No description available.

The present work describes the phytochemistry study and of biological activity of the species Scutellaria racemosa Pers (Labiatae) and Pfaffia tuberosa Spreng (Amaranthaceae). Four compounds were isolated of the S. racemosa Pers: lupeol (14), oroxilin A (10), dinatin (12) and oroxyloside (11). The antimicrobial and cytotoxic activities and the capacity of inhibition of enzymes prolyl oligopeptidase (POP), dipeptidyl peptidase IV (DPP IV) and acetylcholinesterase (AChE) of the crude extract (EB), fractions and isolated compounds of the S. racemosa Pers were evaluated. The n-hexane (FH) and ethyl acetate (FA) fractions were the most active against Staphylococcus epidermidis, Bacillus subtilis and Pseudomonas aeruginosa. The evaluation of the crude extract and fractions using the Brine Shrimp Lethality Test indicated that this plant does not present toxicity. About the tests of enzymatic inhibition, the ethyl acetate (FA) and n-butanol (FB) fractions of S. racemosa Pers and the compounds dinatin (12) and oroxyloside (11) demonstrated significant capacity of inhibition of the POP. The inhibition promoted for the dinatina (12) (100 μM) corresponded 43% and for the oroxyloside (11) (100 μM) corresponded 34% of the total enzyme tested. The crude extract (EB) and the respective fractions of the Pfaffia tuberosa Spreng were also evaluated about the antimicrobial and cytotoxic activities and of enzymatic inhibition of the POP, DPP IV and AChE. Through these assays, it was verified that the crude extract (EB) and the fractions of the Pfaffia tuberosa Spreng do not present important antimicrobial and cytotoxic activity. In relation to the tests of inibitory activity of the POP, the dichloromethane (FD) and ethyl acetate (FA) fractions present IC50 of 21.4 and 28.5 μg/mL against of POP, respectively. Dichloromethane, ethyl acetate and n-butanol fractions (FD, FA and FB) presented low activity against DPP IV (< 20%). The ethyl acetate (FA) and n-butanol (FB) fractions showed significant inhibition of the AChE in the amounts, 6.25 and 25 μg, respectively. / O presente trabalho descreve o estudo fitoquímico e a atividade biológica das espécies Scutellaria racemosa Pers (Labiatae) e Pfaffia tuberosa Spreng (Amaranthaceae). Quatro compostos foram isolados da S. racemosa Pers: lupeol (14), oroxilina A (10), dinatina (12) e oroxilosídeo (11). A atividade antimicrobiana, citotóxica e a capacidade de inibição das enzimas prolil oligopeptidase (POP), dipeptidil peptidase IV (DPP IV) e acetilcolinesterase (AChE) do extrato bruto (EB), frações e compostos isolados da S. racemosa Pers foram avaliadas. As frações n-hexano (FH) e acetato de etila (FA) foram as mais ativas contra Staphylococcus epidermidis, Bacillus subtilis e Pseudomonas aeruginosa. A avaliação do extrato bruto (EB) e frações através do teste de letalidade frente a Artemia salina indicou que esta planta não apresenta toxicidade significativa. Quanto aos testes de inibição enzimática, as frações acetato de etila (FA) e n-butanol (FB) de S. racemosa Pers e os compostos dinatina (12) e oroxilosídeo (11) demonstraram significativa capacidade de inibição da POP. A inibição promovida pela dinatina (12) (100 μM) correspondeu a 43% e pelo oroxilosídeo (11) (100 μM) correspondeu a 34% do total de enzima testada. O extrato bruto (EB) e as respectivas frações da Pfaffia tuberosa Spreng também foram avaliadas quanto a atividade antimicrobiana, citotóxica e de inibição enzimática da POP, DPP IV e AChE. Através destes ensaios, verificou-se que o extrato bruto (EB) e a frações da Pfaffia tuberosa Spreng não apresentam importante atividade antimicrobiana e citotóxica. Em relação aos testes de atividade inibitória da POP, as frações diclorometano (FD) e acetato de etila (FA) foram as que apresentaram os melhores resultados, com IC50 de 21,4 e 28,5 μg/mL, respectivamente. As frações diclorometano, acetato de etila e n-butanol (FD, FA e FB) apresentaram baixa capacidade de inibição da DPP IV (< 20%). As frações acetato de etila (FA) e n-butanol (FB) apresentaram significativa inibição da AChE, nas quantidades de 6,25 e 25 μg, respectivamente.

