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  • About
  • The Global ETD Search service is a free service for researchers to find electronic theses and dissertations. This service is provided by the Networked Digital Library of Theses and Dissertations.
    Our metadata is collected from universities around the world. If you manage a university/consortium/country archive and want to be added, details can be found on the NDLTD website.
11

Comparação entre técnica cirúrgica convencional e minimamente invasiva no tratamento regenerativo de lesões de bifurcação utilizando osso anorgânico bovino e matriz derivada do esmalte / Comparison between conventional and minimally invasive surgical technique on regenerative treatment of furcation defects using an enamel matrix protein derivative combined with anorganic bovine bone

Túlio Bonna Pignaton 31 March 2014 (has links)
Objetivos: O objetivo deste estudo clínico controlado e randomizado de boca-dividida foi fazer uma comparação entre a técnica cirúrgica convencional (TCC) e a técnica cirúrgica minimamente invasiva (TCMI) no tratamento regenerativo de lesões de bifurcação classe II e III utilizando osso anorgânico bovino (OAB) e matriz derivada do esmalte (MDE). Materiais e Métodos: Foram selecionados 15 pacientes com lesões bilaterais de bifurcação. Os 15 pares de lesões de bifurcação foram designados e tratados aleatoriamente no grupo teste (TCMI), e as leões de bifurcação contralaterais no grupo controle (TCC). Ambos os grupos foram tratados com a associação de OAB e MDE. Os critérios primários de avaliação foram centrados na percepção dos pacientes com relação a dor, desconforto, edema, hematoma, hipersensibilidade radicular e interferência nas atividades diárias. Esses dados foram avaliados por uma escala milimétrica de 0 a 100 mm (Visual Analogue Scale - VAS), 7 dias após os procedimentos cirúrgicos. Os parâmetros clínicos e radiográficos (subtração radiográfica) foram os critérios secundários de avaliação. Os parâmetros clínicos considerados foram: profundidade de sondagem (PS); nível clínico de inserção vertical (NCIV); nível clínico de inserção horizontal do defeito (NCIH); e retração gengival (RG). As medidas foram realizadas antes dos procedimentos cirúrgicos e 6 meses após os mesmos. Resultados: A análise dos parâmetros centrados no paciente demonstrou que, com maior frequência, o grupo controle apresentou mais dor e desconforto, maior edema, hematoma, hipersensibilidade radicular e interferência nas atividades diárias quando comparado ao grupo teste, apesar de não apresentar diferença estatisticamente significativa (p > 0.05). Entretanto, pode-se afirmar que existe uma tendência estatística de o grupo teste apresentar menor dor (p = 0.679), desconforto (p = 0.679), hematoma (p = 0.567) e edema (p = 0.130) quando comparado ao grupo controle. Ambos os grupos apresentaram diferença estatisticamente significativa entre o baseline e após 6 meses no ganho do NCIH (análise intragrupo). Os parâmetros clínicos e radiográficos não apresentaram diferença estatisticamente significativa intergrupos no baseline e após 6 meses. Conclusão: Considerando os resultados obtidos com os parâmetros centrados no paciente e os dados clínicos, a técnica cirúrgica minimamente invasiva parece apresentar um potencial promissor. E deve ser indicada com o intuito de proporcionar maior conforto para os nossos pacientes. / Aim: The aim of this randomized, controlled, clinical study was to compare a conventional surgical technique (CST) and minimally invasive surgical technique (MIST) in the regenerative treatment of mandibular furcation defects. Materials and Methods: Fifteen patients with bilateral mandibular class II and III furcation defects were selected, treated and randomly assigned to the test group (MIST), and contralateral furcation defects were assigned to the control group (CST). Both groups were treated with the combination of anorganic bovine bone (ABB) and enamel matrix proteins (EMD), in the same day. The primary outcomes were patient-based outcomes (PBOs) regarding pain, discomfort, edema, hematoma, root hypersensitivity and daily activities interference. These data were recorded using a Visual Analogue Scale (VAS) 7 days after surgery. Secondary outcomes were assessed by clinical parameters and digital subtraction radiography, at baseline and 6 months after surgeries. The clinical parameters considered were: pocket probing depth (PPD), vertical clinical attachment level (VCAL), horizontal clinical attachment level (HCAL), and gingival recession (GR). Digital subtraction radiography was used to analyse radiographic density changes that occurred in the furcation area following treatment. Results: Patient-centered parameters evidenced more pain and discomfort, increased edema, hematoma, hypersensitivity and root interference in daily activities for control group. However, there was no statistically significant difference between the test and control groups (p > 0,05). Nevertheless, statistical data suggest that there are tendencies of CST causing more pain (p = 0.679), discomfort (p = 0.679), hematoma (p = 0.567) and edema (p = 0.130). Class II furcation defects presented a gain in HCAL after 6 months of 2.10 ± 2.09 mm and 1.90 ± 1.90 mm for control and test groups, respectively. No statistical significant differences were reached for PPD, GR and VCAL after 6 months. Digital subtraction radiography analysis revealed an increase in radiographic density after 6 months. Conclusion: Considering PBOs and clinical parameters outcomes, minimally invasive surgical technique appears to offer a promising potential. Both surgical techniques provided equivalent clinical outcomes however MIST may provide greater comfort to our patients.
12

