Orientador: Jose Luiz Pereira / Tese (doutorado) - Universidade Estadual de Campinas, Faculdade de Engenharia de Alimentos / Made available in DSpace on 2018-08-05T16:44:43Z (GMT). No. of bitstreams: 1 Maistro_LilianeCorrea_D.pdf: 46681351 bytes, checksum: ad9a87ef59bfce7cfb07b758fe4a075f (MD5) Previous issue date: 2006 / Resumo: O resumo poderá ser visualizado no texto completo da tese digital / Abstract: The abstract is available with the full electronic document / Doutorado / Doutor em Ciência de Alimentos

Poaceae (or Gramineae) belong to the grass family and is one of the largest families among flowering plants on land. They include some of the most important cereal crops such as rice (Oryza sativa), barley (Hordeum vulgare), wheat (Triticum aestivum), maize (Zea mays), and sorghum (Sorghum bicolor). The characteristic bushy appearance of grass plants, including cereal crops, is formed by the activities of axillary meristems (AMs) generated in the leaf axil. These give rise to tillers from the basal nodes which recapitulate secondary growth axis and AMs are formed during vegetative development. On transition to flowering the apical meristem transforming to an inflorescence meristem (IM) which produces branches from axillary meristem. These IM gives rise to branches that ultimately bear florets. Vegetative branching/tillering determines plant biomass and influences the number of inflorescences per plant. While inflorescence branching determines the number of florets and hence seeds. Thus the overall activity of axillary meristems plays a key role in determining plant architecture during both vegetative and reproductive stages. In Arabidopsis, research on the plant specific transcription factor LEAFY (LFY) has pioneered our understanding of its regulatory functions during transition from vegetative to reproductive development and its role in specifying a floral meristem (FM) identity to the newly arising lateral meristems. In the FM LFY activates other FM genes and genes for floral organ patterning transcription factors. LFY is strongly expressed throughout the young floral meristems from the earliest stages of specification but is completely absent from the IM (Weigel et al., 1992). LFY expression can also be detected at low levels in the newly emerging leaf primordia during the vegetative phase, and these levels gradually increase until the floral transition (Blazquez et al., 1997; Hempel et al., 1997). In rice, the LFY ortholog-RFL/APO2 is expressed predominantly in very young branching panicles/ inflorescence meristems (Kyozuka et al., 1998; Prasad et al., 2003) while in the vegetative phase RFL is expressed at axils of leaves (Rao et al., 2008). In rice FMs expression is restricted to primordia of lodicules, stamens, carpels and ovules (Ikeda-Kawakatsu et al., 2012). Knockdown of RFL activity or loss of function mutants show delayed flowering and poor panicle branching with reduced number of florets and lower fertility (Rao et al., 2008, Ikeda-Kawakatsu et al., 2012). In some genotypes reduced vegetative axillary branching is also compromised (Rao et al., 2008). On the other hand RFL overexpression leads to the early flowering, attributing a role as an activator for the transition of vegetative meristems to inflorescence meristems (Rao et al., 2008). Thus, RFL shows a distinct developmental expression profile, has unique mutant phenotypes as compared to Arabidopsis LFY thus indicating a divergence in functions. We have used various functional genomics approaches to investigate regulatory networks controlledby RFL in the vegetative axillary meristems and in branching panicles with florets. These regulatory effects influence tillering and panicle branching, thus contributing to rice plant architecture. RFL functions in axillary meristem Vegetative AMs are secondary shoot meristems whose outgrowth determines plant architecture. In rice, AMs form tillers from basal nodes and mutants with altered tillering reveal that an interplay between transcription factors and the phytohormones - auxin, strigolactone underpins this process. We probed the relationship between RFL and other factors that control AM development. Our findings indicate that the derangements in AM development that occur on RFL knockdown arise from its early effects during specification of these meristems and also later effects during their outgrowth of AM as a tiller. Overall, the derailments of both steps of AM development lead to reduced tillering in plants with reduced RFL activity. Our studies on the gene expression status for key transcription factor genes, genes for strigolactone pathway and for auxin transporters gave an insight on the interplay between RFL, LAX1 and strigolactone signalling. Expression levels of LAX1 and CUC genes, that encode transcription factors with AM specification functions, were modulated upon RFL knockdown and on induction of RFL:ΔGR fusion protein. Thus our findings imply a likely, direct activating role for RFL in AM development that acts in part, through attaining appropriate LAX1 expression levels. Our data place meristem specification transcription factors LAX1 and CUC downstream to RFL. Arabidopsis LFY has a predominant role in conferring floral meristem (FM) identity (Weigel et al., 1992; Wagner, 2009; Irish, 2010; Moyroud et al., 