A disfunção cardíaca é um dos principais desfechos da doença renal crônica, sendo que o eixo sistema renina angiotensina (SRA) é um mediador chave nessa condição. Estudos têm demonstrado que os inibidores da dipeptidil peptidase IV (IDPPIV), uma classe de drogas utilizadas no tratamento do diabetes tipo II, são capazes de exercer efeitos renoprotetores e cardioprotetores, entretanto, os efeitos dos IDDPIV sobre o tecido cardíaco frente a uma injúria renal ainda não foram descritos. Assim, esse estudo teve como objetivo investigar se a inibição da DPPIV atenua a disfunção e o remodelamento cardíaco em ratos com DRC e se esses efeitos se associam a alterações no SRA. Para este fim, ratos Wistar (N=37) com idade entre 2-3 meses, foram submetidos à nefrectomia 5/6 para indução da DRC. Após a cirurgia, os ratos foram randomizados em 2 grupos: Nx (tratados com veículo) e Nx + IDPPIV (tratados com sitagliptina - 200 mg/Kg/dia). Ratos submetidos à cirurgia fictícia foram utilizados como controles (sham). Como esperado, após oito semanas de seguimento, o grupo Nx apresentou acentuada disfunção renal. Por outro lado, nos ratos tratados com sitagliptina, a queda do ritmo de filtração glomerular (RFG) foi significativamente atenuada, bem como a creatinina sérica, albuminúria e pressão arterial caudal em relação ao grupo Nx. Curiosamente, tanto a atividade quanto a expressão proteica e gênica da DPPIV cardíaca estavam aumentadas em ratos Nx comparado aos ratos controles. As análises histológicas mostraram que os cardiomiócitos de ratos Nx apresentaram maior volume nuclear e fibrose intersticial cardíaca em relação ao sham. Por outro lado, nos ratos tratados com sitagliptina o volume nuclear dos cardiomiócitos e fibrose estavam reduzidos em relação aos ratos Nx. A função sistólica não se mostrou distinta entre os três grupos de ratos. Todavia, o tempo de relaxamento isovolumétrico (TRIV) foi maior em Nx do que em sham, como sugestivo de disfunção diastólica associada à DRC e o tratamento com sitagliptina foi capaz de atenuar o TRIV. A concentração de angiotensina II cardíaca estava aumentada nos ratos Nx em relação aos ratos sham e o tratamento com sitagliptina foi capaz de impedir sua elevação. Em conjunto, os nossos dados sugerem que a inibição da DPPIV em ratos com DRC atenua o remodelamento e a disfunção cardíaca, e que esses efeitos estão envolvidos ao menos em parte, com a redução nos níveis de angiotensina II. Esse é o primeiro trabalho a demonstrar a interação da DPPIV com o SRA intracardíaco em modelo de DRC, e abre portas para estudos envolvendo os mecanismos que levam a essa associação nas síndromes cardiorrenais / Cardiac dysfunction is one of the main outcomes of chronic kidney disease, with the axis system renin angiotensin (RAS) being a key mediator in this condition. Studies have shown that dipeptidyl peptidase IV (IDPPIV) inhibitors, a class of drugs used in the treatment of type II diabetes, are capable of exerting renoprotective and cardioprotective effects, however, the effects of IDDPIV on cardiac tissue against renal injury were not described. Thus, this study aimed to investigate whether inhibition of DPPIV attenuates cardiac dysfunction and remodeling in rats with CKD and whether these effects are associated with changes in RAS. For this purpose, Wistar rats (N = 37) aged 2-3 months were subjected to 5/6 nephrectomy for induction of CKD. After surgery, the rats were randomized into 2 groups: Nx (treated with vehicle) and Nx + IDPPIV (treated with sitagliptin - 200 mg/kg/day). Sham operated rats were used as controls. After eight weeks of treatment, we identified that the Nx group had marked renal dysfunction. On the other hand, in rats treated with sitagliptin, the decrease in RFG was significantly attenuated, as well as serum creatinine, albuminuria and caudal blood pressure in relation to the Nx group. Interestingly, both the activity and the protein and gene expression of the cardiac DPPIV were increased in Nx rats compared to the control rats. Additionally, histological analysis showed that the cardiomyocytes of Nx rats presented greater nuclear volume and cardiac interstitial fibrosis compared to sham. Conversely, in animals treated with sitagliptin the nuclear volume of cardiomyocytes and fibrosis were reduced in relation to Nx rats. Systolic function was not different among the three groups of rats. However, the isovolumic relaxation time (IVR) was higher in Nx than in sham, as suggestive of CKD-associated diastolic dysfunction and treatment with sitagliptin was able to attenuate IVRT. Cardiac angiotensin II levels were elevated in Nx rats relative to sham rats. Treatment with sitagliptin prevented their elevation. Taken together, data suggest that inhibition of DPPIV in rats with CKD attenuates remodeling and cardiac dysfunction, and that these effects are at least partially involved with the reduction in angiotensin II levels. This study is the first to demonstrate an interaction of DPPIV with the intracardiac RAS in a CKD model, and will help further studies focusing the mechanisms that lead this association in cardiorrenal syndromes

