The paralogous multi-functional adaptor proteins YAP and TAZ are nuclear effectors of the Hippo pathway, a central regulator of developmental organ size control, tissue homeostasis and tumour suppression. YAP/TAZ target the TEAD transcription factor family to promote cell survival and inhibit apoptosis. TEAD proteins contain a DNAbinding domain and a YAP/TAZ interaction domain. PCR analysis of medaka fish TEAD cDNA revealed the presence of alternative TEAD splice-forms with variations at the C-terminus of the DNA-binding domain. Structural analysis indicated the YAPbinding domain of TEAD proteins is folded and globular. NMR spectroscopy showed that the TEAD binding domain of YAP does not contain secondary structure. YAP and TAZ both contain WW domains, which are small protein-protein interaction modules. Two YAP isoforms are known, YAP1 and YAP2 that contain one and two WW domains, respectively. To date, only a single WW isoform of TAZ has been described. PCR analysis of medaka TAZ cDNA identified both single WW and tandem WW isoforms of TAZ. NMR spectroscopy was used to characterise structural, conformational, and peptide binding features of the tandem WW domains from YAP and TAZ. The YAP WW2 solution structure confirms that the domain has the canonical anti-parallel β-sheet WW fold. WW1 of YAP and both WW domains of TAZ undergo conformational exchange. The region linking the two WW domains is flexible and allows interaction of both WW domains with peptides containing single and dual PPxY binding motifs. In addition to YAP and TAZ, tandem WW domains are also present in the core and upstream Hippo pathway proteins Salvador and Kibra. Both proteins contain one atypical WW domain; the tandem WW domains of these two proteins are unstable. Understanding structure and function of Hippo pathway components could contribute to drug development and will also contribute to knowledge of protein folding and interactions.

abstract: Cyanovirin-N (CVN) is a cyanobacterial lectin with potent anti-HIV activity, mediated by binding to the N-linked oligosaccharide moiety of the envelope protein gp120. CVN offers a scaffold to develop multivalent carbohydrate-binding proteins with tunable specificities and affinities. I present here biophysical calculations completed on a monomeric-stabilized mutant of cyanovirin-N, P51G-m4-CVN, in which domain A binding activity is abolished by four mutations; with comparisons made to CVN<super>mutDB</super>, in which domain B binding activity is abolished. Using Monte Carlo calculations and docking simulations, mutations in CVN<super>mutDB</super> were considered singularly, and the mutations E41A/G and T57A were found to impact the affinity towards dimannose the greatest. <super>15</super>N-labeled proteins were titrated with Man&#945;(1-2)Man&#945;, while following chemical shift perturbations in NMR spectra. The mutants, E41A/G and T57A, had a larger Kd than P51G-m4-CVN, matching the trends predicted by the calculations. We also observed that the N42A mutation affects the local fold of the binding pocket, thus removing all binding to dimannose. Characterization of the mutant N53S showed similar binding affinity to P51G-m4-CVN. Using biophysical calculations allows us to study future iterations of models to explore affinities and specificities. In order to further elucidate the role of multivalency, I report here a designed covalent dimer of CVN, Nested cyanovirin-N (Nested CVN), which has four binding sites. Nested CVN was found to have comparable binding affinity to gp120 and antiviral activity to wt CVN. These results demonstrate the ability to create a multivalent, covalent dimer that has comparable results to that of wt CVN. WW domains are small modules consisting of 32-40 amino acids that recognize proline-rich peptides and are found in many signaling pathways. We use WW domain sequences to explore protein folding by simulations using Zipping and Assembly Method. We identified five crucial contacts that enabled us to predict the folding of WW domain sequences based on those contacts. We then designed a folded WW domain peptide from an unfolded WW domain sequence by introducing native contacts at those critical positions. / Dissertation/Thesis / Doctoral Dissertation Biochemistry 2014

