Determination of bio-material by using enzyme, fluorophore or metal-nanoparticles as markers is very important. Generally, gold-nanoparticles have been used frequently as marker for increasing the sensitivity in bio-chemical assay. In this research, gold-nanoparticles were used as marker for immunoassay, DNA sequence assay, and protein analysis. However, the size of gold-nanoparticles affects directly the results of electrochemical detection. For improving the sensitivity of electrochemical method, enlargement of gold-nanoparticles was used in this study. By electroless deposition, Au will be deposited on the surface of gold-nanoparticles. The electrochemical response will thus be increased substantially. In immunoassay and DNA sequence assay, traditional 96-wells microtiter plate was used for immobilizing antibody or oligonucleotide, and the gold-nanoparticles were marked subsequently base on the immunoreaction or protein reaction of streptavidin and biotin. After gold-nanoparticles were enlarged, they were dissolved and transferred to an electrochemical cell for square wave stripping voltammetry¡]SWSV¡^analysis. Under optimal experimental condition, dynamic range of 1 ~ 500 pg/mL and 0.52 ~ 1300 aM were found respectively for RIgG and Target DNA analysis, and a good linear relationship¡]R2 = 0.9975 and 0.9982¡^. The relative standard deviation¡]R.S.D.¡^ of blank were 2.8 % and 2.4 %¡]n = 11¡^for immunoassay and DNA assay, respectively. And the variance was 2.4 %¡]n = 9¡^and 2.4 %¡]n = 12¡^for immunoassay and DNA assay, respectively. The detection limit¡]based on S/N = 3¡^of RIgG and DNA were 0.25 pg/mL and 0.52 aM, respectively. They are very competitive compared with similar results reported in the literature. Additional, a gold nanoelectrode ensemble¡]GNEE¡^coupled microchip system was developed for bio-electrochemical analysis. Due to the difference in mobility of urea and urease were mixed and allowed the enzymatic reaction to proceed in microchannel. The enzymatic product NH4+ was determined by the coupled GNEE at the outlet of the channel. Another experiment of streptavidin conjugated gold-nanoparticles¡]streptavidin-Au¡^, reductant and gold-ion¡]Au3+¡^solution was be applied here, too. The product, NH4+ or Au3+ was passed through downstream of microchannel and detected by GNEE of electrochemical system. Satisfactory linear relationship¡]R2 = 0.9778 and 0.9657¡^were found from 0.1 mM to 50 mM for NH4+ and urea in the range of 0.02 mM to 5.0 mM, respectively. The other satisfactory linear relationship¡]R2 = 0.9842 and 0.9507¡^ were found between 3.75 mg/mL and 3.75 g/mL for Au3+ and streptavidin-Au in the range of 0.2 ng/mL to 100 ng/mL, respectively. Variances of 2.5 %¡]n = 6¡^was found for analysis of with the microchip system.

Microfluidics has seen an explosion in growth in the past few years, providing researchers with new and exciting lab-on-chip platforms with which to perform a wide variety of biological and biochemical experiments. In this work, a volume quantification tool is developed, demonstrating the ability to measure the volume of individual cells at high resolution and while enabling microfluidic sample manipulations. Care is taken to maximise measurement sensitivity, range and accuracy, though novel use of buoyancy and dynamically tunable microchannels. This first demonstration of a microfluidic tunable volume sensor meant volume sensing over a much wider range, enabling the detection of ̴ 1 µm3 E.coli that would otherwise go undetected. Software was written that enables pressure-driven flow control on the scale of individual cells, which is used to great success in (a) sorting cells based on size measurement and (b) monitoring the growth of cells. While there are a number of macroscopic techniques capable of sorting cells, microscopic lab-on-chip equivalents have only recently started to emerge. In this work, a label-free, volume sensor operating at high resolution is used in conjunction with pressure-driven flow control to actively extract particle/cell subpopulations. Next, a microfluidic growth monitoring device is demonstrated, whereby a cell is flowed back and forth through a volume sensor. The integration of sieve valves allows cell media to be quickly exchanged. The combination of dynamic trapping and rapid media exchange is an important technological contribution to the field, one that opens the door to studies focusing on cell volumetric response to drugs and environmental stimuli. This technology was designed and fabricated in-house using soft lithography techniques readily available in most biotechnology labs. The main thesis body contains four scientific articles that detail this work (Chapters 2-5), all published in peer-reviewed scientific journals. These are preceded by an introductory chapter which provides an overview to the theory underlying this work, in particular the non-intuitive physics at the microscale and the Coulter principle.

