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  • About
  • The Global ETD Search service is a free service for researchers to find electronic theses and dissertations. This service is provided by the Networked Digital Library of Theses and Dissertations.
    Our metadata is collected from universities around the world. If you manage a university/consortium/country archive and want to be added, details can be found on the NDLTD website.
171

Primer tRNA annealing by human immunodeficiency virus type 1

Jones, Christopher P. 25 June 2012 (has links)
No description available.
172

Correlation effects in the 5f states of uranium intermetallics probed with x-ray spectroscopies

Marino, Andrea 15 April 2024 (has links)
In strongly correlated electron systems the intricate interplay between electronic correlation effects and the tendency to form bands leads to a wealth of fascinating physical phenomena. The theoretical description of such systems is extremely complex and cannot be tackled exactly, so that ingenious modelling based on approximations must be utilized. Experiments are of utmost importance in this regard, since they provide a way to test and verify models, or to help devise better ones. This Dissertation deals with strongly correlated uranium intermetallic systems. The interesting phases they can adopt include heavy fermion behaviour, unconventional superconductivity, hidden and multipolar order, and exotic induced magnetism. Here the hybridization between the 5f states and the conduction electrons drives the physics. The description of the 5f states is therefore of utmost importance. However, since there is no clear hierarchy of interactions like Coulomb repulsion, spin-orbit coupling, hopping and crystal-field, the modelling is difficult. This is in strong contrast to the more spatially localized 4f states of, e.g., cerium compounds. It is far from clear how to quantitatively describe the electronic structure of uranium intermetallics and whether, for example, an itinerant band approach or an impurity-type model, taking local degrees of freedom explicitly into account, would be a better starting point. In intermetallics, the situation is aggravated by the fact that the modelling lacks important pieces of information. This is not least due to the fact that understanding the formal valence, the filling of the 5f shell, and the relevant symmetries of the $5f$ electrons are experimentally demanding tasks. This Dissertation, therefore, aims at developing new methods and Ans\'atze in this direction. We use x-ray spectroscopy to investigate the electronic structure, and in particular element-specific Inelastic X-ray Scattering (IXS); resonant (RIXS) at the U M(5) edge and non-resonant (NIXS) at the U O(4,5) edge. Both methods are innovative. For the first time, valence band RIXS measurements with sufficient resolution (150 meV) can be carried out at the U M(5) edge to measure ff excitations in intermetallic uranium compounds. Their existence, if present, provides information about the formal valence or main atomic configuration that determines the symmetry. The orientation dependence of the mutipolar excitations in NIXS (with restrictions also in RIXS), in turn, provides information about the orbital occupation. Atomic full-multiplet calculations are indispensable here. In addition, photoelectron spectroscopy (PES) is applied, both in the soft as well as in the hard x-ray regime (HAXPES), to investigate the hybridization and localization of the 5f electrons. The energy dependence of the cross-sections allows to determine the orbital contributions in the valence band, so that parameters like, e.g., the double-counting correction for the LDA+DMFT calculations, performed by Prof. A. Hariki from the Osaka Metropolitan University, can be determined from tuning the calculations to the experimental data. This combination of PES and DFT+DMFT provides a reliable new quantitative insight into the number of electrons in the 5f shell and their degree of delocalization. We consider UGa(2) and UB(2), respectively, as benchmark localized and itinerant systems and investigate them with IXS and PES. UGa(2) is a high-moment ferromagnet, with U-U distances above the Hill limit, while UB(2) is paramagnetic and clearly below the Hill limit. We observe sharp multiplet excitations of the 5f2 configuration in the IXS spectra of UGa(2), but none in the spectra of UB(2). The comparison of the spectra with full-multiplet calculations shows that in UGa(2) the U 5f2 configuration dominates and, from the orientation dependence (RIXS and NIXS), the crystal-field ground state can be determined. We show that the magnetism of this compound is of the induced type. The cross-section based analysis of the valence band PES data with the LDA+DMFT approach shows that the filling of the 5f shell is similar in both compounds, but that the distribution among different configurations is considerably wider in UB(2). Also the time-dependent charge correlation functions of UGa(2) and UB(2) show a larger itinerancy in the latter compound. The peculiarity and novelty about this combined study is that a reliable quantitative description of the electronic structure is achieved. This allows, for the first time, an accurate estimation of the 5f occupation and a quantitative description of the U\ 4f core-level PES spectra. This study paves the way to a systematic classification of uranium intermetallics. We further investigate the substitution series URu(2-x)Fe(x)Si(2) with PES. The systematic study of isostructural and/or isoelectronic series of compounds is crucial in unveiling the origin of their physical properties. URu(2)Si(2) exhibits hidden-order as well as superconductivity, and becomes antiferromagnetic upon Fe doping. Fe substitution seemingly involves the application of chemical pressure to the system. We measure the U 4f PES core-level of the URu(2-x)Fe(x)Si(2) substitution series and observe a non-monotonic shift of spectral weight. We argue that, besides chemical pressure, the Fe density of states at the Fermi level also plays a central role and we propose and extended Doniach diagram where the two effects compete. We also measure NIXS, confirming that the ground state symmetry is a singlet or quasi-doublet of the 5f2 configuration. The magnetic properties must then be understood, as in UGa(2), in terms of induced magnetism. We extend our study of the UT(2)Si(2) compounds to the case where T = Os, Ir, Pt and Au, i.e. 5d transition metals. Although the T= 3d and 4d transition metal systems have been extensively investigated, the T = 5d compounds lack systematic studies. The comparison of the NIXS spectra with multiplet calculations shows that also here the 5f2 dominates, only for T= Au it is not so clear. The absence of a strong directional dependence impairs the identification of the ground state symmetry. Valence band hard x-ray PES allows to probe the transition metal 5d states directly. U 4f core-level hard x-ray PES gives a qualitative indication of the filling of the 5f shell across the series. We then focus on hexagonal UNi(2)Al(3) and apply NIXS. Like isoelectronic and isostructural UPd(2)Al(3), it is a prototypical U heavy-fermion compound, showing antiferromagnetic order and unconventional superconductivity. We observe a strong directional dependence of the NIXS spectra at low temperatures. The possible ground-state symmetries of the 5f2 configuration that fit the NIXS data are in contradiction to previous proposals from fits of the static magnetic susceptibility. We put forward a new crystal-field model that describes the high temperature magnetic susceptibility and the NIXS data at low temperatures, and that explains the magnetism.
173