Diese aus drei verschiedenen Studien bestehende Arbeit trägt mittels Verknüpfung von Anatomie (Struktur) und Physiologie oder Verhalten (Funktion) zu einem besseren Verständnis von somatosensorischer Informationsverarbeitung bei. In der ersten Studie untersuchten wir wie das Nervensystem der Ratte sich an das kontinuierliche Nachwachsen und Ausfallen der Tasthaare anpasst. Unsere Ergebnisse zeigen, dass Barrel-Kortex Neurone nach Auslenkung von sowohl jungen oder alten Tasthaaren ähnliche neuronale Antworten aufweisen. Wir konnten auch beobachten, dass junge und alte Tasthaare gemeinsam im Follikel innerviert werden und im Kortex nicht separat topologisch repräsentiert sind. Diese Ergebnisse könnten erklären wie die Stabilität von Wahrnehmung während fortlaufenden körperlich-sensorischen Veränderungen gewährleistet wird. In der zweiten Studie identifizierten wir Details der kortikalen Nasen Repräsentation und konnten zeigen, dass die Organisation von Schicht 4 im Somatosensorischen Kortex in Nagetieren konserviert ist. Wir fanden auch eine Kopplung von Nervenzellaktivität mit der Atmung, was für eine koordinierte Verarbeitung von Tastsinn und Atmung im Nasen-Somatosensorischen Kortex spricht. In der dritten Studie charakterisierten wir die kortikale Repräsentation der Schnauze im Hausschwein und konnten zeigen, dass dessen makroskopische, drei-dimensionale Erscheinung viele Details aufweist, die auch bei der tatsächlichen Schnauze zu finden sind. Ähnlich wie bei unseren histologischen Beobachtungen im Nasen- Somatosensorischen Kortex von Nagern konnten wir im Hausschwein Kortex eine Verjüngung von Schicht 4 der mutmaßlichen Repräsentation des Nasenlochs beobachten. Zusammengefasst zeigt diese Arbeit i) einen potentiellen Mechanismus für Kontinuität der Wahrnehmung während körperlichen Veränderungen ii) Details der kortikalen Nasen-Repräsentation und dessen Verhältnis zur Atmung und iii) isomorphe Eigenschaften der kortikalen Schnauzen-Repräsentation im Hausschwein. / Topological mapping of body part representations in the brain have long been studied in neuroscience. In this thesis, three separate studies investigate such somatosensory representations by relating anatomy (structure) to physiology or behavior (function). In the first study we investigated whether and how the rat nervous system adapts to whiskers regrowth. We found that barrel cortex neurons displayed similar response properties to young and old whisker deflection and that both whiskers share their peripheral innervation in the same follicle. Our results further suggest that young and old whiskers do not form topologically distinct representations in the cortex. Such findings illuminate how perceptual stability is maintained despite the constant change of bodies and sensory structures. In the second study we identified the rodent nose somatosensory cortex and found that its tangential layer 4 organization is conserved across rodents. We also found significant respiration locked neural activity in the rat nose somatosensory cortex, suggesting coordinated processing of touch and respiration. In the third study we characterized the pig rostrum somatosensory cortex and found that its three-dimensional, gross organization matches the detailed structure of the actual rostrum appearance. We also found that layer 4 appears thinner in the putative nostril, similar to our results in the rodent nose somatosensory cortex. Collectively, our data i) reveal potential mechanisms for perceptual stability during bodily changes ii) identify the rodent nose somatosensory cortex and its relationship to respiration and iii) a striking isomorphism of the pig cortical rostrum representation with the pig snout.

京都大学 / 0048 / 新制・課程博士 / 博士(理学) / 甲第18095号 / 理博第3973号 / 新制||理||1573(附属図書館) / 30953 / 京都大学大学院理学研究科化学専攻 / (主査)教授 三木 邦夫, 教授 杉山 弘, 教授 秋山 芳展 / 学位規則第4条第1項該当 / Doctor of Science / Kyoto University / DGAM

No description available.

Cette thèse présente le mesure des sections efficaces de production WW MS et la détermination des couplages triples (TGCs) correspondants en utilisant ces 4.7 ${rm fb}^{-1}$ de donnes 2011 de collision $pp$. Ces mesures permettent un test contraignant du secteur 'électrofaible non abélien $SU(2) times U(1)$ du Modèle Standard; donnent l'opportunité de sonder la nouvelle physique `a travers les couplages triples anormaux de bosons de jauge (aTGCs) qui seront observés dans la distribution des variables cinématiques des WW produits ou de leurs produits de désintégration finaux dans le secteur de haute 'énergie; et permettent d'avoir une bonne compréhension du bruit de fond irréductible dans la recherche du boson de Higgs dans le canal de d'esint'egration $H rightarrow W^{+}W^{-}$.Ce travail de th`ese donne un base solide pour les mesures `a venir de la production WW avec les $sim$25 ${rm fb}^{-1}$ de luminosité intègré de donnes a 8 TeV prévue pour la fin 2012, qui conduiront vers une amélioration de la précision et des limites plus strictes sur les aTGCs. / This thesis presents a measurement of the SM WW production cross section and the determination of the corresponding limits on anomalous triple gauge boson couplings (aTGCs), using the 2011 4.7 ${rm fb}^{-1}$ $pp$ collisions data at 7 TeV collected in 2011. The measurement allows for a stringent test of the non-Abelian $SU(2) times U(1)$ SM electroweak sector and probes new physics that could manifest itself through aTGCs that may alter the observed production cross section or kinematic distributions. This measurement also provides a good understanding of the irreducible background in searches for the Higgs boson through the $Hrightarrow W^{+}W^{-}$ decay channel.This thesis work has laid a solid foundation for further measurements of the WW production with the $sim$25 ${rm fb}^{-1}$ integrated luminosity 8 TeV recorded data expected by the end of 2012, which will further improve the precision and yield more stringent limits on the aTGCs.

