised using a cloud point method. Hydrolysis of CMC using cellulase-microbeads-p-NIPAAm and cellulase-crosslinked-p-NIPAAm with different percentage gel showed activity trend of 0.05>1>10>5>0.1% and 5>2>10% respectively. HPLC analysis showed that supplementation of β-glucosidase in cellulase-crosslinked-p-NIPAAm conjugates increased glucose by 12 and 14-fold at 30 and 50 °C respectively in the avicel hydrolysate in comparison with no β glucosidase supplementation. In the hydrolysis of avicel using cellulase-crosslinked p-NIPAAm-co-MAA conjugate a total of 13.6 g/L of reducing sugar was liberated after three cycles. In comparison a total of 21.4 g/L of reducing sugars were released from avicel hydrolysis using cellulase-crosslinked-p-AA-co-MBA conjugate after 3 cycles. In contrast, reducing sugars released in thatch grass hydrolysis using free enzyme were 8 times greater than in cellulase-crosslinked-p-AA-co-MBA conjugate. Cellulase crosslinked-p-NIPAAm-co-MAA conjugates were more stable than free enzyme at 50 and 60 °C after 24 hour and 120 minutes of incubation respectively, but lost activities at 65 °C after 120 minute. Therefore the activity loss in the immobilised enzymes was more due to thermal inactivation during precipitation and recovery than incomplete recovery during precipitation cycles. The results show that cellulases immobilised on smart polymers with sol-gel transition could be used in hydrolysis of cellulose due to ease of recovery. Hydrolysis kinetics was efficient for both immobilised enzyme system (cellulase-crosslinked-p-AA-co-MBA and cellulase-crosslinked-p-NIPAAm-co MAA conjugate) since were re-used in hydrolysis of avicel. Therefore the use of these smart polymers for cellulase immobilisation can contribute in cost reduction of the enzymatic hydrolysis process in the biofuel industry. / National Research Foundation (NRF) , University of Limpopo financial aid office and Flemish Interuniversity Council (VLIR-UOS) fo

Hydrogen production from abundant renewable biomass would decrease reliance on crude oils, achieve nearly zero net greenhouse gas emissions, create more jobs, and enhance national energy security. Cell-free synthetic pathway biotransformation (SyPaB) is the implementation of complicated chemical reaction by the in vitro assembly of numerous enzymes and coenzymes. Two of the biggest challenges for its commercialization are: effective release of fermentable sugars from pretreated biomass, and preparations of thermostable enzymes with low-cost. The hydrolysis performance of 21 reconstituted bacterial cellulase mixtures containing the glycoside hydrolase family 5 Bacillus subtilis endoglucanase, family 9 Clostridium phytofermentans processive endoglucanase, and family 48 Clostridium phytofermentans cellobiohydrolase was investigated on microcrystalline cellulose (Avicel) and regenerated amorphous cellulose (RAC). The optimal ratios for maximum cellulose digestibility were dynamic for Avicel but nearly fixed for RAC. Processive endoglucanase CpCel9 was most important for high cellulose digestibility regardless of substrate type. These results suggested that the hydrolysis performance of reconstituted cellulase cocktail strongly depended on experimental conditions. Thermobifida fusca YX was hypothesized to have a thermophilic polyphosphate glucokinase. T. fusca YX ORF Tfu_1811 encoding a putative PPGK was cloned and the recombinant protein fused with a family 3 cellulose-binding module (CBM-PPGK) was over expressed in Escherichia coli. By a simple one-step immobilization, the half-life time increased to 2 h, at 50 °C. These results suggest that this enzyme was the most thermostable PPGK reported. My studies would provide important information for the on-going project: high-yield hydrogen production from cellulose by cell-free synthetic enzymatic pathway. / Master of Science

Dans le contexte énergétique et climatique mondial, le coût élevé des enzymes Cellulolytiques (cellulases) freine le développement des bioraffineries lignocellulosiques, pour produire des biocarburants et composés chimiques à partir d'une matière première végétale renouvelable. L'objectif de ce travail est de caractériser et de modéliser le métabolisme du micro-organisme Trichoderma reesei, afin d'optimiser le protocole industriel de production de cellulases. Cette étude a été réalisée sur des milieux modèles représentatifs de ceux attendus à l'échelle industrielle. Tout d'abord, la stoechiométrie des réactions de croissance et de production a été établie, puis une étude cinétique a été menée pour mesurer précisément le comportement du micro-organisme à forte induction de la production de cellulases. Le modèle résultant a été utilisé pour optimiser le protocole industriel de production. Ensuite, l'intégration de cette étape dans une bioraffinerie lignocellulosique a été étudiée, avec l'effet sur le métabolisme i) des mélanges de sucres disponibles, ii) des composés inhibiteurs issus de la dégradation de la lignocellulose, et iii) du changement d'échelle. Ces travaux ont fait progresser de façon substantielle les connaissances du métabolisme de T. reesei en ce qui concerne la production de cellulases, et les modèles développés sont des outils d'aide rationnelle à la définition d'un procédé de production de cellulases intégré dans une bioraffinerie lignocellulosique. / In the global energetic and climatic context, the high cost of the cellulolytic enzymes (cellulases) postpones the development of lignocellulosic biorefineries, dedicated to produce biofuels and chemical compounds from renewable vegetable feedstocks. The aim of this work was to measure and model the metabolism of the micro-organism Trichoderma reesei, in order to optimize the industrial protocol for the production of cellulase. This study was carried out using synthetic media representative of industrial ones. First, the stoichiometries of growth and protein production reactions were determined. Then, a kinetic study was conducted to precisely measure the specific rates of T. reesei at high induction of cellulase production. The resulting model was used to optimize the industrial production protocol. Finally the integration of this step in a lignocellulosic biorefinery was studied by determining the impacts on the metabolism of i) available sugar mixtures, ii) inhibitory compounds from lignocellulosic biomass degradation, and iii) scale-up. These results significantly contributed to improve the knowledge of T. reesei metabolism on cellulase production. The developed models are rational tools for the optimization of a cellulase production protocol suited to lignocellulosic biorefineries.

