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  • About
  • The Global ETD Search service is a free service for researchers to find electronic theses and dissertations. This service is provided by the Networked Digital Library of Theses and Dissertations.
    Our metadata is collected from universities around the world. If you manage a university/consortium/country archive and want to be added, details can be found on the NDLTD website.
621

Nekanonické lidské translační iniciační faktory z rodiny 4E v RNA granulích i mimo ně / Noncanonical human eIF4Es in and out of the RNA granules

Frydrýšková, Klára January 2020 (has links)
Eukaryotic translation initiation factor eIF4E1 (eIF4E1) plays a pivotal role in the control of cap-dependent translation initiation, occurs in P- bodies and is important for the formation of stress granules (SG). Human cells encompass two other non-canonical translation initiation factors capable of cap binding although with a lower affinity for the cap: eIF4E2 and eIF4E3. Here, I investigated the ability of individual eIF4E family members and their variants to localize to SGs and P-bodies in stress-free, arsenite and heat shock conditions. Under all tested conditions, both eIF4E1 and eIF4E2 proteins and all their variants localized to P-bodies unlike eIF4E3 protein variants. Under both arsenite and heat stress conditions all tested variants of eIF4E1 and the variant eIF4E3-A localized to SGs albeit with different abilities. Protein eIF4E2 and all its investigated variants localized specifically to a major part of heat stress-induced stress granules. Further analysis showed that approximately 75% of heat stress-induced stress granules contain all three eIF4Es, while in 25% of them eIF4E2 is missing. Large ribosomal subunit protein L22 was found specifically enriched in arsenite induced SGs. Heat stress-induced re- localization of several proteins typical for P-bodies such as eIF4E2, DCP-1, AGO-2...
622

Non-canonical small heat shock protein activity in health and disease of C. elegans

Iburg, Manuel 22 February 2021 (has links)
Die erfolgreiche Synthese und Faltung von Proteinen ist eine Voraussetzung der Zellfunktion und ein Versagen der Proteinhomöostase führt zu Krankheit oder Tod. In der Zelle sichern molekulare Chaperone die korrekte Faltung der Proteine oder tragen zur Entsorgung unwiederbringlich fehlgefalteter Proteinsubstrate bei. Unter diesen Chaperonen sind kleine Hitzeschockproteine (sHsp) ein ATP-unabhängiger Teil des Proteostasenetzwerks. In dieser Arbeit habe ich das bisher wenig erforschte sHsp HSP-17 aus C. elegans untersucht. Im Gegensatz zu anderen sHsps zeigte HSP-17 nur eine geringe Aktivität beim Verhindern der Aggregation von Proteinsubstraten. Stattdessen konnte ich in vitro zeigen, dass HSP-17 die Aggregation von Modellsubstraten fördert, was hier für Metazoen-sHsps erstmals gezeigt wurde. HSP-17 kopräzipitiert mit Substraten und modifiziert deren Aggregate möglicherweise. HSP-17 kolokalisiert in vivo mit Aggregaten, und seine aggregationsfördernde Aktivität konnte ich für das physiologische Substrat KIN-19 und heterolog exprimierte polyQ-Peptide validieren. Durch ex vivo Analysen konnte ich zeigen, dass die Aktivität von HSP-17 für die Fitness relevant ist  In einem zweiten Projekt habe ich zur Entwicklung eines neuen Modelles für Aß-Pathologie in C. elegans beigetragen, welches substöchiometrische Markierungen verwendet, um eine zeitnahe Visualisierung der Aß-Aggregation in spezifischen Zelltypen zu ermöglichen. Das Modell spiegelt bekannte Phänotypen der Aß-Proteotoxizität aus Menschen und bestehenden C. elegans Aß-Stämmen wider. Interessanterweise zeigt eine Untergruppe der Neuronen, die IL2-Neuronen, eine höhere Anfälligkeit für die Aggregation und Proteotoxizität von Aß1-42. Eine gezielte Reduktion von Aß1-42 in IL2 Neuronen führt zu einer systemischen Reduktion der Pathologie. Somit bietet das Modell eine neue Plattform, um die Bedeutung molekularer Chaperone, wie z. B. der sHsps, für Amyloidosen zu untersuchen, auch im Hinblick auf menschliche Erkrankungen. / Successful synthesis and folding of proteins is a prerequisite for cellular function and failure of protein homeostasis leads to disease or death. Within the cell, molecular chaperones ensure correct protein folding or aid in the disposal of terminally misfolded protein substrates. Among these chaperones, small heat shock proteins (sHsps) are ATP-independent members of the proteostasis network. In this work, I analyzed the so far under-researched C. elegans sHsp HSP-17. Unlike other sHsps, HSP-17 exhibited only weak activity in preventing aggregation of protein substrates. Instead, I could show in vitro that HSP-17 can promote the aggregation of protein substrates, which is the first demonstration for metazoan sHsps. HSP-17 co-precipitates with substrates and potentially modifies the aggregates.  HSP-17 colocalizes with aggregates and pro-aggregation activity is present in vivo, which I demonstrated for the physiological substrate KIN-19 and heterologously expressed amyloidogenic polyQ peptides. By physiological, biochemical and proteomic analysis I showed that HSP-17 activity is relevant for organismal fitness In a second project, I contributed to the development and characterization of a novel model of Aß pathology in C. elegans. This new AD model employs sub-stoichiometric labeling to allow live visualization of Aß aggregation in distinct cell types. The model mirrors known phenotypes of Aß proteotoxicity in humans and existing C. elegans Aß strains. Interestingly, a subset of neurons, the IL2 neurons, is shown to be more vulnerable to Aß proteotoxicity and targeted depletion of Aß in these neurons systemically ameliorates pathology. Thereby, the model presents a new platform to assess the relevance of molecular chaperones such as sHsps in amyloidosis with a perspective on human disease.
623