Traceable Characterization of Complex-Shaped Nanoparticles using Small-Angle X-Ray Scattering

Deumer, Jérôme Emin 10 January 2025 (has links)
Die Charakterisierung von Nanopartikeln (NP) ist in vielen Bereichen des Lebens von großer Bedeutung. Um die Eigenschaften von NP zu bestimmen, stehen der Wissenschaft heute diverse Messmethoden zur Verfügung. Besonders geeignet für die Messung von NP ist die Röntgenkleinwinkelstreuung (SAXS), da sie Partikelensembles zerstörungsfrei und mit minimaler Probenpräparation in ihrer natürlichen Umgebung charakterisieren kann. SAXS liefert statistisch relevante Informationen, wie Größenverteilung und Anzahlkonzentration. In Kombination mit Synchrotronstrahlung können SAXS-Experimente in einem breiten Energiebereich mit hoher Brillanz und bekannter, auf SI-Einheiten (Internationales Einheitensystem) rückgeführter Strahlungsleistung durchgeführt werden, was eine rückführbare und zuverlässige Messung ermöglicht. Trotz der Vorteile von SAXS fehlten bislang praktische Auswertemethoden für die Charakterisierung der zunehmenden Vielfalt von Partikelformen. Die Verwendung analytischer Formfaktoren zur Berechnung der Streukurve eines komplex geformten Partikels ist schwierig, da sie die Berechnung der Fourier-Transformation der Elektronendichteverteilung des Partikels erforderlich macht. Zudem erschwert die isotrope Orientierung von NP in Suspension die Berechnung und erhöht den Rechenaufwand. Mit dieser Dissertation wird daher ein numerischer Ansatz vorgestellt, der es ermöglicht, NP beliebiger Form mit SAXS zu charakterisieren. Dieser Ansatz basiert auf der Berechnung der Debye-Gleichung und verwendet numerische Approximationen, um den Rechenaufwand zu minimieren. Durch die Kombination mit statistischen Auswertemethoden wie Markov Chain Monte Carlo können darüber hinaus Unsicherheitsbudgets umfassend abgeschätzt werden. / The characterization of nanoparticles (NPs) is of great importance in many areas of life. To determine the properties of NPs, various measurement methods are available to science today. Small-angle X-ray scattering (SAXS) is particularly suitable for measuring NPs, as it can characterize particle ensembles non-destructively and with minimal sample preparation in their natural environment. SAXS provides statistically relevant information such as size distribution and number concentration. In combination with synchrotron radiation, SAXS experiments can be performed in a wide energy range with high brilliance and known radiation power traceable to SI (International System of Units) units, which enables traceable and reliable measurements. However, despite the advantages of SAXS, there is a lack of practical evaluation methods for characterizing the increasing variety of particle shapes. The use of analytical form factors to calculate the scattering curve of a single particle is difficult as it requires the calculation of the Fourier transform of the electron density distribution of the particle. In addition, the isotropic orientation of NPs in suspension complicates the calculation and increases the computational effort. This dissertation therefore presents a numerical approach that enables NPs of arbitrary shape to be characterized using SAXS. This approach is based on the calculation of the Debye equation and uses numerical approximations to minimize the computational effort. By combining it with statistical evaluation methods such as Markov Chain Monte Carlo, uncertainty budgets can be comprehensively estimated.
174

Multi-scale characterization of deformation mechanisms of bulk polyamide 6 under tensile stretching below and above the glass transition / Caractérisation multi-échelle des mécanismes de déformation du polyamide 6 massif en traction au-dessus et au-dessous de sa transition vitreuse