The pro-inflammatory and calcification effects of DMP-1 on pulp fibroblasts. Implications for the prevention of dental pulp calcifc metamorphosis

Abd-Elmeguid, Ashraf A.E. Unknown Date
No description available.
13

Estudo do comportamento biomecânico e da expressão galectina-3 e comp, biomarcadores do turnover de tecidos articulares da sínfise púbica de camundongos durante a prenhez e pos-parto / Study of biomechanical behavior and expressiom galectin-3 and comp, biomarkers turnover of tissue joint of pubic symphysis of mice during pregnancy and postpartum

Silva, Monica Maria Moreira, 1960- 27 August 2018 (has links)
Orientadores: Paulo Pinto Joazeiro, Luiz Carlos Alves / Tese (doutorado) - Universidade Estadual de Campinas, Instituto de Biologia / Made available in DSpace on 2018-08-27T05:21:21Z (GMT). No. of bitstreams: 1 Silva_MonicaMariaMoreira_D.pdf: 3522039 bytes, checksum: c8adbfe076ccc79eaa19efeb2f0d8fe7 (MD5) Previous issue date: 2014 / Resumo: Em camundongos, a sínfise púbica (SP) é metabolicamente ativa durante a prenhez. As adaptações orquestradas por hormônios e a sobrecarga mecânica imposta na sínfise, que gradualmente dá lugar ao ligamento interpúbico (Lip) e ao seu "relaxamento" no final da prenhez permitem a passagem da prole pelo canal do parto. Tais modificações oferecem oportunidade para estudo de remodelação de tecidos semelhantes às que ocorrem nas disfunções e distopias do assoalho pélvico feminino. Estudaram-se características morfológicas, imunohistoquímica das proteínas Galectina-3(GAL3) e CartilageOligomericProtein Matrix (COMP) e o comportamento biomecânico, na SP de camundongos fêmeas adultas jovens, durante a primeira prenhez e após o parto por meio de técnicas histológicas convencionais, imunohistoquímica, microscopia de luz, eletrônica de transmissão e varredura. Nas análises da organização fibrilar utilizou-se transformada rápida de Fourier (FFT) e do comportamento biomecânico ensaio destrutivo de tração uniaxial em máquina de testes universal com velocidade constante e força progressiva nas SP/Lip de camundongos C57BL6 grupos: (NP-controle), 12, 15 e 19 dias (d) após a verificação do plug vaginal e no 30, 50 e 100dias após o parto (dpp). No ensaio de tração uniaxial, a força máxima necessária para o início da ruptura do tecido diminuiu no decorrer da prenhez, sendo o menor valor medido no dia do parto, aumentou a partir deste dia, e no 10dpp retornou a valores próximos aosdos animais NP. A energia total de ruptura (ETR) diminuiu no 12d e a partir de 15d aumentou até o 5dpp, no 10dpp, diminuiu porém se manteve menor que o NP. Na Imunolocalização das proteínas COMP e GAL3 foram detectadas em todos os grupos, com variações no tipo celular e na localização. A morfologia bicorne do útero de camundongos e o peso do útero com os filhotes alteram os estímulos mecânicos nos tecidos interpúbicos e contribuem para sua remodelação. No 3dpp, quando os estímulos mecânicos foram abruptamente retirados no parto, observaram-se organelas compostas por microtúbulos semelhante a cílio solitário não móvel, citado como organela mecanosensorial. O comportamento biomecânico dos tecidos interpúbicos durante a prenhez e após o parto foi coerente com a histoarquitetura destes e a