<div>Biodiversity loss is the silent crisis of the 21st century. Human activities are drastically altering the diversity of life on Earth, yet the extent of this transformation is shrouded by our limited information on biodiversity and how it is changing. Emerging technologies may be suited to fill this information gap, and as a result increase our capacity to measure and manage natural systems. Acoustic monitoring is a remote sensing technique that is rapidly reshaping the temporal and spatial scales with which we can assess animal biodiversity. Through recording and analyzing soundscapes—the collection of sounds occurring at a given place and time—we can assess biodiversity, habitat condition, and environmental change. However, the relationships between soundscapes and these three ecological dimensions are still in the early phases of categorization, especially in aquatic systems. </div><div><br></div><div>This dissertation investigates how soundscapes can be used to measure biodiversity, habitat condition, and environmental change in aquatic habitats. It addresses several knowledge gaps: First, I develop a framework for classifying unknown sounds within a soundscape, which I use to measure the acoustic diversity and dynamics within a tropical freshwater wetland. Second, I demonstrate that soundscapes can reflect the resilience of animal communities following disturbance events. Altered soundscapes revealed that Hurricane Maria, which swept through Puerto Rico in September 2017, impacted dry forest animal communities more than adjacent coral reef communities. Third, in kelp forest habitats off the coast of California, USA, I showed that soundscape variables correlated with ecological variables associated with regime shift in kelp forests, including urchin density, kelp cover, and fish diversity. Overall, this dissertation demonstrates that soundscape recording and analysis is a promising way to assess the ecological conditions of aquatic systems. </div>

<p>  </p> <p>The rise of technology as a data source for ecological research and biodiversity conservation has led to a host of new opportunities, and new challenges, for researchers, conservationists, policymakers, and land managers. As these technologies have become more common and more capable, researchers need improved methods and improved theoretical frameworks to integrate these technologies with each other; with social science and policy; and with land-use planning. This thesis proposes several of these conceptual and theoretical frameworks—one for integration of heterogeneous data and another for the integration of ecological data with economic decision-making and policy analysis. It then suggests new methodologies for data quality assurance. Lastly, it demonstrates the applicability of acoustic monitoring in a key land-use context: agriculture in a premium crop that is grown in global biodiversity hotspots. </p>

<p>Effective conservation strategies for sea turtles require knowledge of animal movements and protection of biologically important habitats and life history stages. For breeding adult sea turtles, understanding both their inshore and pelagic spatial patterns is imperative to the successful protection of the species and the accurate identification of their vulnerabilities. This study provides insight into the inter-nesting, post-nesting, and foraging movements of green sea turtles (<i>Chelonia mydas</i>) that nest on Bioko Island, Equatorial Guinea, by using satellite telemetry to track green turtles (n=12) during two nesting seasons (2017-18, 2018-19), and as they migrated to foraging grounds after the nesting season. These tracks were fit with a switching state space model to characterize movements, and then analyzed in relation to environmental and anthropogenic factors. Dive depth data was also used to determine utilization patterns within the water column. The 12 tagged turtles migrated for an average of 1064 km to two distinct foraging grounds, with 10 migrating west for an average of 1115 km to the coastal waters of Ghana, and 2 migrating south for an average of 1563 km to the coastal waters of Angola. Migrating turtles used both direct, pelagic migration strategies, and biphasal, coastal strategies, which included intermittent foraging throughout migrations. Dive depths varied depending on behavior, with an average of 19.3 m during inter-nesting, 12.6 m during migration and 8.5 m during foraging. Knowledge of inter-nesting habitat use, migration patterns, and foraging ground locations will be critical for the development of marine conservation management plans in the Gulf of Guinea and aide in sea turtle conservation efforts throughout the area. Additionally, spatial and dive depth data can inform zonal fishing regulators and provide information needed for modifications to fishing practices and gear that is most likely to reduce sea turtle bycatch. These data will provide a more complete understanding of marine areas critical to sea turtle conservation and aide in sustainable economic development in the Gulf of Guinea.</p><br>

