No description available.

Growth Hormone (GH), also known as somatotropin, is a protein hormone secreted from the anterior pituitary gland. GH action results in longitudinal bone growth in children and adolescents and continues later to control a variety of metabolic reactions in adults. DNA polymorphisms leading to a decrease in GH expression result in persons of short stature, whereas those leading to overexpression of GH produce either acromegaly or gigantism. In order to diagnose and treat patients with altered GH production, understanding the control of GH expression is thus clinically relevant. In order to understand how transcription of GH is determined by selective regulatory modulators, two rat somatotroph cell lines were studied that differed in their relative differentiation: MtT/S cells are considered as fully differentiated somatotrophs that express GH exclusively; MtT/Se cells are related somatotrophs with GH expression that is responsive to estrogen treatment. These cell lines were obtained from the Riken Cell Bank (Japan) and then grown and cultured in accordance with established protocols. After harvesting of cells from each line, total RNA was extracted using a rapid affinity method (Qiagen). After validation of the RNA integrity index of each RNA isolate (Affymetrix), they were sent to an off-site laboratory (NovoGene) for RNA-Seq analysis. Samples were examined in triplicate for comparison using standard procedures for adapter ligation, library construction, amplification and sequencing. In our previous work with single gene quantitative RT-PCR, we measured expression of 9 separate targets, primarily transcriptional controllers, in these cell lines. Now, the use of RNA-Seq quantifies the levels of all mRNAs in each sample without the need for specific primers or probes. Therefore, it is possible to find nearly all of the mRNAs that demonstrate changing abundance without requiring prior evidence of their role in the terminal differentiation of the MtT/S from MtT/Se cells. After extensive QC for validation, initial analysis of the data shows more than 36 million validated sequenced reads from each replicate sample with >96.39% mapping to the reference rat genome sequence. Basic analysis shows that 13,012 expressed genes were 87% similar, with 1,175 (9.0%) unique to MtT/Se cells and 484 (3.7%) genes selectively present in MtT/S cells. Of these, 329 genes were upregulated in expression while only 57 were reduced. For comparison with our previous study, we are now confirming differences in GH transcripts and the transcription factors/regulators previously measured, particularly the GH regulator Zn16, a protein with 16 zinc fingers known to bind to the GH promoter DNA. Further analysis of the RNA-Seq profile is focused on the unique and unidentified changes in expression that differentiate these cell lines. Analysis of the differentiation of MtT/S and MtT/Se cells will further understanding of GH regulation in the body.

No description available.

Improving the efficiency by which crops use nutrients is critical for maintaining high crop productivity while reducing fertility management costs and eutrophication related to fertilizer runoff. The native crucifer and halophyte, Yukon Eutrema salsugineum, was used in this study. Yukon E. salsugineum is closely related to important Brassica crops and thrives in its native habitat on soil that is low in available phosphate (Pi) and high in sulfur (S). To determine how Yukon E. salsugineum copes with low Pi, leaf transcriptomes were prepared from four week-old plants grown in controlled environment chambers using soil lacking or supplemented with Pi and/or S. This thesis focused on using bioinformatic approaches to assemble, analyze and compare the transcriptome profiles produced by the Yukon E. salsugineum plants undergoing four nutrient combinations of high and/or low Pi and S. The objective of the study was to identify traits associated with altered S and/or Pi with the prediction based on other species that low Pi, in particular, would pose the greatest stress and hence elicit the greatest transcriptional reprogramming. Transcriptome libraries were generated from four treatment groups with three biological replicates each. Reads in each library were mapped to 23,578 genes in the E. salsugineum transcriptome with an average unique read mapping ratio of 99.52%. Surprisingly, pairwise comparisons of the transcriptomes showed little evidence of Pi-responsive reprogramming whereas treatments differing in soil S content showed a clear S-responsive transcriptome profile. Principal Component Analysis revealed that the low variance quaternary Principal Component distinguished the transcriptomes of plants undergoing low versus high Pi treatments with differential gene expression analysis only finding 11 Pi-responsive genes. This outcome suggests that leaf transcriptomes of Yukon E. salsugineum plants under low Pi are largely undifferentiated from plants provided with Pi and is consistent with Yukon E. salsugineum maintaining Pi homeostasis through fine-tuning the expression of protein-coding and non-coding RNA rather than large-scale transcriptomic reprogramming. Previous research has shown Yukon E. salsugineum to be very efficient in its use of Pi and this work suggests that the altered expression of relatively few genes may be needed to develop Pi-efficient crops to sustain the crop demand of a growing population. / Thesis / Master of Science (MSc)