2010). Its functions in axillary meristems were not known until recently. The latter functions were uncovered with the new LFYHARA allele with only partial defects in floral meristem identity (Chahtane et al., 2013). This mutant allele showed LFY can promote growth of vegetative AMs through its direct target REGULATOR OF AXILLARY MERISTEMS1 (RAX1), a R2R3 myb domain factor (Chahtane et al., 2013). These functions for Arabidopsis LFY and RAX1 in AMs development are parallel to and redundant with the pathway regulated by LATERAL SUPPRESSOR (LAS) and REGULATOR OF AXILLARY MERISTEM FORMATION1 (ROX1) (Yang et al., 2012; Greb et al., 2003). Interestingly, ROX1 is orthologous to rice LAX1 and our data show LAX1 expression levels in rice panicles and in culms with vegetative AMs is dependent on the expression status of RFL. Thus, we speculate that as compared to Arabidopsis AM development, in rice the LFY-dependent and LFY-independent regulatory pathways for AMs development are closely linked. In Arabidopsis, CUC2 and CUC3 genes in addition to their role in shoot meristem formation and organ separation play a role in AM development possibly by defining a boundary for the emerging AM. These functions for the Arabidopsis CUC genes are routed through their effects on LAS and also by mechanisms independent of LAS (Hibara et al., 2006; Raman et al., 2008). These data show modulation in RFL activity using the inducible RFL:∆GR protein leads to corresponding expression changes in CUC1/CUC2 and CUC3 genes expression in culm tissues. Thus, during rice AM development the meristem functions of RFL and CUC genes are related. Consequent to specification of AM the buds are kept dormant. Bud outgrowth is influenced by auxin and strigolactone signalling pathways. We investigated the transcript levels, in rice culms of genes involved in strigolactone biosynthesis and perception and found the strigolactone biosynthesis gene D10 and hormone perception gene are significantly upregulated in RFL knockdown plants. Further, bioassays were done for strigolactone levels, where we used arbuscular mycorrhiza colonization assay as an indicator for strigolactone levels in wild type plants and in RFL knockdown plants. These data validate higher strigolactone signalling in RFL knockdown plants. To probe the relationship between RFL and the strigolactone pathway we created plants knocked down for both RFL and D3. For comparison of the tillering phenotype of these double knockdown plants we created plants with D3 knockdown alone. We observed reduced tillering in plants with knockdown of both RFL and D3 as compared to the tiller number in plants with knockdown of D3 alone. These data suggest that RFL acts upstream to D3 of control bud outgrowth. As effects of strigolactones are influenced by auxin transport we studied expression of OsPIN1 and OsPIN3 in RFL knockdown plants. Their reduced expression was correlated with auxin deficiency phenotypes of the roots in RFL knockdown plants. These data in conjunction with observations on OsPIN3 the gene expression modulation by the induction of RFL:∆GR allow us to speculate on a relationship between RFL, auxin transport and strigolactones with regard to bud outgrowth. We propose that the low tillering phenotype of RFL knockdown plants arises from weakened PATS, consequent to low levels of PIN1 and PIN3, coupled with moderate increase in strigolactones. Taken together, our findings suggest functions for RFL during AM specification and tiller bud outgrowth. RFL functions in panicle branching Prior studies on phenotypes of RFL knockdown or loss of function mutants suggested roles for RFL in transition to flowering, inflorescence meristem development, emergence of lateral organs and floral organ development (Rao et al., 2008; Ikeda-Kawakatsu et al., 2012). It has been speculated that RFL acts to suppress the transition from inflorescence meristem to floral meristem through its interaction with APO1 (Ikeda-Kawakatsu et al., 2012). The downstream genes regulated by RFL in these processes have not yet been elucidated. To identify direct targets of RFL in developing panicles we adopted ChIP-seq coupled with studies on gene expression modulation on induction of RFL. For the former we raised polyclonal anti-sera and chromatin from branching panicles with few florets. For gene expression modulation studies, we created transgenics with a T-DNA construct where an artificial miRNA against 3’UTR specifically knocked endogenous RFL and the same T-DNA had a second expression cassette for generation of a chemically inducible RFL-ΔGR protein that is not targeted by amiR RFL. Our preliminary ChIP-seq data in the wild type panicle tissues hints that RFL binds to hundreds of loci across the genome thus providing first glimpse of direct targets of RFL in these tissues. These data, while preliminary, were manually curated to identify likely targets that function in flowering, we summarize here some key findings. Our study indicates a role of RFL in flowering transition by activating genes like OsSPL14 and OsPRMT6a. Recent studies indicate that OsSPL14 directly binds to the promoter of OsMADS56 or FTL1, the rice homologs of SOC1 and FT to promote flowering (Lu et al., 2013). As RFL knockdown plants show highly reduced expression of OsMADS50/SOC1 and for RFT1 (Rao et al., 