In this thesis, experiments were conducted in the laboratory and the field to determine whether the provision of floral resources to hoverflies could enhance the biological control of aphids. The overall aim was to clarify hoverfly behaviour and ecology in an agroecosystem in order to understand the potential of these insects for biocontrol under a conservation biological control (CBC) regime. A preliminary experiment in New Zealand compared the effect of different coloured water-traps on catches of the hoverflies Melanostoma fasciatum (Macquart) and Melangyna novaezelandiae (Macquart). Significantly more individuals were caught in completely yellow traps than in traps with green outer walls and yellow inner walls or in completely green traps. This suggested that if a measure of hoverfly numbers relating to a particular distance along a transect is required, consideration should be given to the ability of hoverflies to detect yellow traps from a distance. The use of traps that are green outside would more accurately reflect the local abundance of hoverflies, as the insect would be likely to see the yellow stimulus only when above or close to the trap. Also, the addition of rose water significantly increased the number of M. fasciatum caught. From a suite of flowering plants chosen for their ability in other studies to increase hoverfly visit frequencies, laboratory experiments were conducted in France to determine the plant’s effectiveness at enhancing Episyrphus balteatus (De Geer) ‘fitness’, and to evaluate whether adult feeding on flowers was related to performance. Phacelia (Phacelia tanacetifolia Bentham cv. Balo), followed by buckwheat (Fagopyrum esculentum Moench cv. Katowase) and coriander (Coriandrum sativum L.) gave the optimal reproductive potential of female E. balteatus. There was no correlation between pollen and nectar consumption, and there was no discernible positive correlation between the quantity of pollen ingested and the resulting female performance. Phacelia and buckwheat were then studied as resource subsidies in the field in New Zealand. The effect of incorporating phacelia or buckwheat in the margins of 5 m x 5 m broccoli plots was tested for hoverfly activity and floral ‘preferences’. Hoverflies which had fed on phacelia and buckwheat pollen were found up to 17.5 m from the floral strips and females of M. fasciatum and M. novaezelandiae consumed more phacelia pollen than that of buckwheat in the field. These results support the choice of phacelia as an ideal floral resource subsidy in crops for enhanced biological control by these New Zealand species. The need for studying hoverfly movement in a large-scale field experiment was apparent from the field studies, so the next experiment was carried out in a field 450 × 270 m and flies were marked via their ingestion of the pollen of phacelia. The focus was on the proportion of flies having consumed the pollen. Although large quantities of pollen were found in some hoverfly guts, most did not contain phacelia pollen and very few were captured at 50 m from phacelia, compared with numbers at the border of the floral strip. A possible explanation was that hoverflies feed on a large variety of pollen species, reducing the relative attraction of phacelia flowers. Another possibility was that hoverflies dispersed from the phacelia away from the crop. Also, pollen digestion rates are likely to be a factor. Finally, a series of experiments was conducted in the field and laboratory to study hoverfly efficacy through oviposition and larval behaviour. In field experiments, female M. fasciatum and M. novaezelandiae laid more eggs where buckwheat patches were larger; however higher oviposition rates did not lead to improved aphid population suppression. In greenhouse experiments, larvae of E. balteatus could initiate a decline in aphid numbers at the predator: prey ratio 1: 8.3, however this control did not persist. Experiments in the laboratory showed that hoverfly larvae became more active and left the system while aphid numbers declined or numbers of larvae increased. This behaviour was caused by two factors: hunger and avoidance of conspecific larvae. Further experiments showed that the avoidance of conspecifics was caused by mutual interference rather than cannibalism. The results of this work highlight the importance of hoverfly dispersal ability. Given the observations of foraging behaviour of females and mutual interference observed between larvae, and the lack of success in CBC by hoverflies in experiments at the crop scale, it is essential to assess the impact of insect predators and parasitoids at a landscape scale.