imunolocalização das proteínas COMP e GAL-3, à medida que o comportamento biomecânico dos tecidos se modifica são indicativos que essas proteínas estão envolvidas no remodelamento de transições de elementos ósseos e ligamentares e fibrocatilaginosas durante a prenhez e após o parto. Este remodelamento que proporciona afastamento de ossos púbicos e a rápida recuperação que se inicia pós-parto, oferece suporte ao canal de parto de animais que possuem útero bicorne a exemplo do camundongo, morcego e cobaia / Abstract: In mice, the pubic symphysis (PS) is metabolically active during pregnancy. Adaptations orchestrated by hormones and mechanical overload that the symphysis goes through during this period, which gradually gives place to an interpubic ligament (IpL) and the relaxation at the end of pregnancy, allows the passage of offspring through the birth canal. Such changes provide an opportunity to study remodeling of tissues such as those that occur in disorders and dystopias of the female pelvic floor. We studied morphological, immunohistochemical analysis of galectin-3 (GAL3) and Cartilage Oligomeric Matrix Protein (COMP) proteins and the biomechanical behavior in young adult females PS mice during first pregnancy and postpartum (dpp) through conventional histological techniques, immunohistochemistry and light,transmition and scanning electron microscopies. In analyzes of fibrillar organization we used fast Fourier transform and the biomechanical behavior destructive tensile testing in a universal testing machine with constant speed and progressive force in the PS/IpL C57BL6 mice groups: (NP-control), 12, 15 and 19 days (d) after checking the vaginal plug and 3th, 5th and 10thpp. In tensile testing the maximum force required to initiate the rupture of the tissue decreased in the course of pregnancy, with the lowest value measured at day of birth, increasing from this day on and at the 10dpp returned to the NP individual¿s value.The total rupture energy (TRE) decreasesat d12 and increased from d15 until 5dpp, decreasing at the 10dpp but remained lower than the NP. Immunolocalization of COMP and GAL3 proteins were detected in all groups, with variations in cell type and location. The bicornuate uterus morphology of the mice and the weight of the uterus with cubs alter the mechanical stimuli in interpubic tissues, contribute to its remodeling. In 3dpp when mechanical stimuli were abruptly removed at birth. It was observed organelles consisting of microtubules that were similar to a solitary cilium quoted as mechanosensory organelle.The biomechanical behavior of interpubic tissues during pregnancy and after delivery was consistent with the histoarchitecture and immunolocalization of COMP and GAL-3 protein, as the biomechanical behavior of the tissue changes are indicative that these proteins are involved in the remodeling of transitions bony and ligamentous elements and fibrocartilaginous during pregnancy and after childbirth. This remodeling that provides removal of pubic bones and a quick postpartum recovery, offers birth canal support of animals that have bicornuate uterus such as the mouse, guinea pig and bat / Doutorado / Biologia Tecidual / Doutora em Biologia Celular e Estrutural
14