Down-regulation of Heat Shock Protein HSP90ab1 in Radiation-damaged Lung Cells other than Mast Cells

Haase, Michael G., Geyer, Peter, Fitze, Guido, Baretton, Gustavo B. 30 September 2019 (has links)
Ionizing radiation (IR) leads to fibrosing alveolitis (FA) after a lag period of several weeks to months. In a rat model, FA starts at 8 weeks after IR. Before that, at 5.5 weeks after IR, the transcription factors Sp1 (stimulating protein 1) and AP-1 (activator protein 1) are inactivated. To find genes/proteins that were down-regulated at that time, differentially expressed genes were identified in a subtractive cDNA library and verified by quantitative RT-PCR (reverse transcriptase polymerase chain reaction), western blotting and immunohistochemistry (IH). The mRNA of the molecular chaperone HSP90AB1 (heat shock protein 90 kDa alpha, class B member 1) was down-regulated 5.5 weeks after IR. Later, when FA manifested, HSP90ab1 protein was down-regulated by more than 90% in lung cells with the exception of mast cells. In most mast cells of the normal lung, both HSP90ab1 and HSP70, another major HSP, show a very low level of expression. HSP70 was massively up-regulated in all mast cells three months after irradiation whereas HSP90AB1 was up-regulated only in a portion of mast cells. The strong changes in the expression of central molecular chaperones may contribute to the well-known disturbance of cellular functions in radiation-damaged lung tissue. (J Histochem Cytochem 62:355–368, 2014)
624

Magnetic Nanoparticle Hyperthermia-Mediated Clearance of Beta-amyloid Plaques: Implications in the Treatment of Alzheimer’s Disease

Dyne, Eric D. 20 April 2021 (has links)
No description available.
625

Hsp90-Mediated Maturation of Kinases and Nuclear Steroid Hormone Receptors: A Dissertation