En 2010, Haurie et al. ont identifié deux isoformes différentes de la Pol III humaine : Pol IIIα, quin’est présente que dans les cellules souches embryonnaires et dans celles tumorales, et Pol IIIβ,exprimée constitutivement.L’expression ectopique de Pol IIIα affecte profondément l’équilibre de cellules différentiées, jusqu’àen induire la transformation oncogénique. Ceci n’est pas observé dans le cas de l’expression ectopiquede Pol IIIβ.A fin de définir les causes moléculaires de la transformation cellulaire induite par Pol IIIα, nousavons décidé d’étudier son transcriptome en comparaison avec celui de Pol IIIβ, à la recherche desgènes qui pourraient soutenir l’oncogenèse observée. Dans notre étude, nous avons adopté latechnique du ChIP-Seq, une approche innovatrice et puissante qui permet de cartographier tous lessites de liaison d’une protéine sur le génome. Elle comporte la purification de la protéine d’intérêtcomplexe avec ces cibles génomiques et le séquençage de ces dernières de manière massive.Le premier but de cette thèse a été représenté par la mise a point d’un protocole de ChIP-Seqoptimisé spécifiquement pour Pol IIIα et Pol IIIβ. Une fois obtenue une préparation de chromatine dequalité adéquate aux standards du ChIP-Seq, nous avons effectué les séquençages massifs etcartographié sur le génome tous les loci contactés par les deux isoformes de polymérase.De cette manière, nous avons identifié 1287 loci occupés par Pol IIIα et 1281 par Pol IIIβ. Les deuxpolymérases se co-localisent sur la plupart de ces sites, mais montrent aussi une occupationpréférentielle et spécifique sur une fraction de loci Pol III. Cette disproportion pourrait contribuer auphénomène cellulaire observé par Haurie et al.Le manuscrit de thèse détaille les résultats de cette analyse et les conclusions qui en dérivent.Nous y avons ajouté une synthèse des travaux réalisés antérieurement et concertants la caractérisationdes promoteurs de gène qui codent pour les snoARN chez la levure S.cerevisiae, positionnée en toutefin de document. / In eukaryotes, transcription is carried out by DNA-dependent RNA polymerases I, II and III (or I-V inplants). These RNA polymerases are specialized in the transcription of specific groups of genes.Human RNA polymerase III (Pol III) transcribes small noncoding RNAs involved in the regulation oftranscription (7SK RNA), RNA processing (U6 RNA, RNAse P, RNAse MRP), translation (tRNAs,5S RNA) or other cellular processes (vault RNAs [multidrug resistance], adenoviral RNAs [VA-I,VA-II], Epstein-Barr virus RNAs [EBER1, EBER2]). It has furthermore been reported that somemicroRNAs of viral or cellular origin may also be transcribed by Pol III.Interestingly, increased Pol III transcription levels accompany or cause cell transformation. Themechanisms underlying this phenomenon are still largely unknown. Recently, two distinct isoforms ofhuman Pol III have been discovered (Haurie et al., 2010). RPC32β-containing Pol IIIβ is ubiquitouslyexpressed and essential for growth and survival of human cells. In contrast, RPC32α-containing PolIIIα is dispensable for cell survival and its expression is restricted to undifferentiated embryonic stem(ES) cells and to tumor cells.The distinct effects of Pol IIIα and Pol III β on cell growth and transformation may be explained bythe transcription of isoform-specific target genes. To identify such isoform-specific target genes, wespecifically targeted RPC32α and of RPC32β subunits in chromatin immunoprecipitation (ChIP)experiments and analyzed the co-precipitated DNA sequences by high throughput sequencing (ChIPseq.).Genome wide localization of RPC32α and RPC32β subunits of Pol III revealed the presence of bothsubunits on many of the known Pol III-transcribed genes, suggesting redundant activities of bothisoforms of Pol III in transcription of these genes. We also found that some of the genes known to betranscribed by Pol III are only occupied by either RPC32α or by RPC32β, suggesting that these genesare exclusively transcribed by Pol IIIα or by Pol IIIβ, respectively.RPC32α and RPC32β ChIP-seq. results furthermore led to the identification of novel Pol III candidategenes in HeLa cells. Moreover, we found high levels of Pol IIIα or Pol III β at some of the annotatedtRNA pseudogenes, implicating that these genes may be transcribed. The functions of RNAstranscribed from novel putative Pol III genes or from tRNA pseudogenes remain to be determined.