L’objectif principal de la thèse a été de fournir une révision de l'édition critique, avec une traduction et un commentaire des scholia du ps.Acron au quatrième livre des Carmina. Considérer le quatrième livre a répondu à l'exigence de déterminer une section 'indépendante' dans la production lyrique d'Horace.Le corpus pseudacronian se présente comme un ensemble de scholies à l'œuvre d'Horace pas reconductible à une individualité ou à un moment historique bien précis mais qui résulte comme la conséquence d'une stratification commencée au V siècle et qui a duré jusqu'au Moyen Age attribué de manière erronée à Elenius Acron, auteur du IIè siècle d.C.J'ai proposé des interventions critiques à l'édition de O. Keller publié pour la Teubneriana (Leipzig 1902).Dans la rédaction du commentaire, une grande importance a été conférée à l'évaluation des enquêtes littéraires dans le texte pseudacronian. L’étude comporte également une focalisation attentive sur les typologies de caractéristiques, très diffuses dans les commentaires anciens, grâce auxquels on peut déduire les compétences linguistiques, rhétoriques, littéraires, mythiques, historiennes.Le travail a été complété par un essai initial organisé en sections: la première partie concerne la réception du texte des auctores, et en particulier d'Horace, dans le contexte de l'école. Une seconde section concerne les caractéristiques du commentaire au quatrième livre des Carmina, illustratifs pour l'évaluation de la technique exégétique du ps.Acron. / The main objective of the thesis was that to provide a review of the critical edition, with a translation and a commentary of the scholia pseudacroniana on The Fourth Book of the Odes of Horace. In the vast field of the Horatian lyric, it's been considered un 'independent' section. The pseudacronian corpus looks like a jumble of Horace's scholia not due to an individuality or to a precise historic moment: they are the result of a stratification began in the fifth century and lasted until the Middle Ages, mistakenly attributed to Elenius Acron, author of the second century AD. Some critical interventions have been proposed to the edition of reference, that of O. Keller, published for the series Teubneriana (Pseudacronis Scholia in Horatium vetustiora, Leipzig 1902).During the draft of the commentary I've given great importance to the evaluation of the literary investigations proposed in the pseudacronian text. It's not even a careful focus on the types of notes, too, from which we deduce the linguistic, rhetorical, literary, mythical, historical competences. The work has been completed by an essay divided by sections: the first part concerning the receipt of the text of auctores, and in particular Horace, in the context of the school. The second section concerns the characteristics of the commentary on the fourth book of Odes, taken as an example for the evaluation of ps.Acron's exegetical technique.

A necessidade de investimento em saneamento no Brasil é essencial, pois está vinculada à melhoria da qualidade de vida da sociedade. Os projetos de saneamento exigem altos investimentos e, para garantir a prestação dos serviços, é necessário um sistema complexo de infraestrutura. Os elevados custos envolvidos e a limitação de recursos financeiros fazem com que seja preciso estabelecer prioridades para execução de projetos de saneamento. Com efeito, o objetivo desta pesquisa é propor um modelo multicritério de decisão para apoiar decisões de hierarquia de projetos de abastecimento de água e esgotamento sanitário. A pesquisa abordada tem enfoque qualitativo, sendo também vista como metodológica, pois sua finalidade é envolver métodos e procedimentos adotados como científicos. Assim, traz como escopo apoiar e estruturar o processo de decisão em que são definidos: os elementos (intervenientes, alternativas potenciais, critérios, problemática); tipos de decisão em grupo; escolha dos métodos multicritérios (PROMETHEE II & GAIA e ELECTRE IV); modelagem de preferência; sistemas de apoio à decisão (D-SIGHT e ELECTRE III-IV); avaliação de resultados e análise de sensibilidade. Procura-se garantir que a pesquisa tenha caráter prático, razão por que foi realizada a aplicação numérica do modelo no contexto da bacia dos rios Piracicaba, Capivari e Jundiaí, região sudeste do Brasil. / The need of investment in water supply and sewage projects in Brazil is substantial to improve the quality of life. These projects require high investments and, mostly, to ensure the provision of these services it is necessary a complex infrastructure. Due to the high costs associated with the lack of resources, it is relevant to prioritize projects. Thus, the purpose of this research is to propose a multicriteria decision model to support decisions hierarchy of water supply and sewage projects. This work has a qualitative and methodological approach; the goal is to inquire a scientific procedure. The object is to structure the decision-making process defined by its main concepts (actors, potential alternatives, criteria, problems), group decision making; selection of multiple criteria methods (PROMETHEE II & GAIA, ELECTRE IV); preference modeling, decision support systems (D-SIGHT and ELECTRE III-IV), evaluation and sensitivity analysis. This study seeks a practical purpose, so the proposed model, is applied in the basin of Piracicaba, Capivari e Jundiaí. The contribution here to aid similar situations where is necessary to establish priorities of sanitation projects.