Komplexe kognitive Funktionen wie Gedächtnisbildung, Navigation und Entscheidungsprozesse hängen von der Kommunikation zwischen Hippocampus und Neokortex ab. An der Schnittstelle dieser beiden Gehirnregionen liegt der entorhinale Kortex - ein Areal, das Neurone mit bemerkenswerten räumlichen Repräsentationen enthält: Gitterzellen. Gitterzellen sind Neurone, die abhängig von der Position eines Tieres in seiner Umgebung feuern und deren Feuerfelder ein dreieckiges Muster bilden. Man vermutet, dass Gitterzellen Navigation und räumliches Gedächtnis unterstützen, aber die Mechanismen, die diese Muster erzeugen, sind noch immer unbekannt. In dieser Dissertation untersuche ich mathematische Modelle neuronaler Schaltkreise, um die Entstehung, Weitervererbung und Verstärkung von Gitterzellaktivität zu erklären. Zuerst konzentriere ich mich auf die Entstehung von Gittermustern. Ich folge der Idee, dass periodische Repräsentationen des Raumes durch Konkurrenz zwischen dauerhaft aktiven, räumlichen Inputs und der Tendenz eines Neurons, durchgängiges Feuern zu vermeiden, entstehen könnten. Aufbauend auf vorangegangenen theoretischen Arbeiten stelle ich ein Einzelzell-Modell vor, das gitterartige Aktivität allein durch räumlich-irreguläre Inputs, Feuerratenadaptation und Hebbsche synaptische Plastizität erzeugt. Im zweiten Teil der Dissertation untersuche ich den Einfluss von Netzwerkdynamik auf das Gitter-Tuning. Ich zeige, dass Gittermuster zwischen neuronalen Populationen weitervererbt werden können und dass sowohl vorwärts gerichtete als auch rekurrente Verbindungen die Regelmäßigkeit von räumlichen Feuermustern verbessern können. Schließlich zeige ich, dass eine entsprechende Konnektivität, die diese Funktionen unterstützt, auf unüberwachte Weise entstehen könnte. Insgesamt trägt diese Arbeit zu einem besseren Verständnis der Prinzipien der neuronalen Repräsentation des Raumes im medialen entorhinalen Kortex bei. / High-level cognitive abilities such as memory, navigation, and decision making rely on the communication between the hippocampal formation and the neocortex. At the interface between these two brain regions is the entorhinal cortex, a multimodal association area where neurons with remarkable representations of self-location have been discovered: the grid cells. Grid cells are neurons that fire according to the position of an animal in its environment and whose firing fields form a periodic triangular pattern. Grid cells are thought to support animal's navigation and spatial memory, but the cellular mechanisms that generate their tuning are still unknown. In this thesis, I study computational models of neural circuits to explain the emergence, inheritance, and amplification of grid-cell activity. In the first part of the thesis, I focus on the initial formation of grid-cell tuning. I embrace the idea that periodic representations of space could emerge via a competition between persistently-active spatial inputs and the reluctance of a neuron to fire for long stretches of time. Building upon previous theoretical work, I propose a single-cell model that generates grid-like activity solely form spatially-irregular inputs, spike-rate adaptation, and Hebbian synaptic plasticity. In the second part of the thesis, I study the inheritance and amplification of grid-cell activity. Motivated by the architecture of entorhinal microcircuits, I investigate how feed-forward and recurrent connections affect grid-cell tuning. I show that grids can be inherited across neuronal populations, and that both feed-forward and recurrent connections can improve the regularity of spatial firing. Finally, I show that a connectivity supporting these functions could self-organize in an unsupervised manner. Altogether, this thesis contributes to a better understanding of the principles governing the neuronal representation of space in the medial entorhinal cortex.