2008), and we show here RFL can bind and induce OsSPL14 expression we suggest the RFL¬OsSPL14 module can contribute to the transition of the SAM to flowering. Further, OsSPL14 in the young panicles directly activates DENSE AND ERECT PANICLE1 (DEP1) to control panicle length (Lu et al., 2013). Thus RFL-OsSPL14-DEP1 module could explain the role of RFL in controlling panicle architecture (Rao et al., 2008; Ikeda-Kawakatsu et al., 2012). Thus RFL plays a role in floral transition and this function is conserved across several LFY homologs. Our data ChIP-seq in the wild type tissue and gene expression modulation studies in transgenics also give molecular evidences for the role of RFL in suppression of floral fate. The direct binding of RFL to OsMADS17, OsYABBY3, OsMADS58 and HD-ZIP-IV loci and the changes in their transcript levels on induction of RFL support this hypothesis. Once the transition from SAM to FM takes place, we speculate RFL represses the conversion of inflorescence branch meristems to floral fate by negatively regulating OsYABBY3, HD-ZIP class IV and OsMADS17 that can promote differentiation. These hypotheses indicate a diverged function for RFL in floral fate repression. Arabidopsis LFY is known to activate the expression of AGAMOUS (AG), whose orthologs in rice are OsMADS3 and OsMADS58. Our studies confirm conservation with regard to RFL binding to cis elements at OsMADS58 locus that is homologous to Arabidopsis AG. But importantly we show altered consequences of this binding on gene expression. We find RFL can suppress the expression of OsMADS58 which we speculate can promote a meristematic fate. Further, we also present the abnormal upregulation of floral organ fate genes on RFL downregulation. These data too indicate functions of RFL, are in part, distinct from the role of Arabidopsis LFY where it works in promoting floral meristem specification and development. These inferences are supported by our data that rice gene homologs for AP1, AP3 and SEP3 are not directly regulated by RFL, unlike their direct regulation by Arabidopsis LFY during flower development. We also report the expression levels of LAX1, FZP, OsIDS1 and OsMADS34 genes involved in meristem phase change and IM branching are RFL dependent. This is consistent with its role in the suppression of determinacy, thereby extending the IM activity for branch formation. But as yet we do not know if these effects are direct. Together, our data report direct targets of RFL that contribute to its functions in meristem regulation, flowering transition, and suppression of floral organ development. Overall, our preliminary data on RFL chromatin occupancy combined with our detailed studies on the modulation of gene expression provides evidence for targets and pathways unique to the rice RFL during inflorescence development. Comparative analysis of genes downstream to RFL in vegetative tillers Vs panicles Tillers and panicle branches arise from the axillary meristems at vegetative and reproductive stages, respectively, of a rice plant and overall contribute to the plant architecture. Some regulatory factors control branching in both these tissues - for example, MOC1 and LAX1. Mutants at these loci affect tillers and panicle branch development thus indicating common mechanisms control lateral branch primordia development (Li et al., 2003; Komatsu et al., 2003; Oikawa and Kyozuka, 2009). Knockdown of RFL activity or loss-of-function mutants cause significantly reduced panicle branching and in few instances, reduction in vegetative axillary branching (Rao et al., 2008; Ikeda- Kawakatsu et al., 2012). We took up the global expression profiling of RFL knockdown plants compared to wild type plants in the axillary meristem and branching panicle tissue. These data provide a useful list of potential targets of RFL in axillary meristem and branching panicle tissue. The comparative analysis of the genes affected in the two tissues indicates only a subset of genes is affected by RFL in both the vegetative axillary meristems and branching panicle. These genes include transcription factors (OsSPL14, Zn finger domain protein, and bHLH domain protein), hormone signalling molecules (GA2 ox9) and cell signalling (LRR protein) as a set of genes activated by RFL in both tissues. On the other hand, these comparative expression profiling studies also show distinct set of genes deregulated by RFL knockdown in these two tissues therefore implicating RFL functions have a tissue-specific context. The genes deregulated only in axillary meristem tissue only include D3- involved in the perception of strigolactone, OsMADS34 speculated to have a role in floral transition and RCN1 involved in transition to flowering. On the other hand, the genes – CUC1, OsMADS3, OsMADS58 involved in organ development and floral meristem determination were found to be deregulated only in panicle tissues of RFL knockdown plants. These data point towards presence of distinct mechanisms for the development of AMs as tillers versus the development of panicle axillary as rachis branches. Overall, these data implicate genes involved in transition to flowering, axillary meristem development and floral meristem development are controlled by RFL in different meristems to thereby control plant architecture and transition to flowering.