Este estudo tem por objetivo o desenvolvimento de uma metodologia de fabricação de sistemas Lab On Chip, úteis no estudo de processos celulares, a partir da adaptação de tecnologias próprias da microeletrônica. Foram exploradas todas as etapas envolvidas na fabricação de sistemas Lab On Chip em Poli-Di-Metil-Siloxano e desenvolvidos protocolos de fabricação de moldes, técnicas de moldagem e processos de ativação de PDMS com plasma de oxigênio para sua solda química sobre diferentes materiais, obtendo uniões irreversíveis que permitem a integração com outras tecnologias como a microeletrônica em silício e o encapsulamento com cerâmica verde, completando uma metodologia que permite a prototipagem de dispositivos micro-fluídicos de multicamadas com um nível de sofisticação comparável ao estado da arte. Foi desenvolvido o protótipo de um equipamento ótico para litografia por projeção que permite a fabricação de máscaras óticas com resolução de 5 m e oferece a possibilidade de litografia em escala de cinzas para gerar canais e estruturas com relevos arbitrários. Foram adicionalmente abordados três problemas de biofísica celular, para os quais foram propostos novos dispositivos para separação de células móveis de acordo às suas velocidades lineares, dispositivos para crescimento confinado de bactérias e dispositivos para manipulação da curvatura de membranas celulares. / The objective of this study is the development of a methodology for the fabrication of Lab On Chip systems, useful for the analysis of cellular processes, through the adaptation of technologies from microelectronics. All the steps involved with the fabrication of Lab on Chip system in Poly-Di-Methil-Siloxane (PDMS) were explored, developing protocols for mold fabrication, molding techniques and processes for oxygen plasma activation of PDMS for its bonding to different materials, achieving irreversible bonds that enable the integration with other technologies such as silicon microelectronics and green tape packaging. All this techniques constitute a methodology that allows the prototyping of multilayer microfluidic devices comparable with state of the art devices. It was developed the prototype of optical equipment for projection lithography capable of mask fabrication with 5 m resolution, and which offers also the capability of gray scale lithography for the generation of free form microchannels. Additionally three different problems in cellular biophysics where boarded, proposing new devices for the separation of motile cells according to their linear speeds in liquids, new devices for constrained bacterial growth and for curvature manipulation of cell membranes.

Microfluidics has seen an explosion in growth in the past few years, providing researchers with new and exciting lab-on-chip platforms with which to perform a wide variety of biological and biochemical experiments. In this work, a volume quantification tool is developed, demonstrating the ability to measure the volume of individual cells at high resolution and while enabling microfluidic sample manipulations. Care is taken to maximise measurement sensitivity, range and accuracy, though novel use of buoyancy and dynamically tunable microchannels. This first demonstration of a microfluidic tunable volume sensor meant volume sensing over a much wider range, enabling the detection of ̴ 1 µm3 E.coli that would otherwise go undetected. Software was written that enables pressure-driven flow control on the scale of individual cells, which is used to great success in (a) sorting cells based on size measurement and (b) monitoring the growth of cells. While there are a number of macroscopic techniques capable of sorting cells, microscopic lab-on-chip equivalents have only recently started to emerge. In this work, a label-free, volume sensor operating at high resolution is used in conjunction with pressure-driven flow control to actively extract particle/cell subpopulations. Next, a microfluidic growth monitoring device is demonstrated, whereby a cell is flowed back and forth through a volume sensor. The integration of sieve valves allows cell media to be quickly exchanged. The combination of dynamic trapping and rapid media exchange is an important technological contribution to the field, one that opens the door to studies focusing on cell volumetric response to drugs and environmental stimuli. This technology was designed and fabricated in-house using soft lithography techniques readily available in most biotechnology labs. The main thesis body contains four scientific articles that detail this work (Chapters 2-5), all published in peer-reviewed scientific journals. These are preceded by an introductory chapter which provides an overview to the theory underlying this work, in particular the non-intuitive physics at the microscale and the Coulter principle.

No description available.

Much of recent progress in medical research and diagnostics has been enabled through the advances in molecular analysis technologies, which now permit the detection and analysis of single molecules with high sensitivity and specificity. Assay sensitivity is fundamentally limited by the efficiency of the detection method used for read-out. Inefficient detection systems are usually compensated for by molecular amplification at the cost of elevated assay complexity. This thesis presents microfluidic automation and digital quantification of targeted nucleic acid detection methods based on padlock and selector probes and rolling circle amplification (RCA). In paper I, the highly sensitive, yet complex circle-to-circle amplification assay was automated on a digital microfluidic chip. In paper II, a new RCA product (RCP) sensing principle was developed based on resistive pulse sensing that allows label free digital RCP quantification. In paper III, a microfluidic chip for spatial RCP enrichment was developed, which enables the detection of RCPs with an unprecedented efficiency and allows for deeper analysis of enriched RCPs through next generation sequencing chemistry. In paper IV, a smart phone was converted into a multiplex fluorescent imaging device that enables imaging and quantification of RCPs on slides as well as within cells and tissues. KRAS point mutations were detected (i) in situ, directly in tumor tissue, and (ii) by targeted sequencing of extracted tumor DNA, imaged with the smart phone RCP imager. This thesis describes the building blocks required for the development of highly sensitive low-cost RCA-based nucleic acid analysis devices for utilization in research and diagnostics.