Millot, Coraline 07 April 2015 (has links)
Notre étude a porté sur la compréhension microscopique des mécanismes de déformation du polyamide 6 (PA6) à l’état massif. Par des traitements thermiques appropriés, on a obtenu un jeu d’échantillons présentant des microstructures semi-cristallines variées, avec différentes formes cristallographiques (allotropes : α, γ ou β), différents taux de cristallinité (de 24 à 35%), différentes périodes de l’empilement des lamelles cristallines (de 7 à 12nm), ceci pour deux masses moléculaires différentes. Les propriétés mécaniques en traction ont été caractérisées au-dessus et au-dessous de la transition vitreuse de la phase amorphe (Tg). Les différents matériaux présentent des différences notables de comportements. Le taux de cristallinité semble être le facteur prédominant au-dessus de Tg, mais d’autres facteurs sont à prendre en compte en dessous de Tg, comme la forme cristalline et la morphologie lamellaire (épaisseur et facteur de forme). Grâce à un dispositif expérimental fabriqué sur mesure, des essais de traction ont été suivis par diffusion des rayons X aux petits (SAXS) et grands angles (WAXS) sur la ligne D2AM, ESRF, pour caractériser les déformations à l’échelle des empilements lamellaires et à l’échelle de la maille cristalline. Dans les échantillons présentant principalement de la phase cristalline β, les lamelles tendent à s’orienter perpendiculairement à la direction de traction (TD). Ce mécanisme d’orientation local (que nous appelons « modèle de réseau de chaînes ») est induit par la transmission des contraintes par les chaînes amorphes reliant les lamelles cristallines adjacentes. L’allongement local est plus faible que l’allongement macroscopique dans les lamelles perpendiculaire à TD, ce qui implique que les lamelles inclinées doivent être cisaillées. De plus, la phase β se transforme en phase α aux fortes extensions. Dans les échantillons présentant principalement de la phase α (la plus rigide), au-dessus de Tg, dans le régime élastique, les chaînes tendent d’abord à s’orienter perpendiculairement à TD, ce qui implique que les lamelles s’orientent parallèlement à TD (« modèle de lamelles rigides »). Ensuite, dans le régime plastique, une majeure partie des lamelles se réoriente perpendiculairement à TD, comme dans le « modèle de réseau de chaînes », tandis qu’une fraction mineure reste orientée parallèlement à TD. Une morphologie fibrillaire fortement orientée est finalement obtenue pour tous les échantillons quelle que soit la température. / Mechanical properties of bulk polyamide 6 (PA6) have been studied in relation to microscopic deformation mechanisms. By applying various thermal treatments, sets of samples with different semi-crystalline microstructures, namely various crystalline allotropic forms (denoted α, γ and β) and different values of the crystallinity index (from 24 to 35%) and of the long period of the lamellar stacks (from 7 to 12 nm), have been obtained, for two different molecular masses. Mechanical properties have been measured in the linear (viscoelastic) and nonlinear (plastic) regimes below and above the glass transition of the amorphous phase (Tg). Differences of behavior have been observed depending on the microstructure. While the crystallinity index seems to be the predominant factor affecting the mechanical behavior above Tg, other structural parameters such as the crystalline form and the lamellar morphology (thickness and aspect ratio) have to be taken into account below Tg. Deformations at the scales of lamellar stacks and of the crystalline unit cell have been characterized by small and wide angle X-ray scattering (SAXS and WAXS) performed in-situ during tensile tests. In samples with predominantly β phase, lamellae tend to orient perpendicular to the tensile direction (TD). This orientation mechanism (which we denote as ‘Chain Network model’) is driven by the amorphous chains which transmit the stress between adjacent lamellae. The tensile strain in lamellar stacks perpendicular to TD is lower than the macroscopic tensile strain, which must be compensated by increased shear in inclined stacks. Also, at high extension ratios, the β phase transforms into α phase. In samples with predominantly α phase and above Tg, morphology changes are more complex. In a first step, chains orient perpendicular to TD, which implies that lamellar planes tend to orient parallel to TD, possibly due to their high aspect ratio (denoted as ‘Rigid Lamella’ model). In a second step, beyond the yield, a major fraction of crystallites then reorients normal to TD, i.e. chains themselves become parallel to TD, while a minor fraction remains oriented along TD. A highly oriented fibrillar morphology is ultimately obtained in all cases.
175

Generation of biohybrid (poly(ionic liquid)/guar)-based materials / Génération de matériaux biohybrides (poly (liquide ionique)/guar)