O trabalho aqui desenvolvido teve como objeto o estudo estrutural e funcional de várias proteínas do fitopatógeno Xanthomonas axonopodis pv citri (Xac), dentre as quais se destacam as proteínas hipotéticas conservadas YaeQ e SufE, as proteínas RpfC, RpfF e RpfG envolvidas em quorum sensing e proteínas PilZ, FimX e PilB envolvidas na biogênese do pilus tipo IV. Para o desenvolvimento deste trabalho foram utilizadas diferentes técnicas incluindo: clonagem, expressão, purificação, desnaturação térmica, cristalografia, difração de raios-X, RMN, ensaios de 2-híbrido, produção de nocautes, mutação sítio dirigida, Western- e Far- Western, entre outras. Dentre os resultados mais importantes obtidos temos a determinação estrutural das proteínas YaeQ e PilZ pela técnica MAD. Em ambos os casos, as estruturas representaram topologias inéditas. Com base nos dados estruturais, mostramos que YaeQ pertence à família PD-(D/E)XK presente em endonucleases dependentes de magnésio, e a partir de ensaios funcionais obtivemos evidências que sugerem que YaeQ está envolvida em alguma via de reparo de DNA em Xac. A estrutura tridimensional de PilZ revelou uma inesperada variedade estrutural dentro da família PilZ e mostrou de forma clara porque ortólogos não interagem com o segundo mensageiro bacteriano, c-diGMP. A cadeia principal de PilZ foi assinalada por RMN e a estrutura secundária de PilZ em solução é consistente com aquela determinada por cristalografia. Duas proteínas que interagem com PilZ foram identificadas: PilB e FimX. Como PilZ, ambos exercem papéis na biogênese do pilus tipo IV (T4P). Mostramos que PilZ interage especificamente com o domínio EAL de FimX e que resíduos conservados na região do C-terminal de PilZ estão envolvidos na interação com PilB, mas não com FimX. Ensaios de mutação sítio dirigida mostraram que a Y22 de PilZ pode estar envolvida na regulação da interação de PilZ com FimX e com PilB. Apesar de PilZ não interagir com c-diGMP seu parceiro, FimX, interage. PilZ consegue interagir com PilB ao mesmo tempo em que interage com FimX, formando um complexo ternário que é independente da interação de FimX com c-diGMP. Com base em todos estes resultados propusemos possíveis mecanismos de ação de PilZ e FimX no controle da biogênese do T4P. Além dos resultados acima descritos, determinamos a estrutura de SufE e mostramos que esta aumenta a atividade cisteína dessulfarase de seu parceiro, SufS, em torno de 10 vezes, como ocorre com SufE-SufS de E.coli. Clonamos, expressamos, purificamos e fizemos ensaios de cristalização de algumas proteínas envolvidas no controle de quorum sensing em Xac. Tivemos êxito na cristalização do domínio HPT (histidina fosfotransferase) da proteína chave deste sistema, RpfC / The aim of the project was to perform structural and functional studies of different Xanthomonas axonopodis pv citri (Xac) proteins including the hypothetical proteins YaeQ and SufE; RpfC, RpfF and RpfG involved in the quorum sensing and PilZ, FimX and PilB that play roles in type IV pilus (T4P) biogenesis. Several experimental techniques were employed including cloning, expression and purification of recombinant proteins, thermal denaturation, protein crystallography, X-ray diffraction, NMR, two-hybrid assays, Western- and Far-Western Blotting assays, site direct mutagenesis, and the production of Xac knockouts strains. The most important results include the determination of the three-dimensional crystal structures of PilZ and YaeQ using the MAD technique. In both cases, the structures reveled new protein topologies. The comparison of the YaeQ structure with others deposited in public databases revealed that YaeQ proteins represent a new variation within the PD-(D/E)XK magnesium dependent endonucleases superfamily. Functional assays suggest that YaeQ may be envolved in DNA repair in Xac. The PilZ three-dimensional structure revealed an unexpected structural variation within the PilZ domain superfamily and showed why PilZ orthologs are not able to bind the important bacterial second messenger, c-diGMP. We assigned the PilZ main chain by NMR and used this information to demonstrate that the PilZ secondary structure in solution is consistent with the PilZ crystal structure. We identified two proteins that interact with PilZ: PilB and FimX. As with PilZ, both PilB and FimX are involved in T4P biogenesis. PilZ binds specifically to the EAL domain of FimX and the conserved residues located in the PilZ unstructured C-terminal region contribute to binding with PilB but not with FimX. Site direct mutagenesis studies showed that PilZ residue Y22 is necessary for its capability to interact with both PilB and FimX. Although PilZ does not bind c-diGMP, her partner, FimX, does. We present evidence that PilZ can bind simultaneously to FimX and PilB, forming a ternary complex that is independent of c-diGMP. These results allow us to propose possible mechanisms by which PilZ and FimX control T4P biogenesis. Other results obtained during this period include the resolution of the crystal structure of the SufE protein from Xac using the molecular replacement technique. We show that SufE induces a 10-fold increase in the cysteine desulfurase activity of SufS, similar to that observed for the SufE-SufS complex from E. coli. Several proteins involved in quorum sensing and c-di-GMP signaling were cloned, expressed and submitted to crystallization trials. Crystals of the HPT (histidine phophotransferase) domain) of the RpfC sensor histidine kinase were obtained