Aphthona spp. flea beetles were released in the Little Missouri National Grasslands (LMNG) in western North Dakota in 1999 to control leafy spurge (Euphorbia esula L.). The changes in soil seed bank composition and leafy spurge density were evaluated on two ecological sites five (2004) and ten years (2009) after Aphthona spp. release to monitor the effectiveness of the insects on weed control and associated change in plant communities. In 2009, leafy spurge stem density averaged 2 and 9 stems m-2 in the loamy overflow and loamy sites, respectively, compared to 110 and 78 stems m-2, respectively, in 1999 and 7 and 10 stems m-2, respectively, in 2004. Leafy spurge constituted nearly 67% of the loamy overflow seed bank in 1999 compared to 17% in 2004 and 2% in 2009. In the loamy seedbank, the weed represented nearly 70% in 1999 compared to approximately 11% in 2004 and 15% in 2009. As leafy spurge was reduced, native species diversity and seed count increased ten years following Aphthona spp. release. High-seral species represented 17% of the loamy overflow seedbank in 2009, an increase from 5% in 1999. However, Kentucky bluegrass, a non-target weedy species, increased over 250% in the loamy overflow seedbank from 2004 to 2009. The reestablishment of native plant species has often been slow in areas where leafy spurge was controlled using Aphthona spp. A bioassay was completed to evaluate native grass establishment when grown in soil from Aphthona spp. release and non-release sites throughout North Dakota. Native grass production was not affected when grown in soil collected from established Aphthona spp. sites (1.5 g per pot) compared to soil without insects (1.6 g per pot). The cause of reduced native grass production in sites with Aphthono spp. previously observed is unknown but may have been due to a chemical inhibition caused by the insects within the soil that no longer exists. The native warm-season switchgrass (Ponicum virgotum L.) may be an alternative to corn for efficient biofuel production; however, control of cool-season grassy weeds has been a problem in switchgrass production. Various herbicides were evaluated for smooth bromegrass (Bromus inermis Leyss.) and quackgrass [Elymus repens (L.) Gould] control in an established switchgrass stand near Streeter, ND and a weed-infested field in Fargo, ND. Switchgrass yield was higher than the control 14 mo after treatment (MAT) when aminocyclopyrachlor or sulfometuron were applied early in the growing season, but no treatment provided satisfactory long-term grassy weed control. Herbicides were reevaluated at increased rates for smooth bromegrass or quackgrass control in Fargo. Sulfometuron provided 99% smooth bromegrass control when applied at 280 g ha-1 in the fall but injured other grass and forb species as well. Sulfometuron would likely be injurious to switchgrass and could not be used for biofuel production. Aminocyclopyrachlor did not injure other grass species but only reduced smooth bromegrass control by 76% when applied at 280 g ha-1 in the fall. No treatment provided satisfactory long-term quackgrass control.