Hypoxia regulates many hundreds of genes with important roles in ischemic and neoplastic disorders. Central to this response are the hypoxia inducible transcription factors (HIF). This work aimed to better understand the direct transcriptional response to HIF by mapping HIF-binding sites across the genome using chromatin immunoprecipitation coupled to high-throughput sequencing (ChIP-seq). ChIP-seq for HIF in MCF-7 breast cancer cells under hypoxic conditions revealed more than 400 high-stringency HIF-binding sites genome-wide. Each member of the HIF heterodimer was present with near complete concordance. Binding of the two principle isoforms revealed a high degree of overlap with no differences in the DNA-binding motif. HIF-binding was associated with upregulation, but not downregulation of genes indicating that it functions as a transcriptional activator but not as a repressor. HIF-binding occurred preferentially at gene promoters, but was also present at promoter-distant sites, which were also associated with gene regulation, implicating long-range interactions in hypoxic gene activation. HIF-binding was associated with markers of open chromatin and active enhancers that were present in normoxia, indicating that HIF-binding sites are already “prepared” to bind HIF before the hypoxic stimulus. Analysis of normoxic and hypoxic RNA pol2 and H3K4me3 signals revealed distinctive hypoxia-inducible changes unique to HIF-binding genes. Comparable numbers of HIF-binding sites were observed in a second cell line (von Hippel-Lindau defective 786-O renal cancer cells) as in MCF-7 breast cancer cells, although approximately 65% were unique to 786-O cells. These unique sites were more frequently promoter-distant. Correlation with expression analyses from renal tumours indicated that many HIF-binding genes were upregulated in renal cancer. One such RCC unique promoter-distant HIF-binding site was identified at an intergenic locus on chromosome 11q13.3 that has been associated with renal cancer in Genome-Wide Association Studies. The HIF-binding site was in high linkage disequilibrium with the disease associated SNP and had the epigenetic hallmarks of an enhancer. Analysis of pan-genomic expression analyses identified the cell-cycle regulator cyclin D1 as highly HIF-regulated, and a physical association between the HIF-binding site and the CCND1 promoter could be determined. Furthermore, in a renal cancer cell line heterozygous at this locus, the RCC-protective allele disrupted HIF-binding leading to an allelic imbalance in cyclin D1 expression.

Glicocorticoides (GCs) modulam a reprodução, interferindo na produção de hormônios gonadais, estradiol (E2) e progesterona (P4). Concomitantemente, E2 e P4 também influenciam a liberação de cortisol. Além disso, em altas concentrações os GCs interferem na via de sinalização da insulina prejudicando o funcionamento dos órgãos, incluindo os do sistema reprodutivo bem como a produção de P4 pelo corpo lúteo (CL). O CL utiliza glicose para manter sua atividade, e o cortisol interfere na via de sinalização da glicose em diversos tecidos, porém ainda não existem estudos quanto à sua atividade no CL canino, tampouco quanto à presença de genes relacionados à via de sinalização dos GCs neste órgão. Os objetivos deste estudo foram caracterizar a expressão dos genes relacionados à via de sinalização dos GCs e da insulina em CL de cadelas cíclicas e identificar expressão diferencial destes genes entre os dias 20 e 60 do diestro, que correspondem à fase final de crescimento do CL e à fase de regressão luteínica, respectivamente. Ainda, avaliar as concentrações basais de cortisol salivar (CS) e metabólitos fecais de glicocorticoides (MGFs) em diferentes dias do diestro (10, 20, 30, 40, 50 e 60) de cadelas cíclicas, comparando com os níveis de E2 e P4 já publicados; correlacionar os valores obtidos nas duas técnicas; e estabelecer um intervalo de valores basais de CS e MFGs para o diestro. Para esta pesquisa foram selecionadas 28 cadelas cíclicas saudáveis; foi realizado o sequenciamento de