1-Microevaporation - Microfluidics is the branch of fluid mechanics dedicated to the study of flows in the channel withdimensions between 1 micron and 100 micron. The object of this chapter is to illustrate the basicprinciples and possible applications of microfluidic chip, called microevaporator. In the first part ofthe chapter, we present a detailed description of the physics of microevaporators using analyticalarguments, and describe some applications. In the second part of the chapter, we present theexperimental protocol of engineering of micro evaporator and different type of microfluidics device.2- On-chip microspectroscopy - The object of this chapter is to illustrate a method to measure absorption spectra during theprocess of growth of our materials in our microfluidic tools. The aim is to make an opticalcharacterization of our micro materials and to carry-out a spatio-temporal study of kineticproperties of our dispersion under study. This instrumental chapter presents the theoretical basis !of the method we used.3-Role of colloidal stability in the growth of micromaterials - We used combined microspectroscopy and videomicroscopy to follow the nucleation and growth ofmaterials made of core-shell Ag@SiO2 NPs in micro evaporators.!We evidence that the growth is actually not always possible, and instead precipitation may occurduring the concentration process. This event is governed by the concentration of dispersion in thereservoir and we assume that its origin come from ionic species that are concentrated all togetherwith the NPs and may alter the colloidal stability en route towards high concentration. 4-Microfluidic-induced growth and shape-up of three-dimensional extended arrays of denselypacked nano particles - In this chapter I present in details microfluidic evaporation experiments to engineer various denselypacked 3D arrays of NPs.5-Bulk metamaterials assembled by microfluidic evaporation - In this chapter I introduced the technique we used (microspot ellipsometry) in close collaborationswith V.Kravets and A.Grigorenko(University of Manchester) and with A.Aradian, P.Barois, A.Baron,K.Ehrhardt(CRPP, Pessac) to characterized the solids made of densely packed NPs. I describe theconstraints that emerge from the coupling between the small size of our materials and the opticalrequirements, the analysis and interpretation of the ellipsometry experiments show that for thematerial with high volume fraction of metal exists the strong electrical coupling between the NPsand the materials display an extremely high refraction index in the near infra-red regime.

L’objectif de ce travail porte sur l’étude et la réalisation de résonateurs optiques à état liquide en microfluidique digitale. Les gouttes sphériques constituent des résonateurs à mode de galerie, dans lesquels la lumière peut être piégée par réflexion totale interne. A l’échelle microscopique, elles exhibent des propriétés optiques remarquables. Leurs facteurs de qualité très élevés en font notamment des objets propices à l’étude de phénomènes optiques non linéaires, tel l’effet laser, et leur confèrent un potentiel certain en spectroscopie. Par ailleurs, la microfluidique digitale, qui a trait aux systèmes multiphasiques dans des microcanaux artificiels, offre une grande liberté de manipulation des microgouttes : génération au kHz, transport, encapsulation, fusion, division, stockage, triage… Aussi, pour les laboratoires-sur-puce, le développement de ces microgouttes en cavités résonantes constitue une opportunité d’intégrer des outils d’analyse optique capables de sonder des échantillons allant du picolitre au nanolitre.Après un exposé des propriétés optiques des résonateurs à modes de galerie, ce mémoire rapporte les travaux réalisés. Une présentation des méthodes de microfabrication et du montage expérimental précède l’étude de la génération de cavités optiques liquides en dynamique. Ces cavités résonantes sont ensuite appliquées aux sources lasers microfluidiques. En particulier, un effet laser a été mis en évidence dans des microgouttes sphériques d’éthylène glycol contenant de la rhodamine 6G. Enfin, une ouverture sur des systèmes couplant microgouttes et cavités Fabry-Perot présente d’autres perspectives telles que l’analyse de gouttes passives en intravité laser ou bien la commutation rapide de la longueur d’onde d’émission de lasers microfluidiques monomodes. / The purpose of this work is to study and realize liquid state optical resonators in digital microfluidics. Spherical droplets may behave as whispering gallery mode resonators, in which light is trapped by total internal reflections. At the microscopic scale, they exhibit outstanding optical properties. Their high quality factors make them attractive for studying non-linear optical phenomena, such as lasing, and for spectroscopy. In another field of research, digital microfluidics, that deals with multiphase fluid systems in artificial microchannels, also involves microdroplets. It offers a high degree of freedom in handling microdroplets: kHz generation, transport, encapsulation, fusion, division, stockpiling, sorting… Therefore, in lab-on-chip systems, turning microdroplets into resonant microcavities constitutes an opportunity for integrating optical analysis tools that can probe picoliter to nanoliter samples.After a review of the optical properties of whispering gallery mode resonators, this thesis reports the experimental results. A presentation of the methods of microfabrication and of the experimental bench top precedes the study of the dynamic generation of liquid optical microcavities. Then, these resonant cavities are applied to microfluidic laser sources. In particular, lasing effect has been demonstrated in spherical microdroplets of ethylene glycol and rhodamine 6G. Finally, an opening towards systems that combine microdroplets and Fabry-Perot cavities presents other perspectives such as the analysis of passive droplets in laser intacavity or the capability of fast switching the output wavelength of single mode microfluidic dye lasers.