Zhang, Biao 31 May 2016 (has links)
Ce travail de thèse a visé la préparation de matériaux biohybrides à base de poly (liquide ionique)s (PIL) et de polysaccharide, en l’occurrence la gomme de guar. Les chaînes de poly (1- [2-acryloyl éthyl] -3 bromure-méthylimidazolium (poly (AEMIBr)) ont été synthétisées par polymérisation contrôlée de type RAFT. Des homopolymères de DP élevé (jusqu'à 300) et de faible dispersité (inférieur à 1,19) ont été obtenus seulement en quelques heures dans l'eau. Ces PIL ont par ailleurs été utilisés comme macroagents de transfert pour générer différents copolymères à blocs en milieu homogène et en émulsion dans le but d’accéder à des nano objets autoassemblés. En effet, différentes morphologies ont été obtenues en s’appuyant sur lesconcepts de la PISA. De plus, des copolymères greffés de type guar-g-PIL ont finalement été construits en milieu liquide ionique.en utilisant des dérivés de guar macroagents de transfert Les PIL combinent à la fois les propriétés des IL (non-volatile, stabilité thermique et chimique, haute conductivité...) et celles des polymères en termes de renforcement mécanique, c’est pourquoi ils ont été exploités pour élaborer des matériaux biohybrides de haute performance. La stratégie envisagée dans ce travail réside sur l’exploitation de trois composants: (i) les chaînes de poly (AEMIBr), (ii) le guar et (iii) un liquide ionique: le chlorure de butylméthylimidazolium (BMIMCl). La voie expérimentale permettant l’obtention de tels matériaux est très simple et non dégradante puisqu’elle n’implique que des étapes de solubilisation de polymères en milieu IL. Les propriétés rhéologiques et thermiques de ces matériaux ont été évaluées. En outre, la morphologie interne, par des mesures de WAXS et SAXS, ainsi que le transport ionique ont été étudiés. Il en ressort que de multiples interactions synergiques sont formées entre le guar et les chaînes de PIL, en parallèle des interactions de type PIL/IL et guar/IL. Des ionogels possédant un haut module élastique (jusqu'à 30 000 Pa) et une stabilité thermique élevée (jusqu'à 310 °C) ont ainsi été obtenus. En particulier, la présence de PIL a permis d’améliorer de façon considérable la stabilité dimensionnelle des gels, en limitant complétement les phénomènes d’exudation rencontrés dans les systèmes binaires guar/IL. Il s’avère, de plus, que ces matériaux sont parfaitement homogènes à l’échelle d’observation des analyses SAXS et WAXS. Ces gels ioniques présentent d'excellentes propriétés de transport ionique (10-4 S/cm à 30 °C) grâce notamment à leur structuration interne continue. Cette famille des matériaux multicomposants à base de guar, présente un fort potentiel, notamment pour une utilisation en tant que gel électrolyte dans le domaine de l’énergie. / This Ph.D work focuses on the preparation of biohybrid materials based on poly(ionic liquid)s (PIL) and a polysaccharide, guar gum. Poly(1-[2-acryloylethyl]-3-methylimidazolium bromide (poly(AEMIBr)) chains were synthesized through RAFT polymerization. Homopolymers with DP up to 300 and dispersity below 1.19 were obtained within hours in water. High chain-end fidelity further allowed for PIL chain extension with various monomers and stable PIL-based nanoparticles with various morphologies using the PISA concept were achieved. A series of guar-g-PIL graft copolymers were finally constructed in IL using guar macroRAFT agents. As PILs combine the attributes emanating from IL molecules (non-volatile, thermally stable, conducting…) with the ones of polymers in terms of mechanical reinforcement, the resulting polymers were exploited to elaborate high performance biohybrid materials. The cornerstone of this subsequent work was based on the straightforward formation of three-component blends: (i) poly(AEMIBr), (ii) guar and (ii) ionic liquid: butylmethylimidazolium chloride (BMIMCl). The pathway to obtain such ternary blends is very simple, since it only implies successive polymer solubilisation steps in IL. The rheological and thermal properties of the resulting materials were investigated. Also, the internal morphology by WAXS and SAXS measurements as well as the ionic transport were studied. It appeared that strong synergistic hydrogen bonding are developed between guar and PIL chains in addition to PIL/IL and guar/IL interactions. Ionogels with high elastic modulus (up to 30 000 Pa) and high thermal stability (up to 310°C) were prepared. Importantly, addition of PIL significantly enhanced the dimensional stability of the resulting ionogels and overcame IL exudation encountered in IL/guar binary systems. SAXS and WAXS revealed a homogeneous morphology and the ionogels were proven to exhibit excellent conductive properties (10-4 S/cm at 30°C) thanks to their highly continuous morphology. The resulting sustainable multicomponent materials may find applications as gel electrolyte for biobattery systems or supercapacitors.
176

Etudes structurales et biophysiques de proteines du virion d' ATV, un bicaudavirus infectant des crenarchees du genre acidianus / Structural and biophysical studies of virion proteins from Acidianus two-tailed virus