nova geração (RNA-Seq) dos CLs coletados de 18 animais em dias específicos do diestro (dia 10, 20, 30, 40, 50 e 60 pós-ovulação); das outras 10 cadelas foram coletadas amostras de fezes e saliva, durante todo o diestro, e realizada mensuração da concentração de MFGs e CS. Nos resultados de RNA-Seq foi identificada a expressão dos genes NR3C1, HSD11B1, HSD11B2, SLC2A4, INSR e IRS1. Os genes NR3C1 (p>0,3; FDRCortisol. Corpo lúteo. Insulina. Diestro. RNA-Seq 0,6) e SLC2A4 (pCortisol. Corpo lúteo. Insulina. Diestro. RNA-Seq Cortisol. Corpo lúteo. Insulina. Diestro. RNA-Seq 0,02; FDRCortisol. Corpo lúteo. Insulina. Diestro. RNA-Seq 0,1) não apresentaram expressão diferencial no diestro. Os genes HSD11B1 (p=0,0001; FDR=0,0021), HSD11B2 (p=0,013; FDR=0,06), INSR (p=0,002; FDR=0,01) mostraram maior expressão no dia 20 do diestro, quando comparado ao dia 60. O gene IRS1 (p=0,0006; FDR= 0,006) estava mais expresso no dia 60 do diestro em relação do dia 20. As dosagens hormonais demonstraram que no dia 10 do diestro (CS=0,0656 ± 0,0237µg/dL e MGFs=110,41 Cortisol. Corpo lúteo. Insulina. Diestro. RNA-Seq 46,51pg/ng) as duas mensurações apresentaram concentrações menores que nos demais dias do diestro (CS=0,1027 Cortisol. Corpo lúteo. Insulina. Diestro. RNA-Seq 0,0496µg/dL e MFGs=220,22 Cortisol. Corpo lúteo. Insulina. Diestro. RNA-Seq 183,74pg/ng). A concentração média de CS=0,0972µg/dL (0,011-0,246µg/dL) e MFGs=189,875pg/ng (9pg/ng-1067,2pg/ng) foi definida para o diestro canino. Estes resultados sugerem que o CL canino também é influenciado pelo cortisol circulante da mesma forma que outros tecidos já estudados, podendo interferir na via de sinalização da insulina e, consequentemente, prejudicar seu funcionamento e o sucesso reprodutivo. Além disso, em relação aos resultados das dosagens hormonais, os níveis baixos de CS e MFGs no dia 10 do diestro corroboram com os achados em literatura e com a queda de E2 neste mesmo período, o que sugere uma associação entre a produção de ambos os hormônios. / Glucocorticoids (GCs) modulate reproduction by interfering in the gonadal hormones production, estradiol (E2) and progesterone (P4). Likewise, E2 and P4 influence release of cortisol. Furthermore, high concentrations of GCs may harm the functioning of organs, including reproductive organs and progesterone (P4) production by the corpus luteum (CL). CL utilizes glucose to maintain its own activity and cortisol interferes with the glucose signaling pathway in several tissues. Studies characterizing cortisol activity and expression of genes related to GC signaling pathways in canine CL are still scarce. The aims of this study were to characterize the expression of genes related to GCs and insulin signaling pathways in cyclic canine CL and to identify differential expression of these genes between day 20 and day 60 of diestrus which correspond, respectively to luteal final growth and regression phases. Moreover to evaluate the basal concentrations of salivary cortisol (SC) and fecal glucocorticoid metabolites (FGMs) on different days of diestrus (10, 20, 30, 40, 50 e 60) in cyclic bitches, moreover to compare E2 and P4 levels already published. As well as to correlate the values of SC and FGMs, and also to establish an interval of basal concentrations of SC and FGMs for diestrus. For this research 28 healthy cyclic bitches were selected; RNA-Seq of the corpora lutea from 18 animals on specific days of diestrus (day 10, 20, 30, 40, 50, 60) was made. Saliva and fecal samples were collected from the other 10 bitches during diestrus phase. Enzyme immunoassay was made to measure the concentrations of SC and FGMs. The RNA-Seq results identified the expression of the genes NR3C1, HSD11B1, HSD11B2, SLC2A4, INSR e IRS1. No difference on the expression of NR3C1 (p>0,3; FDR>0,6) and SLC2A4 (p>0,02; FDR>0,1) was observed during diestrus. Nevertheless HSD11B1 (p=0,0001; FDR=0,0021), HSD11B2 (p=0,013; FDR=0,06), INSR (p=0,002; FDR=0,01) showed a higher expression on day 20 of diestrus and the gene IRS1 (p=0,0006; FDR= 0,006) presented higher