O presente trabalho tem como objetivo analisar a concepção, formalização e ocupação da Marquise do Parque Ibirapuera, através de uma trajetória que se inicia com a definição do programa de necessidades para as comemorações do IV Centenário da cidade de São Paulo, na década de 50 do século passado. Onde foi tomada a decisão de realizar a construção do que seria o maior parque público da cidade, somado a um conjunto edificado que centralizaria a maioria das atividades propostas durante o período de festividades. Ao mesmo tempo que essa grande obra deveria mostrar a força do progresso do Estado, serviria de legado as próximas gerações. Assim, a construção do programa funcional e sua posterior concepção arquitetônica, de autoria de Oscar Niemeyer e equipe, se mostram fundamentais como fonte de análise para entender o surgimento do elemento de ligação, a grande marquise, entre os pavilhões temáticos propostos. A primeira parte do trabalho examina a evolução do projeto, seus precedentes e as adversidades enfrentadas durante o período de construção. A segunda parte diz respeito a observação e coleta de dados das atividades realizadas sob esta grande cobertura após a conclusão de sua construção. Demonstrando, através de uma amostragem significativa, sua capacidade de servir de suporte a inúmeros usos, sejam eles programados ou espontâneos, no decorrer dos ultimos 60 anos. Superando seu programa inicial de ligação e suporte aos pavilhões com que está conectado e se consolidando como um lugar de intenso convívio social e de encontros, aberto a imprevisibilidade, ao uso indeterminado. / This study aims to analyze the design, formalization and occupation of the Ibirapuera Park\'s Great Marquee, through a trajectory that begins with the definition of the architectural brief for the IV Centennial of the city of São Paulo celebrations in the 1950\'s. Then was the decision to undertake the construction of what would be the largest public park in the city, plus a built set centralizing most of the proposed activities during the festivities. At lhe same time this great work should show the strength of the State\'s progress, it would serve as a legacy to future generations. Thus, the construction of functional program and subsequent architectural design of Oscar Niemeyer and team, show up as a source of fundamental analysis to understand the emergence of the connecting element, a large marquee, between the proposed thematic pavilions. Showing the evolution of the design, its precedents and adversities during the construction period. Conforming the first part of this work. The second part of the work is concerned with the observation and data collection of the activities performed under this great cover upon completion of its construction. Demonstrating, through a significant sample size, its architectural ability to provide support to a number of uses, whether preprogrammed or spontaneous, over the last 60 years. Overcoming its initial briefing as a connection and support to the pavilions, it consolidates itself as a place of intense social life and meeting, open to unpredictability, to the indefinite use.

Abstract The tumor microenvironment (TME) is critically important for tumor development. The microenvironment consists of fibroblasts, endothelial and immune cells as well as extracellular matrix (ECM), proteases and various other soluble factors produced by the cells. It is challenging to develop methods that appropriately mimic the human microenvironment, but this effort is essential in order to reliably elucidate the properties of potential anti-tumor drugs. The aim of this study was to create new 3D organotypic invasion models based on human tissue that would be used to study the effects of the anti-angiogenic molecules arresten and endostatin on tongue squamous carcinoma cells. The classic way to study cancer invasion has been to use a collagen invasion model that is created by mixing rat type I collagen, matrix produced by mouse EHS tumor cells and human fibroblasts. Our research group has developed a novel human myoma tissue based invasion model, which is composed of several different cell types and molecules that are normally present in the human TME. We show how this model is suitable for invasion studies, not only for oral cancer, but for other invasive cell lines as well. There are several matrix-derived fragments that have been shown to possess anti-angiogenic activity. Arresten is a 26 kDa fragment that is cleaved from type IV collagen and is known to inhibit angiogenesis, the formation of new capillaries and tumor growth in vivo. However, its effect on the tumor microenvironment in addition to endothelial cells has not been studied. We show that arresten also directly affects oral cancer cells by decreasing their migration and invasion as well as tumor size, invasion and angiogenesis in in vivo mouse xenografts. Another inhibitor of angiogenesis, endostatin, is cleaved from type XVIII collagen. It has been shown to suppress angiogenesis and tumor growth without toxicity or side effects in mouse models. Our studies show that endostatin directly affects tongue squamous carcinoma cells by reducing their invasion and spreading in organotypic 3D assays and mouse tumor models. In summary, arresten and endostatin are anti-angiogenic as well as anti-invasive molecules and therefore potential cancer drugs. They seem to have a direct effect on carcinoma cells making the cells less invasive. The myoma model allows us to study the effects of anti-cancer molecules