Rodrigues, Catarina 18 December 2012 (has links)
Les virus sont les entités biologiques les plus abondantes dans les océans (∼1031 particules). Ils colonisent tous les écosystèmes de la planète y compris les environnements extrêmement acides, chauds et salins, environnements où les archées sont les organismes dominants. Les virus infectant les Crenarchées hyperthermophiles présentent des morphologies exceptionnelles et aussi une très faible proportion de gènes possédant des homologues avec de fonction connue. Parmi ces virus, le virus ATV (Acidianus two-Tailed virus), infecte les archées hyperthermophiles du genre Acidianus. ATV a la propriété unique de présenter un important développement structural complètement indépendante de son hôte, à l'extérieur de celui-Ci. Les virions d'ATV développent de longues queues à chaque extrêmité de sa capside, mais seulement à des températures proches de celles de l'habitat de son hôte, 85°C. Le sujet de ma thèse a porté sur l'étude structurale de protéines du virion d'ATV. J'ai résolu la structure cristalline de la protéine ATV-273, qui possède un nouveau fold α/β. J'ai aussi déterminé la forme de l'enveloppe de cette protéine par SAXS. J'ai montré qu'il est possible de placer deux dimères d'ATV-273, observés dans la structure cristalline, dans cette enveloppe. Ce résultat est aussi en accord avec l'état d'oligomérisation en solution déterminé par chromatographie d'exclusion stérique couplée à la diffusion de la lumière. La fonction de cette protéine reste cependant inconnue. / Viruses are the most abundant biological entity in the oceans (∼1031 particles) and remarkably, viruses populate every ecosystem on the planet including the extreme acidic, thermal, and saline environments where archaeal organisms dominate. The viruses infecting hyperthermophilic Crenarchaea revealed exceptional morphologies and also a very low proportion of genes with recognizable functions and homologues. Among these viruses we find ATV (Acidianus two-Tailed virus). ATV is a virus infecting hyperthermophilic archaea of the genus Acidianus, which has the unique property of undergoing a major morphological development outside and independently of the host cell. Virions develop long tails at each pointed end of the initial lemon-Shaped particle, at temperatures close to those of the host natural habitat, 85 °C. The subject of my thesis has focused on the virion proteins of ATV. I have solved the crystal structure of ATV-273 that revealed a new α/β fold. I have also obtained a SAXS envelope where it is possible to fit two crystal dimers, in agreement with the oligomerization state in solution as determined by size-Exclusion chromatography coupled to multi angle light scattering. The function of this protein, however, could be not determined. Moreover, a negative staining electron microscopy model was obtained for the AAA+ ATPase ATV-618, which belongs to the MoxR familiy and presents sequence high similarity with the AAA-ATase RavA from Escherichia coli K12. I have shown that this thermostable AAA-ATPase enzyme assumes a hexameric ring organisation in the presence of ATP.
177

Implantação iônica de baixa energia em polímero para desenvolvimento de camadas compósitas nanoestruturadas condutoras litografáveis. / Low energy ion implantation into polymers to develop conductive composite layers for lithography.

Teixeira, Fernanda de Sá 28 June 2010 (has links)
Eletrônica utilizando polímero em substituição ao silício é uma área de pesquisa recente com perspectivas econômicas promissoras. Compósitos de polímeros com partículas metálicas apresentam interessantes propriedades elétricas, magnéticas e ópticas e têm sido produzidos por uma grande variedade de técnicas. Implantação iônica de metais utilizando plasma é um dos métodos utilizados para obtenção desses compósitos condutores. Neste trabalho é realizada implantação de íons de ouro de baixa energia em PMMA utilizando plasma. O PMMA tem grande importância tecnológica sendo largamente utilizado como resiste em litografias por feixe de elétrons, raios-X, íons e deep-UV. Como resultado da implantação iônica de baixa energia em PMMA há formação de uma camada nanométrica de material condutor. Esse novo material, denominado compósito isolante-condutor, permite criar micro e nanodispositivos através de técnicas largamente utilizadas em microeletrônica. Medidas elétricas são realizadas in situ em função da dose de íons metálicos implantada, o que permite um estudo das propriedades de transporte desses novos materiais, que podem ser modeladas pela teoria da percolação. Simulações utilizando o programa TRIDYN permitem obter a profundidade e o perfil da implantação dos íons. São mostradas caracterizações importantes tais como Microscopia Eletrônica de Transmissão, Microscopia de Varredura por Tunelamento, Espalhamento de Raios-X a Baixos Ângulos, Difração de Raios-X e Espectroscopia UV-vis. Essas técnicas permitem visualizar e investigar o caráter nanoestruturado do compósito metal-polímero. Ainda como parte deste projeto, as camadas condutoras formadas no polímero são caracterizadas quanto à manutenção das suas características de elétron resiste. / Electronics using polymers instead of silicon is a recent research area with promising economic perspectives. Polymer with metallic particles composites presents interesting electrical, magnetic and optical properties and they have been produced by a broad variety of techniques. Metal ion implantation using plasma is one of the used methods to obtain conductor composites. In this work it is performed low energy gold ion implantation in PMMA by using plasma. PMMA has great technological importance once it is broadly used as resist in electron-beam, X-ray, ion and deep UV lithography. As a result of low energy ion implantation in PMMA, a nanometric conducting layer is formed. This new material, named insulator-conductor composite, can allow the creation of micro and nanodevices through well known microelectronics techniques. Electrical measurements are performed in situ as a function of metal ions implanted dose, which allows the investigation of electrical transport of these new materials, which can be modeled by the percolation theory. Simulations using TRIDYN computer code provide the prediction of depth profile of implanted ions. Important characterizations are showed such as Transmission Electron Microscopy, Scanning Tunneling Microscopy, Small Angle X-Ray Scattering, X-Ray Diffraction and UV-vis Spectroscopy. These techniques allow to visualize and to investigate the nanostructured character of the metal-polymer composite. Still as a part of this project, the conducting layers formed are characterized in relation to the maintenance of their characteristics as electron-beam resist.
178