Pursell, Natalie W. 28 April 2011 (has links)
Among heat shock proteins, Hsp90 is unusual because it is not required for the proper folding of most cellular proteins but rather is disproportionally linked to the activation of signal transduction proteins including over forty kinases and many steroid hormone receptors. Mutated forms of many Hsp90 clients are causative agents in cancer, making Hsp90 a promising pharmacological target. Many small molecular inhibitors have been identified that competitively bind to the ATP binding site of Hsp90, some of which are in clinical trials as anticancer agents. Although the activation of kinase and hormone receptor clients by Hsp90 and its co-chaperones has been extensively studied, the molecular mechanism of client protein activation is poorly understood. Hsp90 is a dimeric chaperone containing three domains: the N-terminal (N) and middle (M) domains contribute directly to ATP binding and hydrolysis and the C-terminal (C) domain mediates dimerization. At physiological concentration, Hsp90 predominantly forms dimers, but the possibility that full-length monomers might also function in cells has not been tested. In Chapter 3, we used a single-chain strategy to design a full-length Hsp90 monomer (NMCC). The resulting construct was predominantly monomeric at physiological concentration and did not function to support yeast viability as the sole Hsp90. NMCC Hsp90 was also defective at ATP hydrolysis and the activation of kinase and steroid hormone receptor clients in yeast cells. The ability to support yeast growth was rescued by the addition of a coiled-coil dimerization domain, indicating that the parental single-chain construct is functionally defective because it is monomeric. After finding that a full-length Hsp90 monomer containing only one ATPase site was unable to support yeast viability or activate Hsp90 clients, we set out to further explore the role of ATPase activity in client protein activation. Approximately 10 % of the yeast proteome binds to Hsp90 making it important to study Hsp90 function in the cellular environment where all binding partners are present. In Chapter 4, we observed that co-expression of different Hsp90 subunits in Saccharomyces cerevisiae caused unpredictable synthetic growth defects due to cross-dimerization. We engineered super-stabilized Hsp90 dimers that resisted cross-dimerization with endogenous Hsp90 and alleviated the synthetic growth defect. We utilized these super-stabilized dimers to analyze the ability of ATPase mutant homodimers to activate known Hsp90 client proteins in yeast cells. We found that ATP binding and hydrolysis by Hsp90 are both required for the efficient maturation of the glucocorticoid hormone receptor (GR) and v-src confirming the critical role of ATP hydrolysis in the maturation of steroid hormone receptors and kinases in vivo. In addition to its role in the activation of signal transduction client proteins, Hsp90 has been shown to suppress the in vitro aggregation of numerous hard-to-fold proteins. In Chapter 5, we examine the role of charge in Hsp90 anti-aggregation activity. The charge on Hsp90 is largely concentrated in two highly acidic regions. We found that deletion of both charge-rich regions dramatically impaired Hsp90 anti-aggregation activity. Addition of an acid-rich region with a distinct amino acid sequence to our double-deleted Hsp90 construct rescued the anti-aggregation activity of Hsp90 indicating that the net charge contributes to its anti-aggregation activity. The in vitro anti-aggregation activity of Hsp90 studied in Chapter 5 occurs in the absence of ATP. However, all of the biologically important functions of Hsp90 in cells identified to date, including the maturation of kinases and nuclear steroid hormone receptors, clearly require ATP hydrolysis. Why does Hsp90 robustly hinder the aggregation of hard-to-fold proteins without ATP in vitro, but in vivo uses ATP hydrolysis for all of its essential functions? By utilizing separation of function Hsp90 variants (that specifically lack in vitro anti-aggregation activity) we have begun to address this question. We find that anti-aggregation deficient Hsp90 is unable to support yeast growth under stressful conditions, potentially due to reduced cellular expression. Interestingly, the ATP-independent anti-aggregation activity of Hsp90 has no measureable impact on cellular function. Thus, hindering the aggregation of most hard-to- fold proteins by Hsp90 (independent of ATP hydrolysis) does not appear to be important for cell function. These results suggest a cellular model where the Hsp40/60/70 machinery is responsible for hindering the aggregation of most hard-to-fold proteins while Hsp90 assists in the maturation of a select set of clients in an ATP-dependent fashion, potentially aided by its inherent anti-aggregation properties.
626