with a new prospective. / Tiivistelmä Syövän mikroympäristö on erittäin tärkeä syövän kehittymisen kannalta. Se koostuu fibroblasteista, endoteeli- ja immuunisoluista, soluväliaineesta, proteaaseista ja monista muista solujen tuottamista liukoisista molekyyleistä. On haastavaa kehittää uusia menetelmiä, jotka jäljittelisivät oikeaa ihmisen syövän mikroympäristöä, mutta se on välttämätöntä uusien syöpälääkkeiden tutkimiseksi. Väitöstutkimuksen tavoitteena oli kehittää kolmiulotteinen ihmisen myoomakudokseen perustuvan invaasiomalli, jonka avulla voisimme tutkia verisuonten kasvua estävien arresten ja endostatin molekyylien vaikutusta kielisyöpäsoluihin. Aiemin syövän invaasiota on tutkittu käyttämällä klassista kollageeni-invaasiomallia, joka tehdään sekoittamalla rotan tyypin I kollageeniä, hiiren sarkoomasolujen tuottamaa matriksia ja ihmisen fibroblasteja. Tutkimuksissamme kehitimme uuden invaasiomallin, joka perustuu ihmisen myoomakudokseen. Tutkimuksessa sen todettiin sisältävän monia erilaisia soluja ja molekyylejä, joita on normaalistikkin syövän mikroympäristössä. Lisäksi osoitimme, että se sopii invaasiotutkimuksiin monille syöpätyypeille. Soluvälitilamatriksista pilkotaan useita erilaisia molekyylejä joilla on osoitettu olevan angiogeneesia hillitseviä ominaisuuksia. Arresten on 26 kDa kokoinen polypeptidi, jota pilkotaan tyypin IV kollageenista. Sen tiedetään vähentävän angiogeneesia – uusien verisuonten muodostumista ja syövän kasvua in vivo. Sen vaikutuksia muihin kuin endoteelisoluihin ei ole kuitenkaan tutkittu. Tutkimuksissamme se vaikutti suoraan kielisyöpäsoluihin vähentäen niiden liikkumista ja invaasiota kolmiulotteisissa organotyyppisisssä malleissa ja hiirimallissa. Toinen tutkimamme angiogeneesin inhibiittori on endostatin, jota pilkotaan tyypin XVIII kollageenista. Sen tiedetään vähentävän angiogeneesia hiirimalleissa ilman toksisia sivuvaikutuksia. Me osoitimme tutkimuksissamme, että se vaikuttaa suoraan kielisyöpäsoluihin vähentäen niiden invaasiota ja leviämistä 3D organotyyppisissä malleissa sekä hiirikokeissa. Koska arresten ja endostatin ovat anti-angiogeenisiä ja anti-invasiivisia molekyylejä, ne ovat täten potentiaalisia syöpälääkkeitä. Ne näyttäisivät vaikuttavan suoraan syöpäsoluihin vähentämällä niiden invaasiota. Myoomainvaasiomalli mahdollistaa syöpää ehkäisevien molekyylien tutkimisen uudella ja todenmukaisemmalla tavalla.

My research was focused on understanding the importance of mammalian RAD51 paralogs in genome maintenance and suppression of tumorigenesis. The investigation carried out during this study has been addressed toward gaining more insights into the involvement of RAD51 paralogs in DNA damage signalling, repair of various types of lesions including double stranded breaks (DSBs), daughter strand gaps (DSGs), interstrand crosslinks (ICLs), and in the protection of stalled replication forks. My study highlights the molecular functions of RAD51 paralogs in Fanconi anemia (FA) pathway of ICL repair, in the ATM and ATR mediated DNA damage responses, in homologous recombination (HR), and in the recovery from replication associated lesions. My research also focused on the development of a novel photoinducible ICL agent for targeted cancer therapy. The thesis has been divided into following sections as follows: Chapter I: General introduction that describes about DNA damage responses and the known functions of RAD51 paralogs across species in DNA repair and checkpoint The genome of every living organism is susceptible to various types of DNA damage and mammalian cells are evolved with various DNA damage surveillance mechanisms in response to DNA damages. In response to DNA damage, activated checkpoints arrest the cell cycle progression transiently and allow the repair of damaged DNA. Upon completion of DNA repair, checkpoints are deactivated to resume the normal cell cycle progression. Defective DNA damage responses may lead to chromosome instability and tumorigenesis. Indeed, genome instability is associated with several genetic disorders, premature ageing and various types of cancer in humans. The major cause of chromosome instability is the formation of DSBs and DSGs. Both DSBs and DSGs are the most dangerous type of DNA lesions that arise endogenously as well as through exogenous sources such as radiations and chemicals. Spontaneous DNA damage is due to generation of reactive oxygen species (ROS) through normal cellular metabolism. Replication across ROS induced modified bases and single strand breaks (SSBs) leads to DSGs and DSBs, respectively. Such DNA lesions need to be accurately repaired to maintain the integrity of the genome. To understand the various cellular responses that are triggered after different types of DNA damage and the possible roles of RAD51 paralogs in these processes, chapter I of the thesis has been distributed in to multiple sections as follows: Briefly, the initial portion of the chapter provides a glimpse of various types of DNA damage responses and repair pathways to deal with the lesions arising from both endogenous as well as exogenous sources. Owing to the vast range of cellular responses and pathways, the following section provides the detailed description and mechanisms of various pathways involved in taking care of wide range of DNA lesions from SSBs to DSBs. Subsequent section of chapter I provides a comprehensive description of maintenance of genome stability at the replication fork and telomeres. Germline mutations in the genes that regulate genome integrity