Redes viscoelásticas de proteínas: Estudos dinâmicos e estruturais do sistema lisozima/tetrametiluréia/água / Viscoelastic networks of proteins: Dynamic and structural studies of the lysozyme/tetramethylurea/water system

Silva, Marcelo Alves da 30 November 2001 (has links)
Lisozima mostrou-se capaz, quando dispersa em certos meios orgânico-aquosos, de gerar sistemas pseudoplásticos que evoluem espontaneamente para redes de caráter viscoelástico. Esse fenômeno foi investigado neste estudo, para lisozima dispersa em uma série de misturas binárias contendo derivados de uréia como componente orgânico. Devido aos notáveis efeitos observados para um de tais derivados, a saber, tetrametiluréia (TMU), especial atenção foi dedicada aos sistemas contendo esse composto. O enfoque experimental incluiu espectroscopia Raman, microcalorimetria, reologia e espalhamento de raios X a baixo ângulo (SAXS). O trabalho envolveu o estudo dos sistemas orgânico-aquosos isolados e na presença de proteína. No primeiro caso, foi feita uma investigação espectroscópica e microcalorimétrica dos sistemas quanto a aspectos relativos à segregação de microdomínios na fase liquida e sua conseqüente relação com a deflagração da transição viscoelástica na proteína. Foram observadas descontinuidades nos valores de entalpias de excesso de mistura para o sistema TMU/água em torno de wTMU = 0,6, assim como padrões peculiares de comportamento espectral em torno dessa concentração da mistura binária. No segundo caso, os sistemas complexos de proteínas gerados foram investigados sob o ponto de vista morfológico e dinâmico, através das técnicas reológicas e de SAXS. Energias de ativação de fluxo determinadas na região sub-crítica, de comportamento Newtoniano, mostraram uma dependência exponencial direta com wTMU, indicando que mudanças estruturais nos fluidos complexos já ocorrem em regiões de composição do solvente bem abaixo da região de transição em wTMU = 0,6. Na região viscoelástica, 0,6<wTMU<0,9, ensaios de relaxação indicaram a presença de duas populações distintas. A tangente de perda (tg &#948; = G\"/G\') apresentou valores menores que a unidade para todos os casos, indicando o caráter \"solid-like\" das redes nas condições de ensaio. Apesar de seu caráter sólido, as redes mostram-se bastante flexíveis, suportando grandes deformações antes da ruptura, como inferido a partir da larga região viscoelástica linear. A variação nos módulos elástico (G\') e de perda (G\") com a composição do solvente indica a dependência do caráter viscoelástico com a fração de massa de TMU na mistura binária. Na região de baixo conteúdo de água (wTMU = 0,9), um aumento em G\" após a região viscoelástica linear é observado, indicando aumento da estruturação antes da ruptura da rede. As curvas de SAXS foram modeladas em seus fatores de forma e de interferência com uma equação unificada para objetos aleatoriamente distribuídos em um continuum. Os resultados permitiram a construção de um modelo, compatível com as demais evidências experimentais, segundo o qual as moléculas de lisozima encontram-se em duas conformações distintas nas matrizes: uma de conformação estendida e caráter fractal, predominante em wTMU > 0,6, com dimensão máxima de ca. de 160 &#197;, responsável pela interdigitação com espécies fractais vizinhas e uma espécie compacta, minoritária em wTMU > 0,6 (porém predominante em wTMU <0,6), com raio de giro de ca. 48 &#197;, presente nos microdomínios intersticiais aquosos da matriz. Verificou-se ainda a viabilidade de incorporação homogênea de uma metaloproteína, o citocromo-c, às matrizes de lisozima, sem perturbação significativa de sua morfologia, o que constitue um evento de potencial interesse biotecnológico. Os resultados deste trabalho trazem novos suportes experimentais à hipótese de correlação entre inversão na microconfiguração do meio solvente binário e deflagração do processo de transição sol-gel da proteína. / Lysozyme was found to be able, when dispersed in certain organic/aqueous media, to generate pseudoplastic systems that spontaneously evolve to three-dimensional networks with viscoelastic character. This phenomenon was investigated in this study, for lysozyme dispersed in a series of binary mixtures containing urea derivatives as the organic component. Due to the remarkable effects obtained in one of such derivatives, namely, tetramethylurea (TMU), special attention was given to systems containing that compound. The experimental approach included Raman spectroscopy, microcalorimetry, rheology and small angle X ray scattering (SAXS). The work involved the study of the organic/aqueous systems on their own and in the presence of protein. The former consisted of binary liquid mixtures that were spectroscopically and microcalorimetrically investigated as to aspects concerning microdomain segregation in the liquid phase and its consequent relationship with the threshold of the protein viscoelastic transition. Discontinuities in the excess enthalpy of mixture were observed for TMU/water system around wTMU=0.6, as well as peculiar spectral patterns around that same binary mixture concentration. The latter comprised complex protein systems that were investigated both under a morphological and dynamical point of view. Flow activation energies determined in the sub-critical (Newtonian) region showed an exponential increase with wTMU, indicating that structural changes in the comp]ex fluids are under way at solvent concentration regions well below that of the transition, at wTMU = 0.6. In the viscoelastic region, 0.6<wTMU<0.9, relaxation studies indicated the presence of two distinct populations. The loss tangent (tan &#948; = G\"/G\') presented values lower than the unity for all cases, indicating the solid-like character of the matrices, in the assay conditions. Despite their solid character the networks are quite flexible, standing large strains before rupture, as inferred from the large linear viscoelastic region. The variation in elastic (G\') and loss (G\") moduli with solvent composition indicates a dependence of the viscoelastic character on TMU mass fraction in the binary mixture. In the region of low water content (wTMU = 0.9), an increase in G\" after the LVR is observed, indicating increase in network structuring before rupture. SAXS curves were modeled with a unified equation for randomly distributed objects in a continuum. Results allowed the proposal of a model, which is compatible with the experimental evidence obtained through the other techniques in this work, according to which lysozyme molecules occur in two distinct conformations: one expanded and with fractal character, prevailing at wTMU > 0.6, with maximum dimension ca. 160 &#197; and interdigitated with neighbouring fractal species; and a compact conformation, of minor prevalence at wTMU>0.6 (but prevailing at wTMU < 0.6), with radius of gyration ca. 48 &#197;, present in the matrix microdomain interstices. It has also been verified the feasibility of homogeneous incorporation of cytochrome-c into the lysozyme matrices, an event of potential biotechnological interest. Results from this work bring further experimental support to our hypothesis on the correlation between microconfigurational inversion in the binary solvent medium and the sol-gel transition in the protein.
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Aqueous solutions of complexes formed by model polyelectrolytes of opposite charges / Solutions aqueuses de complexes formés par des polyélectrolytes modèles de charge opposée