expression on day 60 of diestrus. Results related to hormonal evatuations showed lower SC and FGMs concentrations on day 10th (SC=0,0656 ± 0,0237µg/dL and FGMs=110,41 ± 46,51pg/ng) than on the other days of diestrus (SC=0,1027 ± 0,0496 µg/dL e FGMs=220,22 ± 183,74 pg/ng). Average concentrations of SC=0,0972µg/dL (0,011-0,246µg/dL) and FGMs=189,875pg/ng (9pg/ng-1067,2pg/ng) were defined for canine diestrus. These data suggest that canine CL is influenced by cortisol similarly to other tissues in which cortisol may interfere in the insulin signaling pathway and, consequently, its function. Besides that, lower levels of SC and FGMs on day 10th of the diestrus corroborate with the literature data and with the decrease in E2 production at the same period. This data suggest that the production of both hormones are associated.

Le but de notre étude était de mettre en place une méthode qui puisse nous permettre d’identifier, en aveugle, des perturbateurs de voies biologiques, et qui soit d’une part généralisable pour toute espèce de poissons et d’autre part applicable quel que soit le cours d’eau considéré. Nous nous sommes intéressés aux gènes différentiellement exprimés dans le foie, en utilisant la technologie du séquençage Illumina de banques ADNc. Nous avons étudié trois espèces de cyprinidae (C. nasus, P. toxostoma, S. cephalus) dans le bassin de la Durance, servant à l’alimentation en eau de plusieurs millions de personnes. Nous avons mis en place une suite logicielle pour inférer un transcriptome pour chacune des trois espèces étudiées, et effectué un travail en bioinformatique pour l’identification des spécimens hybrides. Cette méthode nous permet d’assigner les 596 millions de séquences générées (293 spécimens) à l’une des trois espèces et à 16606 gènes identifiés. Les résultats biologiques montrent des variations de l’expression de gènes touchant des voies biologiques associées à des réponses aux xénobiotiques le long de l’axe amont-aval de la rivière. Ils montrent aussi que les spécimens échantillonnés dans le canal EDF présentent des réponses atténuées aux xénobiotiques par rapport aux individus en rivière. Ce résultat peut s’expliquer par l’effet de dilution des polluants dans une masse d’eau plus importante. Cette étude met en évidence les capacités adaptatives des populations de poissons à court terme, via des modifications de l’expression des gènes à un ensemble de perturbateurs environnementaux. Ce travail permet d’envisager la mise en place d’un outil de gestion incontournable. / The aim of our study was to establish a method that allows the identification (in blind) of biologicalpathway disrupters, for all species of fish and applicable regardless of the watercourse considered. Wefocused on differentially expressed genes (and the biological pathways in which they act) in the liver,using the Illumina sequencing technology of cDNA libraries. We studied three species of cyprinidae (C.nasus, P. toxostoma, S. cephalus) in the Durance basin that constitutes water resource for several millionpeople. We have implemented a pipeline to infer the transcriptome for each of the three species studied,and developed a bioinformatics framework for the identification of hybrid specimens. This methodallows us to assign the 596 million sequences generated (representing 293 specimens) to one of the threespecies and to 16,606 identified genes. The biological results display variations in the expression of genesaffecting biological pathways associated with xenobiotic responses (estrogens, Hap, heavy metals) alongthe upstream-downstream axis of the river. They also yield that the specimens sampled in the EDFchannel displayed an attenuated responses to xenobiotics, in comparison to individuals that inhabitethe river, possibly a benefit of the dilution effect of pollutants in a larger body of water. This studyhighlights short-term adaptive capacities (acclimation) of fish populations to a set of environmentaldisrupters via changes in gene expression levels. It will open a way to an essential tool for managementpolicies.