Fragmentation of forest habitat by urban and rural development has had profound effects on the distribution and abundance of many native species; however, little is known about the ecological processes driving patterns in community structure (species richness and composition) of host-specialised herbivores in modified habitats. I examined patterns in community structure of 9 specialist and 19 generalist invertebrate herbivores of cabbage trees (Cordyline australis Laxmanniaceae) across a highly-modified landscape. I found that, although species richness of specialists was highest in forest sites, the majority of host-specialised species were not restricted to forest habitats and were as widespread as many generalists. In terms of site occupancy, only two specialist and four generalist species were rare. I show that patterns of species occupancy and abundance reflect differing susceptibility to habitat modification, with landscape-level variation an important predictor of abundance for nearly all species. When species occurrences and life history traits were considered I did not find strong evidence for the importance of dispersal ability, which suggests that habitat variability had a stronger organising effect on the community. In a replicated common garden experiment, I found distinct regional patterns in the community structure of the specialist invertebrates occurring on different phylogenetic groups of C. australis. In contrast, community structure of generalist herbivores did not differ significantly among host genotypes. I speculate these patterns are due to historical changes in the distribution of cabbage trees in the Southern phylogenetic region that caused specialised herbivores to become locally adapted on populations of low genetic diversity following expansion after the last glacial maximum. However, this consistent selection pressure did not occur in the Northern region where C. australis habitat has been more consistently available over the past tens of thousands of years, reflected in higher host genetic diversity. This study has advanced our understanding of the patterns in community structure of an indigenous, host-specialised fauna in a highly modified and fragmented urban and rural landscapes.

The long-tailed bat (Chalinolobus tuberculatus) is a threatened species endemic to New Zealand. Historical anecdotes indicate that long-tailed bat populations have declined. However, it is unknown if all populations have declined and if declines are historical or ongoing. Thus, the development and implementation of a national network of long-tailed bat monitoring sites is a priority of the Department of Conservation's Bat Recovery Plan. Potentially, information gained from a national monitoring programme would assist conservation managers to target resources towards those areas where bat populations are declining and provide baseline information to assist managers to gauge the impact of management techniques on bat populations. Of critical importance is that unless it can be demonstrated that long-tailed bat populations have declined and that, that decline is real, management will not be initiated. The aim of this research was to investigate aspects of the ecology of long-tailed bats that would influence the development of a monitoring programme. The distribution, roost selection, habitat use, and activity patterns of a long-tailed bat population that persisted in the Waitakere Ranges, Auckland, were investigated. A study of the Waitakere Ranges long-tailed bat population was significant because (1) the Waitakere Ranges is the northern most location at which long-tailed bats have been researched; (2) the study was the first to be conducted on a long-tailed bat population that persisted in kauri Agathis australis dominated forest remnants; (3) the long-tailed bat population in the Waitakere Ranges is the only known extant population in close proximity to a major urban area; and (4) the factors that are attributed to long-tailed bat population declines (i.e., forest clearance, predation and urbanisation; O'Donnell, 2000) are likely to be ongoing and intensified in the Waitakere Ranges. Twenty roosts were located. Most roosts (85%) were in kauri, 2 were in mature rimu (Dacrydium cupressinum) and 1 was in a kahikatea (Dacrycarpus dacrydioides). All roosts were in large, live, emergent trees. Mean height of roost trees was 38.4 ± 1.3 m and average DBH was 186 ± 12 cm. The entrances of six roost cavities were identified all were located in minor lateral branches in the crown of the tree and were primarily near the tip of branches. Roosts were a mean height of 24.6 ± 3.7 m above ground level. It was argued that roosts in the crowns of kauri were inaccessible to terrestrial mammalian predators. Twenty-eight roost watches were conducted. The average number of bats counted leaving roosts was 10.0 ± 1.5 (maximum = 24). Roosts were occupied by radio-tagged bats for an average of 2.0 ± 0.4 days, and 11 (55 %) were occupied for only one day. Roost size was the lowest reported for long-tailed bats. Roost switching also appeared higher than in other populations that have been studied. It was argued that morepork predation may have a significant impact on the population viability of the population. As in other studies long-tailed bats were found to forage over modified habitats including over farmland, dwellings, orchards and along streams and roads with little vehicular traffic. Long-tailed bats foraged throughout the Waitakere Ranges and their foothills. Bat activity was highly variable. Of the environmental variables analysed, temperature was found to have the greatest influence on bat activity. There were seasonal and habitat influences on bat activity. The relationship between sample sizes, variation in bat detection rates and desired statistical power using automatic bat detectors to monitor populations of bats was explored. A power analysis on activity data collected with automatic bat detectors indicated that declines in bat populations would need to be reflected in declines of greater than fifty percent in bat activity before monitoring programmes would have sufficient power to detect declines in activity. It was recommended that monitoring programmes should concentrate on intensive presence – absence surveys rather than long-term studies at a few sites.