Intéraction des spermatozoïdes avec l'épithélium du tractus génital femelle : réservoirs spermatiques, protéomique, et fertilité / Interaction of spermatozoa with hen's genital tract epithelium : sperm reservoir, proteomics and fertility

Riou, Cindy 22 December 2017 (has links)
Chez les espèces aviaires, le stockage des spermatozoïdes s’étend sur plusieurs semaines principalement au niveau du réservoir de la jonction utéro-vaginale, contenant les tubules de stockage des spermatozoïdes (SST). Les mécanismes impliqués dans ce processus restent indéterminés. L’effet de l’insémination artificielle (IA) a été évalué sur le protéome du fluide utérin (FU), des protéines cibles et des glycanes dans les SST, provenant de poules possédant une longue (F+) ou courte (F-) durée de stockage. La longue durée de stockage est associée à une abondance relative dans le FU après IA des protéines exosomales (ANXA4, ANXA5), des protéoglycanes (TSKU), des protéines liant les protéoglycanes (HAPLN3, FN1, VTN), des transporteurs de lipides (VTG1, VTG2, APOA1, APOA4, APOH), et des protéines matricielles de la coquille (OCX32). Au contraire, la faible capacité de stockage est associée à la régulation après IA des protéines immunitaires (PIGR, immunoglobulines) ou pro-inflammatoire (LTA4H), des protéases (XPNPEP1), des chaperones (HSPA8), des mucines (MUC5AC, MUC5B), et de l’ovalbumine (OVALY). Au niveau des SST, les protéines matricielles de la coquille (OC-116, OCX36, OC-17) ont été identifiées dans l’épithélium et la lumière. La longue durée de stockage est associée à la sécrétion luminale de résidus Glc/GlcNAc, à la mobilisation apicale de protéines exosomales (ANXA4), et la non-activation des voies métaboliques impliquant les protéines PIGR, HSPA8, et ANXA5 dans les SST. En conclusion, la composition protéique du FU et des SST requièrent des régulations spécifiques après IA certainement pour garantir le stockage des spermatozoïdes. / In avian species, the sperm storage mainly takes place in uterovaginal sperm storage tubules (SST) during several weeks. Mechanisms implied in this process are not fully understood. The effect of artificial insemination (AI) has been evaluated on the uterine fluid (UF) proteomic composition, and on SST candidate proteins, from hens exhibiting long (F+) or short (F-) sperm storage duration. Long sperm storage duration was associated with the relative abundance in UF after AI of proteoglycans (TSKU), proteoglycan binding proteins (HAPLN3, FN1, VTN), lipid transporters (VTG1, VTG2, APOA1, APOA4, APOH), and eggshell matrix proteins (OCX32). In contrast, poor sperm storage ability was associated with the regulation of immune factors (PIGR, immunoglobulins), pro-inflammatory factors (LTA4H), proteases (XPNPEP1), chaperone (HSPA8), mucins (MUC5AC, MUC5B), and ovalbumin related protein Y (OVALY). At the level of SST, eggshell matrix proteins (OC-116, OCX36, OC-17) were identified in SST cells and lumen. Long sperm storage duration was associated in SST with the luminal secretion of Glc/GlcNAc residues, ANXA4 apical mobilization, and non-activation of metabolic pathway implying PIGR, HSPA8, and ANXA5. In conclusion, the proteomic composition of UF and SST require specific regulation after insemination, most probably to guarantee the success of sperm storage process.
15

<b>EXPLORING THE STRUCTURAL DETERMINANTS OF EBOLAVIRUS MATRIX PROTEIN (VP40) DIMER INTERFACE: BIOPHYSICAL AND PEPTIDOMIMETIC ANALYSIS OF DIMER STABILITY</b>

Roopashi Saxena (18266236) 28 March 2024 (has links)
<p dir="ltr">Ebola virus is an enveloped filamentous shaped RNA virus which causes severe hemorrhagic fever in humans. Multiple outbreaks of different strains of ebolavirus have been reported in the past years with limited therapeutics available for treatment. Despite some advances in treatment, there remains a lack of knowledge about the mechanisms of ebolavirus replication in host cells.</p><p dir="ltr">Ebolavirus encodes for seven structural proteins with matrix protein (VP40) being the most abundantly expressed viral protein. VP40 is essential for viral assembly and budding as expression of VP40 alone is sufficient for formation of virus-like particles (VLPs). VP40 also disassembles during viral entry to help in viral and host cell membrane fusion. Oligomerization of VP40 has been reported to decrease viral replication and transcription. VP40 can perform these diverse functions by virtue of changes in conformation and oligomerization state. VP40 predominantly exists as a dimer through hydrophobic interactions between the alpha helices of the two protomers. Furthermore, VP40 oligomerizes into a hexamer which serves as the structural unit for cylindrical matrix layer formation. VP40 also forms a ring-shaped octamer for regulation of viral transcription. The different oligomeric forms of VP40 exist in an equilibrium for successful viral infection. However, the exact mechanism of formation, stability, and energetics of conversion between these oligomeric forms is unknown.</p><p dir="ltr">In this study, we performed biophysical analysis on the dimerization interface and identified keystone interactions which when abrogated lead to complete disruption of dimer interface. In addition, peptidomimetics approach was used to design and synthesize a library of compounds to probe the dimerization interface. The compounds were screened using thermal shift assay and then compared using MST and ITC studies. We identified that a peptide mimicking the alpha helical region stabilized by a p-xylene di-cysteine staple was able to bind to VP40 dimer. We also determined that this peptide binds near the dimer interface and was able to slightly shift equilibrium of VP40 dimer towards monomer formation.</p><p dir="ltr">Overall, this report sheds light on critical interactions required for VP40 dimer formation and stability and introduces use of peptidomimetics to probe for VP40 dimerization interface to understand energetics of oligomerization equilibrium, thereby increasing our knowledge about disease mechanism and paving way for development of therapeutics.</p>
16