Inúmeros aspectos da reprodução em Apis mellifera já foram extensamente divulgados, no entanto, os mecanismos reguladores da manutenção do estado estéril das operárias, bem como aqueles que permitem a ativação de seus ovários, ainda estão para serem descobertos. Por exemplo, a organização dos folículos ovarianos em crescimento e a arquitetura e papel das células foliculares neste processo. Além disso, para compreender o processo de ativação dos ovários em um contexto mais amplo, também é necessária uma investigação da síntese e maturação de diferentes classes de RNAs as quais modelam redes de interações gênicas extremamente complexas. Portanto, neste doutorado, tivemos como objetivo realizar 1- uma análise morfológica dos ovários ativos de operárias de A. mellifera obtidos em condições orfandade, com ênfase nas células foliculares e 2- um estudo aprofundado da regulação da expressão gênica (genes estruturais e reguladores) que é de fundamental importância para ligar os genótipos aos fenótipos. A análise morfológica dos ovários de operárias de A. mellifera foi realizada em microscópio de fluorescência ou confocal (priorizou a contagem das células foliculares) e microscópio eletrônico de transmissão, que permitiu a descrição e caracterização, pela primeira vez, da patência em ovários de operárias A. mellifera. Paralelamente, por meio da técnica de RNAseq, foi possível analisar o transcriptoma (miRNAs e mRNAs) de amostras específicas de ovários, em diferentes estados fisiológicos, em rainhas e operárias. Os mRNAs e miRNAs que se destacaram em nossas análises in silico foram validados experimentalmente por RT-PCR com alto grau de reprodutibilidade e em harmonia com o estado fisiológico dos ovários. Os transcritos altamente expressos nos ovários ativados foram: fpps5, cad, obp7, yellow-g e aqueles representados pelo GB42182 e GB44975. Acreditamos estes genes possam fazer parte da rede que regula o processo de ativação dos ovários em A. mellifera. Os miRNAs que se destacaram em nossas análises foram: A) miR-306 e miR-317 - altamente expressos nas amostras de ovários funcionais e B) miR-71 pelo fato de, nas análises in silico, ser o mais forte candidato a alvejar a vitelogenina, e na análise experimental, apresentarem, microRNAs e mRNAs, perfis de expressão antagônicos. A construção de bibliotecas de microRNAs e mRNAs a partir de ovários funcionais e não funcionais de abelhas operárias e rainhas, a análise de expressão, bem como a predição de uma rede de integração nos deu um retrato do sensível equilíbrio reprodutivo que mantém ambas as castas em aparente harmonia dentro da colônia aonde elas assumem, no momento certo, seus papéis nesta sofisticada sociedade empreendendo ou não a reprodução. / Countless aspects of reproduction in Apis mellifera have been widely published, however, the regulatory mechanisms for the maintenance of the sterile state of workers as well as those that allow the activation of their ovaries are still to be discovered, as much as the organization of growing ovarian follicles, the architecture and the role of follicular cells during this process. Furthermore, to understand the activation process of the ovaries in a broader context, it is also necessary to investigate the synthesis and maturation of different classes of RNAs which exemplify networks of gene interactions, extremely complex. Therefore, PhD project, we aimed to approach: 1 - A morphological analysis of active ovaries of A. mellifera workers obtained in queenless conditions, with emphasis on the follicular cells and 2 - A detailed study of the regulation of gene expression (structural and regulatory genes) that is crucial for linking genotypes to phenotypes. Morphologic analysis of workers ovaries of A. mellifera was performed under a fluorescence microscope or confocal (prioritized follicular cell count) and transmission electron microscope, which allowed, for the first time, a description and characterization of the patency of worker ovaries in A. mellifera. Similarly, by RNAseq technique, it was possible to analyze the transcriptome (miRNAs and mRNAs) of specific samples of ovaries at different physiological states, in queens and workers. mRNAs and miRNAs that stood out in our in silico analysis were experimentally validated by RT-PCR with high reproducibility and in harmony with ovaries physiologic state. Transcripts highly expressed in activated ovaries were fpps5, cad, obp7, yellow-g and those represented by GB42182 and GB44975. We believe these genes may be part of the network that regulates ovaries activation process in A. mellifera. miRNAs that stood out in our analysis were: - a) - miR-306 and miR-317 - highly expressed in samples of active ovaries and b) -miR-71 by the fact that the in silico analysis, was the strongest candidate to target vitellogenin, and in experimental analysis, presented antagonistic profile of expression when microRNAs and mRNAs were contrasted. The construction of microRNAs and mRNAs libraries from active and inactive ovaries of worker bees and queens, the analysis expression, as well as the prediction of a integrative network has given us a portrait of the sensitive reproductive balance that keeps both castes of bees in apparent harmony within the colony, where they take each one, at the right time, their roles in this sophisticated society, undertaking or not the reproduction.