Two faces of ZOO Perception of zoos from the view of their supporters and opponents The main topic of this thesis is a role of zoological gardens in the modern society, especially their importance to conservation of biodiversity as well as to progress in public education. I was interested not only in the opinions and the attitudes of the supporters of zoological gardens, but also in views of their opponents as the opposite side. In the case of the opponents I wanted to reveal if their criticism of zoos is based on negative emotions (bad feeling from breeding animals in captivity and thinking about their rights to freedom) or rise from real inadequacies (for example bad living conditions of animals). So in the theoretical part of the thesis I was concerned about contributions of zoological gardens in many ways as well as about their limitations, mostly mentioned by their opponents. To be more precise in drawing conclusions I made my own empirical research which was based on questionnaires and interviews with directors of certain zoos in the Czech Republic. The main aim of my research was not only a usual opinion poll, but also a detection of differences in opinions and personal characteristics between supporters and opponents of zoos. I also wanted to find out which aspects of zoos are highly...

<p>Here, we seek to address the importance of biodiversity in plant ecosystems. We examined the productivity-diversity relationship through the lens of the modern coexistence theory, using a combination of both experimentation and mathematical simulation. We did this by tracking and comparing the productivity of mixed and monoculture plots, analyzing the growth responses of individual trees at forest plots (Chapter 1), confirming the productivity-diversity relationship in a greenhouse experiment using local herbaceous plants (Chapter 2), and finally simulating the productivity response of monoculture vs polyculture plantations to specialist enemy attack (Chapter 3).</p><p>It is no surprise that biodiversity has been decreasing at an exponential rate on the global scale because of effects such as habitat fragmentation, invasive species, spreading pathogens, and anthropogenic influences. Ecologists often found that plants in more species rich locations often exhibited higher productivity and stability in the face of stress. One such phenomenon is known as the productivity diversity relationship that implies biodiversity is key to sustaining ecosystems. Notably, while efforts are being put forth to address ecosystem destruction, much of the current tree planting strategy in the USA is based on timber profit rather than forest productivity and species coexistence with tree biology often being a secondary consideration. These thought processes are in opposition with historical experiments that indicate polyculture communities create more biomass making them significantly more productive than monocultures. However, we also acknowledge that it is not simply biodiversity that must be taken into consideration for a productive ecosystem but also species interaction through coexistence indicate whether or not a community will persevere. These interactions can be addressed using the modern coexistence theory which depends on these complementarity and fitness similarities for species to coexist through time. Here, we seek to address the importance of biodiversity in plant ecosystems. We examined the productivity-diversity relationship through the lens of the modern coexistence theory, using a combination of both experimentation and mathematical simulation. We did this by tracking and comparing the productivity of mixed and monoculture plots, analyzing the growth responses of individual trees at forest plots (Chapter 1), confirming the productivity-diversity relationship in a greenhouse experiment using local herbaceous plants (Chapter 2), and finally simulating the productivity response of monoculture vs polyculture plantations to specialist enemy attack (Chapter 3). Our research across the combination of approaches used found that species with overlapping niches and very different finesses will exclude one another due to high competition. Further, the productivity diversity correlation is necessary for ecosystem growth, but it is not sufficient for species coexistence. However, species can maintain this positive relationship despite a lack of coexistence if they maintain niche complementarity. Lastly, using a theoretic game model we were able to identify the impacts of a specialist pest on polyculture and monoculture forest. These results showed that a polyculture forest was more productive than that of a monoculture forest regardless of the presence of a specialist enemy. The results of the multiple threads of evidence found from these combined experiments indicate that while the productivity diversity correlation is important to ecosystems it is likely due to the impacts of niche complementarity that determine whether or not species will be productive within an ecosystem.</p>