<b>Evaluating the role of the Ebola virus (EBOV) matrix protein (VP40) surface charge and host cell calcium levels on EBOV plasma membrane assembly and budding.</b>

Balindile Bhekiwe Motsa (18426324) 24 April 2024 (has links)
<p dir="ltr">The Ebola virus (EBOV) is a filamentous RNA virus which causes severe hemorrhagic fever. It is one of the most dangerous known pathogens with a high fatality rate. Multiple outbreaks of EBOV have occurred since the 1970s with the most widespread outbreak starting in December 2013. This outbreak continued through May of 2016 and had a fatality rate of approximately 50%. EBOV outbreaks are recurrent because the virus is still present in animal reservoirs. Despite multiple EBOV outbreaks we still lack a clear understanding of how new viral particles are formed and spread through virus assembly and release. Given the widespread global travel, EBOV now poses a threat to the entire world. EBOV encodes for the matrix protein, VP40, which is one of the most conserved viral proteins. VP40 can form different structures leading to different functions of the protein in different stages of the EBOV life cycle. The VP40 dimer traffics to the inner leaflet of the plasma membrane to facilitate assembly and budding. The VP40 octameric ring has been implicated in transcriptional regulation. This thesis focuses on understanding in further detail the determinates of VP40 plasma membrane assembly and exit from an infected cell.</p><p dir="ltr">The assembly and trafficking of VP40 to the plasma membrane requires a network of protein-protein and lipid-protein interactions (PPIs and LPIs). Studying these interfaces is important for understanding how VP40 structure and function regulates trafficking and assembly and can shed light on therapeutic strategies to target EBOV. The alteration of host cell Ca<sup>2+</sup> levels is one of the strategies that viruses use to perturb the host cell signaling transduction mechanism in their favor. Evidence has emerged demonstrating that Ca<sup>2+</sup> is important for the assembly and budding of EBOV in a VP40-dependent manner. The relationship between intracellular Ca<sup>2+</sup> levels and EBOV matrix protein VP40 function is still unknown. In this work we utilize biophysical techniques to study the role of LPIs and intracellular Ca<sup>2+</sup> on VP40 dynamics at the plasma membrane and key residues for assembly and budding. This work highlights the sensitivity of slight electrostatic changes on the VP40 surface for assembly and budding and a critical interaction between Ca<sup>2+</sup> and the VP40 dimer that are important for lipid binding at the plasma membrane.</p>
17