In den Pflanzenzellwänden befindliche Polysaccharide stehen dem Prozess nur bedingt als Energiequelle zur Verfügung, da diese in einem Komplex mit Lignin verknüpft sind. Um diese Substanzen für den Biogasprozess verfügbar zu machen und demnach den Substratumsatz bzw. die Prozesseffizienz zu erhöhen, sind geeignete Stoffe oder Techniken einzusetzen bzw. zu entwickeln. In dieser Arbeit wurde zielführend der Einsatz von unterschiedlichen Enzympräparaten in drei verschiedenen Prozessstufen bei ausgewählten Energiepflanzen mit variierender Häcksellänge untersucht. Anhand von Enzymaktivitätsbestimmungen konnten Enzympräparate für die einzelnen Stufen selektiert werden. Die ausgewählten Enzyme wurden einzeln oder in Mischung während der Silierung, direkt vor dem Biogasprozess sowie während des Biogasprozesses zum Substrat dotiert und dieses nach der jeweiligen Vorbehandlung in Batch-Gärtests vergoren. Neben der Biogas- und Methanausbeute wurde zur Bewertung der Enzymleistung der Abbau an Lignocellulose sowie die Freisetzung an niedermolekularen Kohlenhydraten ermittelt. Zusätzlich wurde das Quellen der Lignocellulose mit Hilfe eines Wasserzusatzes in Form einer Vorhydrolyse als Vorbehandlungsmethode mit allgemein positivem Ergebnis geprüft. Das Ziel der verbesserten Substratumsetzung bei Mais und Roggen und folglich einer Erhöhung der Biogasproduktion wurde durch den Zusatz ausgewählter Enzympräparate erreicht. Es konnten Grundlagen bezüglich der Wirkung von Enzymen in Biogasprozessen geschaffen werden, anhand derer deutlich wurde, dass besonders die enzymatische Behandlung in den der Methanisierung vorgelagerten Prozessstufen weiterzuentwickeln ist. / Polysaccharides of plant cell walls are of limited digestibility due to their cross-linking to lignin. In order to make the molecules available for the biogas process and thus increase the substrate utilization and process efficiency appropriate substances or techniques are needed. It was therefore the aim of this work to investigate the effects of different enzyme preparations in three digestion process stages. Selected energy plants with varying degrees of particle sizes (chopping lengths) were used as digester feedstock. Enzyme preparations for the different process stages were chosen by enzyme assays. The selected enzymes were added to the feedstock during the ensiling, directly before the biogas process or during the biogas process separate or in mixtures. Pre-treated substrates were subsequently digested in batch fermentation tests. Beside the biogas and methane yield the degradation degree of lignocellulose and the release of low molecular carbohydrates were investigated for evaluating the enzyme performance. Additionally, the swelling of lignocellulose caused by addition of water in a pre-hydrolysis process was examined as a method of pre-treatment, with generally positive results. The aim of an improved substrate conversion of maize and rye and thus an enhanced biogas production by enzymatic pretreatments was achieved. Scientific fundamentals regarding the impact of enzymes on biogas processes were established. Enzymatic pretreatments in process steps before methanation showed potential for further developments.