A New Laser Pointer Driven Optical Microheater for Precise Local Heat Shock

Placinta, Mike 01 January 2009 (has links) (PDF)
The zebrafish has emerged as an important genetic model system for the study of vertebrate development. However, while genetics is a powerful tool for the study of early gene functions, the approach is more limited when it comes to understanding later functions of genes that have essential roles in early embryogenesis. There is thus a need to manipulate gene expression at different times, and ideally only in some regions of the developing embryo. Methods for conditional gene regulation have been established in Drosophila, C.elegans and the mouse, utilizing conditional gene activation systems such as the Gal4-UAS system (fly) and the cre/lox recombination system (mouse). While these tools are also being developed in zebrafish, the accessibility of the zebrafish embryo makes other approaches both possible and desirable. We have taken advantage of a heat-shock inducible system that uses the hsp70 promoter that is activated by cellular stress, such as heat. Having established that this global heat shock method allows temporal control of gene expression, we aimed to spatially control gene expression by applying controlled thermal heat to only a small region of the embryo. This would allow us to determine cell- and tissue-autonomous roles for developmentally important genes in an embryo with otherwise normal gene function. We have now developed a device that uses a laser to heat a defined region of the embryo, and thus activate the hsp70 promoter only in restricted regions of the embryo. The output of a 75 mW red laser pointer was focused into the 50 µm diameter core of an optical fiber, whose cleaved and coated end was used to heat, and thus induce, gene expression in a defined area. We have established conditions that allow controlled heating and trans-gene activation in small regions of the embryo without inducing cell death. This new tool will allow us to study the cell-autonomous roles of embryonic signaling molecules in cell differentiation, proliferation, and survival in a variety of tissues and at different times.
627

Análisis de la variabilidad genética del género Capsicum frente a estreses abióticos para su uso como portainjertos. Estudio de los mecanismos fisiológicos de tolerancia, del comportamiento agronómico y de la calidad del fruto