Résumé confidentiel / Résumé confidentiel

Afin de réaliser des dispositifs en polymère à forte valeur ajoutée, l'industrie de la plasturgie s'intéresse depuis quelques années à la convergence possible entre les microtechnologies et les méthodes industrielles de mise en oeuvre des polymères (le thermoformage et la thermo-injection). Dans ce contexte, l'objectif de cette thèse est de démontrer l'intérêt d'une approche à base de microtamponnage pour l'intégration de capteurs à base métallique dans des circuits microfluidiques en thermoplastique réalisés par thermoformage. Pour ces matériaux, cette approche apparait plus pertinente en terme de production de masse qu'une approche de photolithographie classique. Nous avons choisi de démontrer ce concept en étudiant l'intégration d'un capteur de pH et d'un capteur de température dans un système microfluidique en copolymère d'oléfine cyclique (COC) réalisé par thermoformage. En effet, la mesure de ces paramètres physico-chimiques est extrêmement répandue dans différents domaines d'application allant de la chimie à la biologie et à la médecine. Pour le capteur de pH, nous avons développé une couche sensible au pH à base d'oxyde d'iridium (IrOx) électrodéposé sur or. L'influence de différents paramètres (solution d'électrodépôt, méthode d'électrodéposition, nature du substrat métallique et son mode de préparation) sur la réponse au pH de ces couches a été étudiée. Nous avons ainsi pu démonter qu'une approche par microtamponnage passive est adaptée à la préparation de capteurs de pH sur un substrat en COC/Au ayant une sensibilité de -72 mV/pH et une durée de vie de 1 an. Pour le capteur de température, la solution retenue est basée sur le principe d'une thermorésistance. Les capteurs ont été élaborés en utilisant une approche par microtamponnage actif avec croissance d'une couche de nickel (dont l'épaisseur varie entre 0,2 et 5 μm) par métallisation autocatalytique sur polyimide. La dérive des capteurs est actuellement trop importante pour une application pratique. Finalement, des résultats préliminaires d'intégration de ces capteurs dans un microsystème fluidique thermoformé sont présentés avec notamment une configuration originale de mesure différentielle du pH / The plastics industry has been interested for some years in the possible convergence between microtechnologies and conventional polymer manufacturing (hot embossing and injection molding). In this context, this thesis aims at demonstrating the potential of a process based on microcontact printing in order to integrate metal based sensors in thermoplastic microfluidic devices shaped by hot embossing. For the mass production of thermoplastic devices, this approach appears more relevant than conventional photolithography. We chose to demonstrate this concept by investigating the integration of both a pH sensor and a temperature sensor in a thermoformed Cyclo Olefin Copolymer (COC) microfluidic system. Indeed, the measurement of these physicochemical parameters are extremely widespread in different applicative areas ranging from chemistry tobiology and medicine. For the pH sensor, we developed a pH-sensitive layer based on electrodeposited iridium oxide (IrOx) on Au. The influence of various parameters (plating solution and method , nature of the metal substrate and its method of preparation) on the pH response of these layers was studied. We were able to demonstrate that microcontact printing based on a passive approach is suitable for the preparation of pH sensors on a COC substrate with a sensitivity of -72 mV/pH and a 1 year lifetime. As regards the temperature sensor, the solution was to design a thermistor. Sensors were implemented with an approach based on active microcontact printing followed by electroless deposition of nickel (thickness varies between 0,2 and 5 μm) on polyimide. The drift of these sensors is too large for practical application. Finally, preliminary results presenting the integrating of these sensors in a fluidic microsystem are reported using an original configuration based on differential measurement of pH