No description available.

No description available.

No description available.

Denna rapport behandlar en fallstudie i ett kandidatexamensarbete som utförts tillsammans med en livsmedelsbutik i Stockholmsområdet och som grundar sig i intervjuer, platsbesök och vetenskapliga artiklar. Där livsmedelsbutiken har ett intresse av att implementera en odling i form av ett hydroponiskt system direkt i sin butik.  I fallstudien har det undersökts hur implementering av odling i butik genom ett samarbete med ett odlingsföretag skulle fungera och se ut för butiken. Studien har begränsats till två olika odlingsföretag i Sverige, som har varsitt koncept på hur odlingen kan implementeras, gemensamt för dem är att de använder vertikal odling i form av hydroponiska system. Där det ena företaget erbjuder vertikal odling i en odlingscontainer och det andra vertikal odling inne i ett växthus. Båda företagens olika odlingskoncept har redan implementerats i två andra livsmedelsbutiker inom samma koncern som livsmedelsbutiken i Stockholm befinner sig i.  Fallstudien har genomförts genom att först skapa en bred bakgrund genom litteratursökningar i olika databaser kring relevanta nyckelord för att sedan genomföra intervjuer med båda odlingsföretagen och livsmedelsbutikerna. Därefter har kunskap och svar från respondenterna i intervjuerna sammanställts och ett förslag har tagits fram om vilket odlingsföretag som lämpar sig bäst för livsmedelsbutikens ändamål.  Resultatet visar att möjligheterna och fördelarna vid en implementering av hydroponisk odling för livsmedelsbutiken i Stockholmsområdet att implementera hydroponisk odling är flera och överväger till största del de möjliga utmaningarna. Dessutom gynnas flera av hållbarhetsmålen till livsmedelsbutikens koncern genom implementering av en hydroponisk odling i butiken. Vidare gynnas även några av de Förenta Nationernas Globala mål och även livsmedelsbutikens egna hållbarhetsmål. / This report is the result and outcome of a bachelor's thesis project conducted during the spring of 2021. The report presents the performed case study of a grocery store, in the area of Stockholm, where the company is aiming to implement a hydroponic self-cultivation inside their grocery store. The work is based on conducting interviews and reviewing established scientific articles in the field.  In the case study, it has been investigated how a potential collaboration between the grocery store and a cultivation company can be established. The study was limited to investigating two cultivation companies active on the Swedish market. These two cultivation companies have different solutions of how the cultivation can be implemented on the store area, but both offer vertical hydroponic solutions. Further, both systems of the individual cultivation companies’ have been implemented in other grocery stores that can be used as reference for validation of data.  The literature review of existing publications were conducted by searching in different databases by using the keywords of this work, for the researcher to increase knowledge to create guides for the interviews and for creating the theoretical frame of reference. Thereafter, literature findings and answers from the interviewees were compiled, analyzed and discussed to make a proposition of which cultivation company is best suited for a potential collaboration, with regard to the grocery stores’ wishes of implementing a hydroponic solution.  The results show that several of the grocery stores’ sustainability goals would benefit from a potential implementation of a self-cultivation. Also, implementing a hydroponic farm on the store area would increase the grocery store’s contribution towards achieving the Sustainable Development Goals.

A high rate of micronutrient deficiencies persists in Africa with the most vulnerable groups being women and children. The Moringa oleifera tree has been identified to help alleviate malnutrition at household level because of its rich content of vitamin A in its plant form - beta-carotene, iron and vitamin C. The objectives of this study was to identify households that consumed Moringa, to identify households that required diet diversification through the use of a Household Dietary Diversity Score (HDDS) and to determine the acceptability of various dishes prepared from Moringa leaves as a possible contribution to the alleviation of malnutrition in resource poor communities. The dietary diversity score of the traditional Bapedi community is 4.7 and the results of the acceptability test of dishes prepared with Moringa indicated that Moringa could be recommended as an additional food ingredient to add micronutrient to the diet of Bapedi communities. / Agriculture and Environmental Sciences / M.A. (Human Ecology)

A high rate of micronutrient deficiencies persists in Africa with the most vulnerable groups being women and children. The Moringa oleifera tree has been identified to help alleviate malnutrition at household level because of its rich content of vitamin A in its plant form - beta-carotene, iron and vitamin C. The objectives of this study was to identify households that consumed Moringa, to identify households that required diet diversification through the use of a Household Dietary Diversity Score (HDDS) and to determine the acceptability of various dishes prepared from Moringa leaves as a possible contribution to the alleviation of malnutrition in resource poor communities. The dietary diversity score of the traditional Bapedi community is 4.7 and the results of the acceptability test of dishes prepared with Moringa indicated that Moringa could be recommended as an additional food ingredient to add micronutrient to the diet of Bapedi communities. / Agriculture and Environmental Sciences / M.A. (Human Ecology)

This degree thesis investigates the possibilities of producing food inside a container at Svalbard, using renewable energy and energy storage. The idea was to be able to place the container at remote places without the need of being connected to the grid. We chose Svalbard, where it is cold and the sun is shining 24 hours a day at summertime. In the winter the opposite occurs and the sun is absent from the sky. The work is divided into theoretical studies and results based on different calculations. Such as economical evaluations (LCOE), and simulations using the computer programs Matlab and PVsyst. We have investigated if solar power and wind power is suitable as energy sources. Options for storage were batteries, grid and hydrogen storage. Different cases with Photovoltaics- and wind power plants, with batteries or grid, were compared against each other. It is not possible to use the grid as storage. This resulted in different sizing of our cases, with no excess energy production. The result showed that a 5 kWp photvoltaic plant with dual axis tracking system, was the most profitable. The Pay off would be 14 years and the total profit 63 453 SEK. If it will become possible in the future to use the grid at Svalbard as storage, it will open up opportunites for bigger systems. This will lead to higher profit than with smaller ones. Our results show that it is now most profitable with solar power.