Biolubricants and Biolubrication

Wang, Min January 2014 (has links)
The main objective of this thesis work was to gain understanding of the principles of biolubrication, focusing on synergistic effects between biolubricants. To this end surface force and friction measurements were carried out by means of Atomic Force Microscopy, using hydrophilic and hydrophobic model surfaces in salt solutions of high ionic strength (≈ 150 mM) in presence of different biolubricants. There was also a need to gain information on the adsorbed layers formed by the biolubricants. This was achieved by using a range of methods such as Atomic Force Microscopy PeakForce imaging, Quartz Crystal Microbalance with Dissipation, Dynamic Light Scattering and X-Ray Reflectometry. By combining data from these techniques, detailed information about the adsorbed layers could be obtained.The biolubricants that were chosen for investigation were a phospholipid, hyaluronan, lubricin, and cartilage oligomeric matrix protein (COMP) that all exist in the synovial joint area. First the lubrication ability of these components alone was investigated, and then focus was turned to two pairs that are known or assumed to associate in the synovial area. Of the biolubricants that were investigated, it was only the phospholipid 1,2-dipalmitoyl-sn-glycero-3-phosphocholine (DPPC) that was found to be an efficient lubricant on its own. Deposited DPPC bilayers on silica surfaces were found to be able to provide very low friction coefficients (≈ 0.01) up to high pressures, ≈ 50 MPa. A higher load bearing capacity was found for DPPC in the liquid crystalline state compared to in the gel state.The first synergy pair that was explored was DPPC and hyaluronan, that is known to associate on the cartilage surface, and we also noticed association between hyaluronan and DPPC vesicles as well as with adsorbed DPPC bilayers. By combining these two components a lubrication performance similar to that of DPPC alone could be achieved, even though the friction coefficient in presence of hyaluronan was found to be slightly higher. The synergy here is thus not in form of an increased performance, but rather that the presence of hyaluronan allows a large amount of the phospholipid lubricant to accumulate where it is needed, i.e. on the sliding surfaces.The other synergy pair was lubricin and COMP that recently has been shown to be co-localized on the cartilage surface, and thus suggested to associate with each other. Lubricin, as a single component, provided poor lubrication of PMMA surfaces, which we utilized as model hydrophobic surfaces. However, if COMP first was allowed to coat the surface, and then lubricin was added a low friction coefficient (≈ 0.03) was found. In this case the synergy arises from COMP facilitating strong anchoring of lubricin to the surface in conformations that provide good lubrication performance. / Huvudsyftet med det här avhandlingsarbetet var att öka förståelsen för den låga friktion som finns i vissa biologiska system, med fokus på synergistiska effekter mellan de smörjande molekylerna. För detta ändamål studerades ytkrafter och friktion med hjälp av atomkraftsmikroskopi. Mätningarna utfördes med hydrofila och hydrofoba modellytor i lösningar med hög salthalt (≈ 150 mM) i närvaro av smörjande biomolekyler. Det var också nödvändigt att få information om de adsorberade skikten av biomolekyler. Det åstadkoms med hjälp av en rad tekniker så som AFM PeakForce avbildning, kvartskristallmikrovåg, dynamisk ljusspridning och röntgen reflektometri. Genom att kombinera data från dessa tekniker erhölls detaljerad information om de smörjande skikten.De smörjande biomolekyler som valdes ut för studierna var en fosfolipid, hyaluronan, lubricin, and cartilage oligomeric matrix protein (COMP) vilka alla finns i synovialledsområdet. Först undersöktes den smörjande förmågan hos dessa komponenter var för sig, och sedan fokuserade vi på två par av biomolekyler som man vet eller antar bildar associationsstrukturer i synovialleder. Av de enskilda biomolekyler som undersöktes var det endast fosfolipiden 1,2-dipalmitoyl-sn-glycero-3-fosfokoline (DPPC) som visade sig vara en effektivt smörjande molekyl. Deponerade biskikt av DPPC på silikaytor gav upphov till mycket låga friktionskoefficienter (≈ 0.01) upp till höga pålagda tryck, ≈ 50 MPa. DPPC bilager i flytande kristallin fas visade sig ha högre lastbärande förmåga än DPPC bilager i geltillstånd.Det första synergistiska par som undersöktes var DPPC och hyaluronan vilka man vet associerar på broskytan, och vi visade att hyaluronan associerar med såväl DPPC vesiklar som med DPPC bilager. Genom att kombinera dessa två komponenter uppmättes en smörjande förmåga som var jämförbar med den som DPPC ensam uppvisar. Även om friktionskoefficienten var något högre i närvaro av hyaluronan. Synergieffekten här består inte av en bättre smörjande förmåga, utan istället gör närvaron av hyaluronan att de smörjande fosfolipiderna kan ansamlas i stora mängder där de behövs, dvs. på de glidande ytorna.Det andra synergiparet var lubricin och COMP vilka nyligen har visats vara lokaliserade på samma platser på broskytan, vilket tyder på att de associerar med varandra. På egen hand var lubricins smörjande förmåga av PMMA, våra hydrofoba modellytor, dålig. Emellertid, om COMP först adsorberades på PMMA och sedan lubricin tillsattes uppmättes en låg friktionskoefficient (≈ 0.03). I det här fallet består synergin av att COMP möjliggör en stark inbindning till ytan av lubricin i konformationer som ger god smörjande förmåga. / <p>QC 20141202</p> / Stiftelsen för strategisk forskning - SSF
18

Études fonctionnelles et structurales de protéines rétrovirales, Gag du FIV et Tat du VIH-1, à des fins thérapeutiques et vaccinales / Functional and structural studies of retroviral proteins, FIV Gag and HIV-1 Tat, for therapeutic and vaccine purposes