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A hidrólise enzimática de celulose representa, em relação à hidrólise ácida, uma alternativa limpa para produção de etanol. No entanto, existem duas dificuldades: o alto custo das enzimas e recalcitrância das regiões cristalinas da celulose. Para o primeiro problema, propomos a imobilização de celulase, um complexo enzimático que sinergicamente promove a degradação da celulose em glicose e celobiose, sobre wafers de silício. Apesar da atividade enzimática de celulase adsorvida ser em geral menor que a de celulase livre, a imobilização de celulases provou ser vantajosa, pois permite até seis reusos, mantendo um nível de atividade apenas 20% inferior ao original. Quanto à questão da recalcitrância das regiões cristalinas da celulose, utilizamos diferentes pré-tratamentos de celulose, a fim de reduzir a sua cristalinidade e o seu grau de polimerização, além de também modificar a estrutura supramolecular da celulose e a quantidade de poros que esta apresenta, avaliando todos estes parâmetros quantitativamente frente à atividade enzimática livre e imobilizada. A sacarificação enzimática de celulase livre e imobilizada foi determinada na hidrólise de celulose microcristalina (Avicel), e dois tipos de celulose nativa, algodão e eucalipto. Avicel foi pré-tratada a partir da (i) dissolução e degradação em ácido fosfórico, (ii) dissolução em acetato de 1-etil-3-metil-imidazólio (EMIMAc), e (iii) da hidrólise por endoglucanases adsorvidas, uma enzima do complexo enzimático celulase. Celulose de eucalipto e algodão foram mercerizadas a fim de se retirar contaminantes. A hidrólise com celulase livre levou a taxas de conversão de celulose à glicose que não apresentaram correlação com o índice de cristalinidade, nem com o grau de polimerização, mas apresentaram correlação direta com a capacidade de absorção de água, também chamada de constante de capilaridade. As taxas de conversão obtidas na presença de celulase adsorvida apresentaram correlação inversa com a constante de capilaridade, evidenciando que o mecanismo de hidrólise neste caso é fortemente dependente da camada de hidratação da celulose. / Enzymatic hydrolysis of cellulose represents, in relation to acid hydrolysis, a clean alternative for production of ethanol. However, there are two difficulties: the high cost of enzymes and the recalcitrance of the crystalline regions of cellulose. For the first problem, we propose the immobilization of cellulase, an enzymatic complex which synergistically promotes the degradation of cellulose to glucose and cellobiose, onto Si wafers. Although the enzymatic activity of immobilized cellulase is generally lower than that of free cellulase, immobilization has proven to be advantageous since it allows up to six reuses maintaining the activity level at 80% of the original one. Concerning the recalcitrance of the crystalline regions of cellulose, we used different cellulose pretreatments in order to reduce its crystallinity and degree of polymerization, and to modify the cellulose supramolecular structure along with the amount of pores. All these parameters were quantitatively correlated with the activity of free and immobilized cellulase. The enzymatic activity of free and immobilized enzyme was determined by the hydrolysis of microcrystalline cellulose (Avicel), and two types of native cellulose, cotton and eucalyptus. Avicel was pretreated in three different ways: (i) dissolution and degradation in phosphoric acid, (ii) dissolution in 1-ethyl-3-methyl-imidazolium acetate (EMIMAc), and (iii) hydrolysis by immobilized endoglucanase, an enzyme that is part of the cellulase enzyme complex. Eucalyptus and cotton pulp were mercerized in order to remove contaminants. Hydrolysis with free cellulase yielded cellulose to glucose conversions that were neither correlated with the crystallinity index nor with the degree of polymerization, but were directly correlated with the cellulose ability to absorb water (capillary constant). The conversion rates obtained in the presence of immobilized cellulase correlated inversely with the capillary constant values, indicating that hydrolysis mechanism in this case is strongly dependent on the hydration layer of cellulose

An investigation was made into the isolation and screening of highly cellulolytic anaerobic fungi and their production of cellulolytic enzymes using immobilised rhizomycelia. A total of 46 anaerobic fungi were isolated on cellulosic substrates from ruminant and non-ruminant herbivores. Primary screening of these isolates was performed using dye release from cellulose-azure which qualitatively detected cellulolytic activity. Twelve isolates were chosen on the basis of their maximum solubilisation rates of the labelled cellulose and then subjected to secondary screening which involved the quantification of enzyme activity. The enzyme mixtures were characterised by carboxymethylcellulase, xylanase, B-glucosidase, B-xylosidase and cellobiase assays, measured by the production of either reducing sugars, p-nitrophenol or glucose. All strains produced a number of enzymes that allowed them to hydrolyse straw and highest enzyme activity was measured in static cultures grown on 0.5% straw. A monocentric isolate, Piromyces strain KSX1 from a red kangaroo, and a cattle polycentric isolate, Orpinomyces strain 478P1, were selected for study of cellulolytic enzyme production on the basis of high fibre digestion capability and amenability toward encapsulation. The immobilised polycentric strain proved to be operationally superior to strain KSX1 as strain 478P1 did not produce any viable growth in the culture liquor. Studies into single batch cultures of free cells of strains KSX1 and 478P1 revealed that the maximum specific rate of B-glucosidase production occurred concomitantly with maximum specific growth rate suggesting that the immobilised fungus must grow for continuous enzyme production to occur. Although the physiology of cellulase synthesis in strains KSX1 and 478P1 was found to be growth-associated, immobilisation of the fungus offered the advantage of the repeat-batch use of cells with the accumulation of extracellular enzymes after each batch. Thus, operational gains were the key issues in assessing the potential application of immobilised anaerobic fungi in the production of cellulolytic enzymes. The repeat-batch system was operationally more efficient than the free cell batch cultures because immobilisation removed the need of reculturing the cells for every single batch. / Doctor of Philosophy (PhD)