cause various genetic disorders and cancer. Mutations in ATM, ATR, MRE11, NBS1, BLM and FANC (1-16), BRCA1 and BRCA2 that are known to regulate DNA damage signaling, DNA repair and genome integrity lead to chromosome instability disorders such as ataxia-telangiectasia, ATR-Seckel syndrome, AT-like disorder, Nijmegen breakage syndrome, Bloom syndrome, FA, and breast and ovarian cancers respectively. Interestingly, RAD51 paralog mutations are reported in patients with FA-like disorder and various types of cancers including breast and ovarian cancers. Mono-allelic germline mutations in all RAD51 paralogs are reported to cause cancer in addition to the reported cases of FA-like disorder with bi-allelic germline mutations in RAD51C and XRCC2. In accordance, the last section of the chapter has been dedicated to describe the genetics of breast and ovarian cancers and the known functions of tumor suppressors such as BRCA1, BRCA2 and RAD51 paralogs in the protection of genome. Despite the identification of five RAD51 paralogs nearly two decades ago, the molecular mechanism(s) by which RAD51 paralogs regulate HR and genome maintenance remain obscure. To gain insights into the molecular mechanisms of RAD51 paralogs in DNA damage responses and their link with genetic diseases and cancer, the following objectives were laid for my PhD thesis: 1) To understand the functional role of RAD51 paralog RAD51C in FA pathway of ICL repair and DNA damage signalling. 2) To dissect the ATM/ATR mediated targeting of RAD51 paralog XRCC3 in the repair of DSBs and intra S-phase checkpoint. 3) To uncover the replication restart pathway after transient replication pause and the involvement of distinct complexes of RAD51 paralogs in the protection of replication forks. 4) To design photoinducible ICL agent that can be activated by visible light for targeted cancer therapy. Chapter II: Distinct roles of FANCO/RAD51C protein in DNA damage signaling and repair: Implications for Fanconi anemia and breast cancer susceptibility RAD51C, a RAD51 paralog has been implicated in HR. However, the underlying mechanism by which RAD51C regulates HR mediated DNA repair is elusive. In 2010, a study identified biallelic mutation in RAD51C leading to FA-like disorder, whereas a second study reported monoallelic mutations in RAD51C associated with increased risk of breast and ovarian cancers. However, the role of RAD51C in the FA pathway of DNA cross-link repair and as a tumor suppressor remained obscure. To understand the role of RAD51C in FA pathway of ICL repair and DNA damage response, we employed genetic, biochemical and cell biological approaches to dissect out the functions of RAD51C in genome maintenance. In our study, we observed that RAD51C deficiency leads to ICL sensitivity, chromatid-type errors, and G2/M accumulation, which are hallmarks of the FA phenotype. We found that RAD51C is dispensable for ICL unhooking and FANCD2 monoubiquitination but is essential for HR, confirming the downstream role of RAD51C in ICL repair. Furthermore, we demonstrated that RAD51C plays a vital role in the HR-mediated repair of DSBs associated with replication. Finally, we showed that RAD51C participates in ICL and DSB induced DNA damage signaling and controls intra-S-phase checkpoint through CHK2 activation. Our analyses with pathological mutants of RAD51C displayed that RAD51C regulates HR and DNA damage signaling distinctly. Together, these results unravel the critical role of RAD51C in the FA pathway of ICL repair and as a tumor suppressor. Chapter III: ATM-and ATR-mediated phosphorylation of XRCC3 regulates DNA double-strand break-induced checkpoint activation and repair The RAD51 paralogs XRCC3 and RAD51C have been implicated in HR and DNA damage responses, but the molecular mechanism of their participation in these pathways remained obscured. In our study, we showed that an SQ motif serine 225 in XRCC3 is phosphorylated by ATR kinase in an ATM signaling pathway. We found that RAD51C in CX3 complex but not in BCDX2 complex is essential for XRCC3 phosphorylation, and this modification follows end resection and is specific to S and G2 phases. XRCC3 phosphorylation was found to be required for chromatin loading and stabilization of RAD51 and HR-mediated repair of DSBs. Notably, in response to DSBs, XRCC3 participates in the intra-S-phase checkpoint following its phosphorylation and in the G2/M checkpoint independently of its phosphorylation. Strikingly, we found that XRCC3 distinctly regulates recovery of stalled and collapsed replication forks such that phosphorylation was required for the HR-mediated recovery of collapsed replication forks but is dispensable for the recovery of stalled replication forks. Together, our findings suggest that XRCC3 is a new player in the ATM/ATR-induced DNA damage responses to control checkpoint and HR-mediated repair. Chapter IV: RAD51 paralogs protect stalled forks and mediate replication restart in an FA-BRCA independent manner Mammalian RAD51 paralogs RAD51 B, C, D, XRCC2 and XRCC3 are critical for genome maintenance. To understand the crucial roles of RAD51 paralogs during spontaneously arising DNA damage, we have studied the RAD51 paralogs assembly during replication and examined the replication fork stability and its restart. We found that RAD51 paralogs are enriched onto the S-phase chromatin spontaneously. Interestingly, the number of 53BP1 nuclear bodies in G1-phase and micro-nucleation which serve as markers for under replicated lesions increases after