Serriere, Jennifer 09 October 2012 (has links)
Depuis sa découverte il y a plus de 30 ans, le Virus de l’Immunodéficience Humaine est à l’origine d’une importante mortalité dans le monde. De par la difficulté de tester l’efficacité de formulations thérapeutiques et/ou vaccinales directement chez l’homme, des études d’infections modèles du VIH, comme celle du Virus de l’Immunodéficience Féline (FIV), ont été entreprises ces dernières années. Au-delà de son intérêt vétérinaire, l’étude du FIV représente un avantage important pour trouver un moyen de contrôler les infections par les lentivirus tel que le VIH. Elle peut permettre de développer et surtout de tester l’efficacité des vaccins et/ou thérapies spécifiques chez le chat, dont le SIDA mime les symptômes et les modifications hématologiques rencontrés chez l’homme. Ce manuscrit s’est intéressé à l’étude structurale de deux familles de protéines virales de ces virus, les protéines lentivirales précoces (protéine Tat du VIH) et tardives (domaines Capside CA et Matrice MA de Gag du FIV). L’étude structurale de ces protéines et leur compréhension fonctionnelle au sein de l’hôte pourront à l’avenir ouvrir de nouvelles voies thérapeutiques et/ou vaccinales contre les lentivirus, palliant ainsi les problèmes existants de résistances virales / Since its discovery 30 years ago, the Human Immunodeficiency Virus is the cause of an important mortality worldwide. Because of the difficulty to test the efficiency of therapeutical and/or vaccinal formulations directly in humans, studies of models of HIV infections, such as the Feline Immunodeficiency Virus (FIV), have been performed in recent years. In addition to its veterinary interest, the study of FIV is an important issue to find a way to control infections by lentiviruses such as HIV. It can help to develop and test the efficiency of specific therapies and/or vaccines for cats, where AIDS mimics the symptoms and hematologic changes observed in humans. This manuscript describes the structural study of two types of viral proteins of these viruses, early lentiviral proteins (HIV Tat protein) and late lentiviral proteins (CA capsid and MA Matrix domains of FIV Gag). The structural study of these proteins and their functional understanding into the host will open new therapeutic and/or vaccine strategies against these lentiviruses in the future, in order to overcome the existing problems of viral resistance
19

Influenza matrix protein M1

Jungnick, Nadine 21 December 2011 (has links)
Die Aufklärung der Prozesse, die zur Zusammensetzung des Influenza A Virus führen, ist Bestandteil für die Bekämpfung dieser Infektionskrankheit. Der Viruspartikel setzt sich aus einer Hülle, der darunter liegenden Matrix und dem Genom zusammen. Das Genom ist als Bündel aus acht Ribunucleoproteinkomplexen organisiert. Die Hülle besteht aus einer Membran, die mit Sphingomyelin und Cholesterol angereichert ist und den darin eingebetteten Membranproteinen Hämagglutinin, Neuraminidase und dem Protonenkanal M2. Die unter der Hülle liegende Matrix wird von einem einzigen Influenzaprotein formiert: Dem Matrixprotein M1. Es spielt eine Schlüsselrolle im Replikationszyklus des Virus in der Zelle. Es interagiert mit dem genetischen Material, mit den Membranproteinen und der Lipidmembran der Hülle. Die vorliegende Arbeit gibt Auskunft, welche Lipide eine Rolle in der M1-MembranWechselwirkung spielen. Die Liste der identifizierten Lipide umfasst neben dem bereits bekannten Phosphatidylserin auch Phosphatidylglycerol und Phosphatidsäure. Verschiedene Phosphatidylinositole konnten ebenfalls identifiziert werden. Als stärkster M1 Bindungspartner trat dabei Phosphatidylinositol-4-Phosphat zutage. Weitere auf Mutanten basierende Untersuchungen zeigten, dass der membranbindende Bereich nicht auf eine einzelne Domäne in M1 festgelegt werden kann. Die N-terminale M1-Domäne mit ihrem Oberflächen-exponierten, positiv geladenen Areal und die C-terminale Domäne interagierten mit Modellmembranen. Das Resultat dieser Interaktionen konnte mittels mikroskopischer Untersuchungen an gigantischen unilamellaren Vesikeln dokumentiert werden. Für M1 und für eine Mutante, die nur aus der N-terminalen M1-Domäne besteht, konnte eine von anderen viralen Proteinen unabhängige homooligomere Organisation auf der Membran gezeigt werden. Diese M1-Cluster könnten während der Zusammensetzung des Viruspartikels als Fundament für die Eingliederung aller weiteren viralen Komponenten dienen. / about the assembly process of the influenza A virus particle is essential for the development of effective approaches for prevention and treatment of this virus infection. The virus particle consists of an envelope, an underlying matrix, and the encapsulated genome. The genetic material is organized as bundle of eight ribonucleoprotein complexes that encode for eleven proteins. The envelope consists of a lipid bilayer that is enriched in sphingomyelin and cholesterol. The viral spike proteins, hemagglutinin and neuraminidase, as well as the proton channel M2 are embedded into this membrane. The matrix can be found below the envelope. It is formed by one single protein, the matrix protein M1. M1 plays a crucial role during the replication of the virus in the cell. It interacts with the genetic material, with the envelope proteins and with the lipid bilayer of the envelope. The results of this study reveal in detail which lipids are targeted by M1. The set of identified lipids contains phosphatylglycerol and phosphatidic acids as new binding partners, beside the known phophatidylserine. Additionally, several phosphatidylinositols were identified. Phosphatidylinositol-4-phosphate was the strongest binding partner from this group. Mutant-based analysis revealed that M1 owns more than one membrane binding site. The positively charged area in the N-terminal and the C-terminal domain mediated membrane association of the respective mutant protein. The final constitution of M1 on the membrane was characterized by confocal fluorescence microscopy on giant unilamellar vesicles. Full length M1 and a mutant that consisted only of the N-terminal part of M1 showed lateral clustering of homooligomers on the vesicle surface. The clusters formed independently of any other viral component. A function as fundament for the incorporation of the other viral components can be assumed for these clusters.
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Conservation of mechanosignaling: responses of human adult mesenchymal stem cells and differentiated vascular cells to applied physical forces