Konko, Iuliia 09 December 2015 (has links)
Cette thèse présente une étude des solutions aqueuses de trois complexes de polyélectrolytes (PECs) modèles. Les PECs résultent de la complexation de deux polyélectrolytes linéaires de charge opposée: un polycation (le PDADMA) et trois polyanions de longueur de persistance non électrostatique distinctes: le polystyrene sulfoné (PSS), le poly(α-méthyl styrène sulfoné) (PαMSS) et l’acide hyaluronique (HA). En plus de l’influence de la rigidité intrinsèque des polyanions sur la formation et la structure des PECs, les effets de la force ionique et de la méthode de préparation des solutions aqueuses de PECs ainsi que l’influence de la concentration des solutions binaires de polyélectrolytes initiales ont également été abordés. Nous suggérons que le processus de complexation entre polycations et polyanions en régimes semidilué et concentré est analogue à une gélification. Il y a toutefois une différence entre les deux complexes qui est reliée à la différence de rigidité intrinsèque. / This PhD thesis presents a study of the aqueous solutions of three model polyelectrolyte complexes (PECs). PECs were formed between hydrophilic and highly charged linear macrocations of poly(diallyldimethyl ammonium) (PDADMA) and linear macroanions of distinct intrinsic persistence lengths: sulfonated polystyrene (PSS), sulfonated poly(α-methyl styrene) (PαMSS) and hyaluronate (HA). In addition to the effect of the macroion stiffness on the PEC formation and structure, those of the ionic strength and the way of preparing the PEC aqueous solutions as well as that of the concentration regimes of the initial PE aqueous solutions were also tackled. We suggest the complexation between macrocations and macroanions in the semidilute and concentrated regimes can be described as a universal gelation process. A difference between PDADMA-PSS and PDADMA-HA complexes is related to the primary self-assembling process and is associated with the distinct structural models for PECs.
180

Estrutura e ambiente local de dimetil sulfóxido (DMSO) em diferentes meios iônicos / Structure and local environment of dimethyl sulfoxide (DMSO) in different ionic media