Eine einzigartige experimentelle Beobachtung, welche die Basis für eine ganzheitliche, neurowissentschafliche Theorie für Gedächtnis darstellen könnte, sind sharp wave-ripples (SWRs). SWRs werden in lokalen Neuronennetzwerken erzeugt und sind wichtig für Gedächtniskonsolidierung; SWRs sind charakteristische Ereignisse der lokalen Feldpotentiale im Hippocampus des Säugetiers, die in Phasen von Schlaf und Ruhe vorkommen. Eine SWR besteht aus einer sharp wave, einer ≈ 100 ms langen Auslenkung des Feldpotentials, welche mit ripples, 110–250 Hz Oszillationen, überlagert ist. Jüngste Experimente bekräftigen die Theorie, dass ripples in Netzwerken inhibitorischer Interneurone (INT-INT) erzeugt werden, die aus parvalbumin-positive basket cells (PV+BCs) bestehen. PV+BCs sind untereinander über rekurrente inhibitorische Synapsen und Gap Junctions (GJs) gekoppelt. In dieser Arbeit untersuche ich die spezifische Funktion von interneuronalen Gap Junctions in ripples. Im Hauptteil dieser Arbeit demonstriere ich, dass GJs in INT-INT Netzwerken die neuronale Synchronität und die Feuerrate während ripples erhöhen, die ripple-Frequenz sich hingegen nur leicht verändert. Zusätzlich zeige ich, dass diese rippleunterstützenden Effekte nur dann auftreten, wenn die GJ-Transmission schnell genug ist (≈< 0.5 ms), was wiederum somanahe Kopplung voraussetzt (≈< 100 µm). Darüber hinaus zeige ich, dass GJs die oszillatorische Stärke der ripples erhöhen und so die minimale für ripples notwendige Netzwerkgröße verringern. Abschließend zeige ich, dass ausschließlich mit Gap Junctions gekoppelte INT-INT Netzwerke zwar mit ripple Frequenz oszillieren können, aber wahrscheinlich nicht der Erzeuger von experimentell beobachteten ripple-artigen Oszillationen sind. Zusammengenommen zeigen meine Resultate, dass schnelle Gap Junction-Kopplung von Interneuronen die Entstehung von ripples begünstigt und somit SWRs unterstützt, welche einen wichtigen Beitrag zur Bildung unserers Gedächtnisses leisten. / A unique experimental observation that opens ways for a holistic, bottom-up theory for memory generation are sharp-wave ripples (SWRs). SWRs are generated in local neuronal networks and are important for memory consolidation. SWRs are prominent features of the extracellular field potentials in the mammalian hippocampus that occur during rest and sleep; they are characterized by sharp waves, ≈ 100 ms long voltage deflections, that are accompanied by ripples, i.e., 110–250 Hz oscillations. Recent experiments support the view that ripples are clocked by recurrent networks of inhibitory interneurons (INT-INT), which are likely constituted by networks of parvalbumin-positive basket cells (PV+BCs). PV+BCs are not only recurrently coupled by inhibition but also by gap junctions (GJs). In this thesis, I investigate the specific function of interneuronal GJs in hippocampal ripples. Consequently, I simulate INT-INT networks and demonstrate that gap junctions increase the neuronal synchrony and firing rates during ripple oscillations, while the ripple frequency is only affected mildly. I further show that GJs only have these supporting effects on ripples when they are sufficiently fast (≈< 0.5 ms), which requires proximal GJ coupling (≈< 100 µm). Additionally, I find that gap junctions increase the oscillatory power of ripple oscillations and by this means reduce the minimal network size required for INT-INT networks to generate ripple oscillations. Finally, I demonstrate that exclusively GJ-coupled INT-INT networks can oscillate at ripple frequency, however, are unlikely the generator of experimentally observed ripple-like oscillations. In sum, my results show that fast interneuronal gap junction coupling promotes the emergence of ripples and hereby supports SWRs, which are important for the formation of memory.

Hippokampale Sharp Wave-Ripples (SWRs) sind elektrografische Ereignisse, die für die Konsolidierung von Erinnerungen eine Rolle spielen. Eine SWR ist durch eine schnelle Oszillation (>90 Hz, ''ripple'') charakterisiert, die sich mit der langsameren ''sharp wave'' ( / Hippocampal sharp wave-ripples (SWRs) are electrographic events that have been implicated in memory consolidation. A SWR is characterized by a fast (> 90 Hz) oscillation, the ripple, superimposed on a slow (< 30 Hz) sharp wave. In vivo, the fast component can express frequencies either in the ripple range (140-200 Hz) or fast-gamma range (90-140 Hz). Episodes in both bands exhibit intra-ripple frequency accommodation (IFA). In vitro, ripples are frequency-resistant to GABA modulators. These features constrain the type of mechanisms underlying the generation of the fast component. A prominent hypothesis proposes that a recurrent network of parvalbumin-immunoreactive basket cells (PV+BC) is responsible of setting the ripple frequency. The focus of the present thesis is on testing to which extent the PV+BC network can account for the aforementioned features of SWRs, which remain unexplained. Here, I simulated and analyzed a physiologically constrained in silico model of the PV+BC network in CA1 under different conditions of excitatory drive. The response of the network to transient excitation exhibits both IFA in the ripple band and frequency resistance to GABA modulators. The expression of IFA in the fast gamma band requires the involvement of pyramidal cells in a closed loop with the PV+BC network. The model predicts a peculiar relationship between the instantaneous frequency of ripples and the time course of the excitatory input to CA1. This prediction was confirmed in an in vitro model of SWRs. Additionally, I study the involvement of oriens lacunosum-moleculare interneurons (O-LM) during SWRs in vitro. I characterize the excitatory currents received by O-LM cells during SWRs and investigate the factors that determine their recruitment.

No description available.