Doyle, Adele Marion 25 March 2010 (has links)
Mesenchymal stem cells (MSCs) may benefit vascular cell-based therapies as smooth muscle or endothelial cell substitutes or through paracrine actions to repair, replace, or regenerate vascular tissue. Previous studies have demonstrated that MSCs can adopt traits of smooth muscle cells (SMCs) or endothelial cells (ECs), as well as secrete specific factors that tune signaling and material properties in the local environment. Few studies have investigated the cell signaling response of MSCs to mechanical forces present in the vasculature: specifically, shear stress due to blood flow and cyclic strain due to pulsatile blood flow. Thus, the central objective of this dissertation was to determine the signaling responses of MSCs to vascular-relevant applied physical forces, in comparison with that of differentiated vascular cells. Vascular-relevant mechanosignaling of MSCs was assessed through two comparisons: (1) MSC and SMC responses to applied cyclic strain and (2) MSC and EC responses to applied fluid shear stress. MSCs and SMCs were seeded on fibronectin-coated silicone and subjected in vitro to cyclic strain (10%, 1 Hz) or parallel static culture using a custom-built equibiaxial cyclic strain device. Gene expression analysis of 84 signal transduction molecules demonstrated both cell types respond with significant (p<0.05, n=3) fold-changes (|FC|≥ 1.5) within 24 hours of applied equibiaxial strain. Most strain-responsive genes identified were significantly strain-responsive in only one cell type. A signaling trio of Interleukin 8, Vascular cell adhesion molecule 1, and Heme oxygenase 1 was significantly altered in both MSCs and SMCs, suggesting cyclic strain regulates immune and inflammatory functions in both cell types. The response to shear stress of MSCs and ECs was compared using cells seeded on type I collagen or fibronectin and exposed to steady laminar shear stress (5 or 15 dyn/sq-cm) using a parallel plate shear chamber system. Gene expression was compared in MSCs and ECs for a panel of immune and inflammation-related markers. Expression of Cox-2 and Hmox-1 increased significantly (p<0.05, n≥3; |FC|≥1:5) in both cell types. Reduced shear stress-responses of Mcp-1, Pecam-1, and VE-Cad in MSCs relative to ECs suggests that MSCs promote less inflammation and immune activation in response to shear stress than ECs. Mechanosensitivity profiles for MSCs and differentiated vascular cells were broadened using whole genome microarrays. These high-throughput studies confirmed that (1) signaling profiles between sample groups vary significantly more (p<0.05, n=3) with cell type than applied force condition and (2) a subset of conserved mechanosensitive genes alter expression levels significantly and in the same direction fold-change in multiple cell types. Bioinformatics analysis of these conserved mechanoresponsive genes highlighted oxidative stress, cell cycle, and DNA replication as functions regulated by vascular-relevant mechanical cues. These studies demonstrate that MSCs partially reproduce differentiated vascular cell mechanosignaling, while simultaneously altering expression of genes not typically force-responsive in vascular cells. This work defines a role for conserved mechanosignals, based on genes whose expression in response to applied force alters significantly (p<0.05, n≥3) and by at least 1.5-fold change in multiple cell types and/or force types. Comparisons completed for this dissertation motivate future studies to track the functional impact of specific similar or unique MSC mechanoresponses. This work contributes to design of MSC-based vascular therapies and an understanding of stem and differentiated cell mechanobiology.

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