Em eucariotos, o DNA é organizado juntamente com histonas em um complexo nucleoproteico conhecido como cromatina, cuja unidade fundamental corresponde aos nucleossomos. A cromatina apresenta-se de duas maneiras: eucromatina, região estruturalmente menos condensada e, portanto, mais facilmente transcrita, e heterocromatina, região muito condensada e transcricionalmente silenciosa. Na forma de eucromatina, o acesso dos fatores de transcrição a regiões de DNA livres de nucleossomos é facilitado, enquanto que na forma de heterocromatina os fatores de transcrição não conseguem acessar o DNA para ativar ou reprimir a expressão gênica inferindo, assim, que o grau de compactação da cromatina interfere na regulação da expressão gênica e que o nucleossomo atua como silenciador gênico. Neste contexto, os objetivos foram identificar, mapear e caracterizar regiões em eucromatina na musculatura esquelética de bovinos da raça Nelore. As análises foram realizadas em relação ao músculo Longissimus dorsi pela técnica Assay for Transposase-Accessible Chromatin (ATAC-Seq), capaz de isolar regiões livres de nucleossomos a partir do mecanismo enzimático de transposição. A fim de otimizar o protocolo dessa metodologia para tecido muscular, foram testadas concentrações de 50 mil, 75 mil e 100 mil núcleos tratados com transposase. Destes, foram encontrados 6.811, 11.121 e 11.473 picos de eucromatina, respectivamente, e 6.212 regiões de cromatina aberta foram coincidentes nas três amostras. A associação entre regiões eucromáticas, expressão gênica e gordura intrasmuscular foi confirmada a partir da análise de sobreposição com transcriptional start sites (TSS), genes expressos em músculo esquelético, genes diferencialmente expressos (GDE) para gordura intramuscular e regiões de expression quantitative trait loci (eQTL) de tecido muscular reforçando, assim, o potencial regulatório das regiões de eucromatina. / In eukaryotes, DNA is organized along with histones in nucleoproteins complexes known as chromatin, which has nucleosomes as their fundamental unit. Chromatin exists in two forms: euchromatin, corresponding to a lightly condensed structure and an easily transcribed region, and heterochromatin, a highly condensed and transcriptionally silent region. In euchromatin form, transcription factors have free access to nucleosome-depleted DNA regions, while in heterochromatin the transcription factors can not access the DNA for activate or repress genic expression, which suggests that the chromatin compaction degree interferes with regulation of gene expression and that nucleosomes act as gene silencer. In this context, the aims of the present project were to identify, map and characterize euchromatin regions in the skeletal musculature of Nellore cattle. Analyzes were performed considering the muscle Longissimus dorsi using Assay for Transposase-Accessible Chromatin technique (ATAC-Seq), which isolates nucleosome-depleted regions throught transposition enzymatic mechanism. Differente transposase-treated nuclei concentrations were tested: 50 thousand, 75 thousand and 100 thousand. From these, 6.811, 11.121, and 11.473 euchromatin peaks were found, respectively, and 6.212 open chromatin regions were coincident among them. The association between euchromatic regions, gene expression and intrasmuscular fat was confirmed from the overlap analysis with transcriptional start sites (TSS), genes expressed in skeletal muscle, differentially expressed genes (GDE) for intramuscular fat and regions of expression quantitative trait loci (eQTL) of muscle tissue, reinforcing the regulatory potential of the euchromatin regions.