genetic ablation of RAD51C, XRCC2 and XRCC3. Furthermore, we showed that RAD51 paralogs are specifically enriched at two major fragile sites FRA3B and FRA16D after replication fork stalling. We found that all five RAD51 paralogs bind to nascent DNA strands after replication fork stalling and protect the fork. Nascent replication tracts created before fork stalling with hydroxyurea degrade in the absence of RAD51 paralogs but remain stable in wild-type cells. This function was dependent on ATP binding at the walker A motif of RAD51 paralogs. Our results also suggested that RAD51 paralogs assemble into BCDX2 complex to prevent generation of DSBs at stalled replication forks, thereby safeguarding the pre-assembled replisome from the action of nucleases. Strikingly, we showed that RAD51C and XRCC3 in complex with FANCM promote the restart of stalled replication forks in an ATP hydrolysis dependent manner. Moreover, RAD51C R258H mutation that was identified in FA-like disorder abrogates the interaction of RAD51C with FANCM and XRCC3, and prevents fork restart. Thus, assembly of RAD51 paralogs in different complexes prevents nucleolytic degradation of stalled replication forks and promotes restart to maintain genomic integrity. Chapter V: Trans-dichlorooxovandium(IV) complex as a potent photoinducible DNA interstrand crosslinker for targeted cancer therapy Although DNA ICL agents such as MMC, cisplatin and psoralen are known to serve as anticancer drugs, these agents affect normal cells as well. Moreover, tumor resistance to these agents has been reported. We have designed and synthesized a novel photoinducible DNA crosslinking agent (ICL-2) which is a derivative of oxovanadiumterpyridine complex with two chlorides in trans position. We found that ICL-2 can be activated by UV-A and visible light to enable DNA ICLs. ICL-2 efficiently activated FA pathway of ICL repair. Strikingly, photoinduction of ICL-2 induces prolonged activation of cell cycle checkpoint and high degree of cell death in FA pathway defective cells. Moreover, we showed that ICL-2 specifically targets cells that express pathological RAD51C mutants. Our findings suggest that ICL-2 can be potentially used for targeted cancer therapy in patients with gene mutations in FA and HR pathway.

Les défauts dans la réparation des cassures double-brin de l'ADN (DSBs) peuvent avoir d'importantes conséquences pouvant entrainer une instabilité génomique et conduire à la mort cellulaire ou au développement de cancers. Dans la plupart des cellules mammifères, le mécanisme de Jonction des Extrémités Non Homologues (NHEJ) est le principal mécanisme de réparation des DSBs. L'ADN Ligase IV (LigIV) est une protéine unique dans sa capacité à promouvoir la NHEJ classique. Elle s'associe avec deux autres protéines structuralement similaires, XRCC4 et XLF (ou Cernunnos). LigIV interagit directement avec XRCC4 pour former un complexe stable, tandis que l'interaction entre XLF et ce complexe est médiée par XRCC4. XLF stimule fortement l'activité de ligation du complexe LigIV/XRCC4 par un mécanisme encore indéterminé. Récemment, un rôle structurel non catalytique a été attribué à LigIV (Cottarel et al., 2013). Dans le travail de thèse présenté ici, nous avons reconstitué l'étape de ligation de la NHEJ en utilisant des protéines recombinantes produites dans des bactéries afin d’une part, d'explorer les bases moléculaires du rôle structural de LigIV, d’autre part de comprendre le mécanisme par lequel XLF stimule le complexe de ligation, et enfin de mieux comprendre comment ces trois protéines coopèrent au cours de la NHEJ. Nos analyses biochimiques suggèrent que XLF via son interaction avec XRCC4 lié à LigIV, pourrait induire un changement conformationnel dans la LigIV. Ce réarrangement de la ligase exposerait son interface de liaison à l'ADN ce qui lui permettrait alors de ponter deux molécules indépendantes d'ADN, une capacité indépendante de l'activité catalytique de LigIV. / Failure to repair DNA double-strand breaks (DSBs) may have deleterious consequences inducing genomic instability and even cell death. In most mammalian cells, Non-Homologous End Joining (NHEJ) is a prominent DSB repair pathway. DNA ligase IV (LigIV) is unique in its ability to promote classical NHEJ. It associates with two structurally related proteins called XRCC4 and XLF (aka Cernunnos). LigIV directly interacts with XRCC4 forming a stable complex while the XLF interaction with this complex is mediated by XRCC4. XLF strongly stimulates the ligation activity of the LigIV/XRCC4 complex by an unknown mechanism. Recently, a structural noncatalytic role of LigIV has been uncovered (Cottarel et al., 2013). Here, we have reconstituted the end joining ligation step using recombinant proteins produced in bacteria to explore not only the molecular basis for the structural role of LigIV, but also to understand the mechanism by which XLF stimulates the ligation complex, and how these three proteins work together during NHEJ. Our biochemical analysis suggests that XLF, through interactions with LigIV/XRCC4 complex, could induce a conformational change in LigIV. Rearrangement of the LigIV would expose its DNA binding interface that is able to bridge two independent DNA molecules. This bridging ability is fully independent of LigIV’s catalytic activity. We have mutated this interface in order to attempt to disrupt the newly identified DNA bridging ability. In vitro analysis of this LigIV mutant will be presented as well as a preliminary in vivo analysis.