Gisbert Mullor, Ramón 01 September 2023 (has links)
Tesis por compendio / [ES] En la actualidad, los estreses abióticos son una de las principales limitaciones en la producción agraria y seguridad alimentaria. La búsqueda de estrategias para conseguir una mejor tolerancia a los estreses abióticos es un objetivo de gran interés a nivel mundial, especialmente frente al estrés supra-térmico teniendo en cuenta el escenario de calentamiento global en el cual nos encontramos. Un modo de sortear los estreses ambientales, bajo el prisma de un manejo integrado o ecológico del cultivo, es la utilización de plantas injertadas como estrategia de adaptación. En pimiento, cultivo de gran importancia económica en nuestro país, la menor utilización de la técnica del injerto es debida a la inexistencia de patrones con suficiente adaptabilidad a condiciones de estrés abiótico. En este sentido, el equipo de investigación mixto entre la Universitat Politècnica de València (UPV) y el Instituto Valenciano de Investigaciones Agrarias (IVIA), el cual engloba esta tesis doctoral, ha sido capaz de seleccionar diferentes accesiones e híbridos de pimiento, entre ellos el híbrido NIBER®, que utilizados como portainjertos han obtenido buenos resultados en término de rendimiento en condiciones de estrés hídrico y salino, y generar información respecto a los diferentes mecanismos fisiológicos y moleculares responsables de dicha tolerancia. Sin embargo, hasta la fecha, la información sigue siendo limitada en diferentes sentidos: no se ha estudiado en profundidad el efecto del injerto a las altas temperaturas; no se ha profundizado en el estudio de los mecanismos de tolerancia del portainjerto NIBER® frente al estrés hídrico causado por un riego deficitario controlado; y por último, ningún estudio se ha centrado en analizar los efectos del propio injerto sobre el rendimiento y calidad de los frutos de variedades tradicionales de pimiento. En este sentido, los objetivos que se han planteado en esta tesis doctoral han sido: I) evaluación fisiológica y agronómica de la tolerancia al estrés supra-térmico de accesiones de Capsicum annuum L. utilizadas como portainjertos; II) estudio de los mecanismos fisiológicos que subyacen en el comportamiento de portainjertos tolerantes a estrés supra-térmico; III) estudio de las bases del comportamiento agronómico y fisiológico de portainjertos de pimiento tolerantes a estrés hídrico en condiciones controladas de riego deficitario; IV) evaluación agronómica y de la calidad del fruto de variedades tradicionales de pimiento injertadas sobre patrones tolerantes a estreses abióticos. En esta tesis doctoral, por un lado, hemos sido capaces de seleccionar accesiones de pimiento, especialmente A57, que utilizadas como portainjertos confieren a la variedad injertada cierto grado de tolerancia al estrés térmico por altas temperaturas. También hemos podido comprobar que estos portainjertos tolerantes permiten a la variedad generar respuestas adaptativas a los efectos negativos de este estrés mediante la modificación de su comportamiento fisiológico, disminuyendo la fuga de electrolitos y la acumulación de H2O2, y aumentando el contenido de clorofilas y carotenoides en las hojas. Esta respuesta fisiológica observada en las hojas resulta en una mejor adaptación fisiológica en su fase reproductiva, mejorando el contenido de prolina en las anteras y la viabilidad de los granos de polen, incrementando con ello el cuajado de frutos y en consecuencia el rendimiento comercial. Por otro lado, hemos visto que la tolerancia al estrés hídrico conferida por el portainjerto NIBER® es consecuencia de una modificación fisiológica que permite mantener los niveles de fotosíntesis con una adecuada eficiencia en el uso del agua, resultando en un mayor rendimiento comercial. En este sentido, el uso de la estrategia de riego deficitario combinada con el uso de portainjertos tolerantes al estrés hídrico y con un mayor desarrollo radical, como es el caso del NIBER®, puede considerarse útil para reducir el consumo de agua, amortiguando lo / [CA] En l'actualitat, els estressos abiòtics són una de les principals limitacions en la producció agrària i seguretat alimentària. La cerca d'estratègies per a aconseguir una millor tolerància als estressos abiòtics és un objectiu de gran interés a nivell mundial, especialment davant de l'estrés supra-tèrmic tenint en compte l'escenari de calfament global en el qual ens trobem. Una manera de sortejar els estressos ambientals, sota el prisma d'un maneig integrat o ecològic del cultiu, és la utilització de plantes empeltades com a estratègia d'adaptació. En pimentó, cultiu de gran importància econòmica al nostre país, la menor utilització de la tècnica de l'empelt és deguda a la inexistència de patrons amb suficient adaptabilitat a condicions d'estrés abiòtic. En aquest sentit, l'equip d'investigació mixt entre la Universitat Politècnica de València (UPV) i l'Institut Valencià d'Investigacions Agràries (IVIA), el qual engloba aquesta tesi doctoral, ha sigut capaç de seleccionar diferents accessions e híbrids de pimentó, entre ells l'híbrid NIBER®, que utilitzats