Avila, Jocasta Neves Libório de 29 October 2018 (has links)
Apesar de ser utilizado há muito tempo como solvente para espécies orgânicas e inorgânicas, bem como carreador de fármacos, muitos aspectos relativos à auto-associação intermolecular do dimetil sulfóxido (DMSO) e às suas interações com espécies iônicas são ainda motivos de controvérsia na literatura. No presente estudo, a estrutura e ambiente local de dimetil sulfóxido (DMSO) em diferentes meios iônicos foram estudados por meio de três abordagens diferentes. Na primeira abordagem, o efeito de não-coincidência Raman (NCR) observado na banda atribuída ao modo &#957;(S=O) do DMSO, ca. 1050 cm-1, foi investigado para o líquido puro e em soluções de tetracloreto de carbono (CCl4) e água. Além disso, foi investigado o efeito de espécies iônicas (Kl, KSCN, KBr, TBAN3, TBAOCN, LiClO4, Mg(ClO4)2) na frequência &#957;(S=O), bem como no NCR das soluções. Os resultados de NCR juntamente com as técnicas de infravermelho, RMN e de medidas de propriedades físico-químicas mostraram que essas espécies iônicas não somente afetam a estrutura de associação do DMSO, como são capazes de interagir fortemente com o solvente. Na segunda abordagem, com a finalidade de modular as propriedades de um líquido iônico, fez-se a análise estrutural das misturas envolvendo DMSO e água como solventes e o líquido iônico EAN como soluto por meio das técnicas de espalhamento de raios-X e de nêutrons. Os resultados mostraram que a estrutura cátion-ânion do EAN é afetada pela presença de DMSO e, que em ambos os solventes são evidentes fortes ligações de hidrogênio entre o cátion EA+ e os oxigênios do solvente e do ânion nitrato. As moléculas de água não afetam drasticamente a estrutura do EAN, pois seu caráter doador/aceptor de LH e seu tamanho permite a formação de pontes entre cátion e o ânion, no entanto, EAN consegue distorcer a rede tridimensional de ligação de hidrogênio da água. Por outro lado, as moléculas de DMSO afastam os ânions da região polar do EA+ na competição pela formação de LH com o cátion e o EAN, por sua vez, provoca a ruptura das estruturas de associação do DMSO. Na terceira abordagem, misturas envolvendo três diferentes SEPs (uma classe de líquidos iônicos); Relina, MUCHCl e DMUCHCl; com DMSO foram investigadas por meio de suas propriedades físico-químicas e por espectroscopia Raman, tendo em vista modular as propriedades dos SEPs. Neste caso, os resultados não apontaram para interações fortes e específicas envolvendo as espécies iônicas e o DMSO, mas a um maior empacotamento do sistema, onde os desvios de suas propriedades físico-químicas com relação à idealidade são negativos e sua mobilidade iônica juntamente com a análise dos espectros vibracionais não evidenciaram interações específicas. No entanto, as viscosidades e densidades diminuíram nas misturas e a mobilidade iônica foi favorecida. / Although it has long been used as a solvent for organic and inorganic species, as well as drug carriers, many aspects concerning the intermolecular self-association of dimethyl sulfoxide (DMSO) and their interactions with ionic species are still controversial in the literature. In the present study, the structure and local environment of dimethyl sulfoxide (DMSO) in different ionic media were studied using three different approaches. In the first approach, the Raman non-coincidence effect (NCE) observed in the band assigned to the DMSO &#957;(S = O) mode, ca. 1050 cm-1, was investigated for the pure liquid and in its solutions of carbon tetrachloride (CCl4) and water. In addition, the effect of ionic species (K1, KSCN, KBr, TBAN3, TBAOCN, LiClO4, Mg (ClO4)2) on the frequency &#957;(S = O) as well as the NCE of the solutions were investigated. The results of NCR together with the infrared, NMR and physico-chemical properties measurements showed that these ionic species not only affect the association structure of DMSO, but are also capable of interacting strongly with the solvent. In the second approach, with the purpose of modulating the properties of an ionic liquid, the structural analysis of the mixtures involving DMSO and water as solvents and the ionic liquid EAN as a solute were carried out by X-ray and neutron scattering techniques. The results showed that the cation-anion structure of the EAN is affected by the presence of DMSO and that in both solvents strong hydrogen bonds between the EA+ cation and the oxygen from solvent and from nitrate anion are evident. The water molecules do not affect the structure of the EAN drastically, because its LH donor/acceptor character and its size allows the formation of bridges between cation and anion, however, EAN can distort the hydrogen bonding three-dimensional network in water. On the other hand, the DMSO molecules repels the anions from the polar head of EA+ in the competition in forming LH with the cation, however EAN break down DMSO association structures. In the third approach, mixtures involving three different SEPs (a class of ionic liquids); Relina, MUCHCl and DMUCHCl; with DMSO were investigated by means of their physicochemical properties and by Raman spectroscopy, in order to modulate the properties of SEPs. In this case, the results did not point to strong and specific interactions involving the ionic species and DMSO, but to a greater packaging of the system, where the deviations of its physicochemical properties with respect to the ideality are negative and its ionic mobility together with the analysis of the vibrational spectra showed no specific interactions. However, the viscosities and densities decreased in the mixtures and the ionic mobility was favored.

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