<p>Field-edge buffers are a promising way to address nonpoint source pollution from agricultural runoff, but concentrated runoff flow often renders standard fixed-width linear buffers ineffective. AgBufferBuilder (ABB) is a tool within ESRI ArcMap Geographic Information Systems software that designs and evaluates targeted, nonlinear buffers based on hydrologic modeling and other field-specific parameters. We tested ABB on n=45 Areas of Interest (AOIs) stratified based on estimated sediment loading across three sub-watersheds within Michigan’s Saginaw Bay watershed to evaluate the effectiveness of ABB relative to existing practices across a wide range of landscape conditions. We modeled tractor movement around ABB buffer designs to assess more realistic versions of the likely final designs. ABB regularly failed to deliver the desired 75% sediment capture rate using default 9 m x 9 m output raster resolution, with Proposed buffers capturing from 0% to 68.49% of sediment within a given AOI (mean=37.56%). Differences in sediment capture between Proposed and Existing buffers (measured as Proposed – Existing) ranged from -48% to 66.81% of sediment (mean=24.70%). Proposed buffers were estimated to capture more sediment than Existing buffers in 37 of 45 AOIs, representing potential for real improvements over Existing buffers across the wider landscape. In 13 of 45 AOIs, ABB buffers modified for tractor movement captured more sediment than Existing buffers using less total buffer area. We conducted a collaborative design process with three Saginaw Bay watershed farmers to assess their willingness to implement ABB designs. Feedback indicated farmers may prefer in-field erosion control practices like cover cropping and grassed waterways over field-edge ABB designs. More farmer input is needed to better assess farmer perspectives on ABB buffers and to identify preferred data-based design alternatives. Engineered drainage systems with raised ditch berms and upslope catch basins piped underground directly into ditches were encountered several times during site visits. ABB only models surface flow and does not recognize drain output flow entering waterways. Modified ABB functionality that models buffers around drain inlets would greatly improve its functionality on drained sites. This may be accomplishable through modification of user-entered AOI margins but requires further investigation. Unfortunately, the existing tool is built for outdated software and is not widely accessible to non-expert users. We suggest that an update of this tool with additional functionality and user accessibility would be a useful addition in the toolbox of conservation professionals in agricultural landscapes.</p>

Enquanto alguns paises tem o ecoturismo como a sua principal fonte de renda, o Brasil nao explora a atividade de forma planejada, o que resulta, muitas vezes, na degradacao do meio ambiente e na descaracterizacao da diversidade cultural local. Assim sendo, este estudo pretende contribuir para a compreensao do processo de adaptacao de uma comunidade tradicional ao fenomeno do ecoturismo e dar um alerta para a necessidade de considerar a identidade cultural das populacoes locais como bem patrimonial e como elemento de risco no planejamento da atividade. Com esse intuito, foi realizado um Estudo de Caso, durante os anos de 2000 e 2001, com uma familia residente na praia de Martim de Sa, caracterizada como caicara. Essa comunidade foi escolhida, pois reside em um local onde o ecoturismo esta apenas comecando, fato que permitiu refletir a respeito das consequencias da atividade. Martim de Sa, apesar de estar inserida nos limites de duas Unidades de Conservacao da Natureza, esta sobre forte ameaca de degradacao ambiental devido a especulacao imobiliaria incentivada pelo crescimento do fluxo turistico sem planejamento e facilitado pela falta de fiscalizacao dos orgaos ambientais responsaveis por essas areas. Para o desenvolvimento do Estudo de Caso foram utilizadas nesta pesquisa a Observacao Participante e as entrevistas estruturadas com a finalidade de caracterizar a comunidade local e os turistas e, a Historia de Vida, para a reconstituicao da historia do nucleo receptor.