com portaempelts han obtingut bons resultats en terme de rendiment en condicions d'estrés hídric i salí, i generar informació respecte als diferents mecanismes fisiològics i moleculars responsables d'aquesta tolerància. No obstant això, fins hui, la informació continua sent limitada en diferents sentits: no s'ha estudiat en profunditat l'efecte de l'empelt a les altes temperatures; no s'ha aprofundit en l'estudi dels mecanismes de tolerància del portaempelt NIBER® enfront de l'estrés hídric causat per un reg deficitari controlat; i finalment, cap estudi s'ha centrat en estudiar els efectes del propi empelt sobre el rendiment i qualitat dels fruits de varietats tradicionals de pimentó. En aquest sentit, els objectius que s'han plantejat en aquesta tesi doctoral han sigut: I) avaluació fisiològica i agronòmica de la tolerància a l'estrés supra-tèrmic d'accessions de Capsicum annuum L. utilitzades com portaempelts; II) estudi dels mecanismes fisiològics que subjauen en el comportament de portaempelts tolerants a estrés supra-tèrmic; III) estudi de les bases del comportament agronòmic i fisiològic de portaempelts de pimentó tolerants a estrés hídric en condicions controlades de reg deficitari; IV) avaluació agronòmica i de la qualitat del fruit de varietats tradicionals de pimentó empeltades sobre patrons tolerants a estressos abiòtics. En aquesta tesi doctoral, d'una banda, hem sigut capaços de seleccionar accessions de pimentó, especialment A57, que utilitzades com portaempelts confereixen a la varietat empeltada un cert grau de tolerància a l'estrés tèrmic per altes temperatures. També hem pogut comprovar que aquests portaempelts tolerants permeten a la varietat generar respostes adaptatives als efectes negatius d'aquest estrés mitjançant la modificació del seu comportament fisiològic, disminuint la fugida d'electròlits i l'acumulació de H2O2, i augmentant el contingut de clorofil·les i carotenoides en les fulles. Aquesta resposta fisiològica observada en les fulles resulta en una millor adaptació fisiològica en la seua fase reproductiva, millorant el contingut de prolina en les anteres i la viabilitat dels grans de pol·len, incrementant amb això el quallat de fruits i en conseqüència el rendiment comercial. D'altra banda, la tolerància a l'estrés hídric conferida pel portaempelt NIBER® és conseqüència d'una modificació fisiològica que permet mantenir els nivells de fotosíntesi amb una adequada eficiència en l'ús de l'aigua, resultant en un major rendiment comercial. En aquest sentit, l'ús de l'estratègia de reg deficitari combinada amb l'ús de portaempelts tolerants a l'estrés hídric i amb un major desenvolupament radical, com és el cas del NIBER®, pot considerar-se útil per a reduir el consum d'aigua, esmorteint els efectes negatius de l'estrés sobre el rendiment, degut principalment a la menor incidència de BER. Finalment, hem sigut capaços de constatar que l'ús de portaem / [EN] Currently, abiotic stresses are one of the main limitations in agricultural production and food security. The search for strategies to achieve a better tolerance to abiotic stresses is an objective of great interest worldwide, especially in the face of supra-thermal stress, considering the global warming scenario in which we find ourselves. One way to overcome environmental stresses, under the prism of an integrated or ecological management of the crop, is the use of grafted plants as an adaptation strategy. In pepper, a crop of great economic importance in our country, the lesser use of the grafting technique is due to the lack of rootstocks with sufficient adaptability to abiotic stress conditions. In this sense, the mixed research team between Universitat Politècnica de València (UPV) and Instituto Valenciano de Investigaciones Agrarias (IVIA), which includes this doctoral thesis, has been able to select different pepper accessions and hybrids, including the NIBER® hybrid, which used as rootstocks have obtained good results in terms of yield under conditions of water and saline stress, and generate information regarding the different physiological and molecular mechanisms responsible for said tolerance. However, to date, the information remains limited in different ways: the effect of grafting at high temperatures has not been studied in depth; the study of the tolerance mechanisms of the NIBER® rootstock against water stress caused by controlled deficit irrigation has not been studied in depth; and finally, no study has focused on analyzing the effects of the graft itself on the yield and quality of the fruits of traditional pepper varieties. In this sense, the objectives that have been set in this doctoral thesis have been: I) physiological and agronomic evaluation of the tolerance to supra-thermal stress of accessions of Capsicum annuum L. used as rootstocks; II) study of the physiological mechanisms that underlie the behavior of rootstocks tolerant to supra-thermal stress; III) study of the bases of the agronomic and physiological behavior of pepper rootstocks tolerant to water stress under controlled conditions of deficit irrigation; IV) agronomic and fruit quality evaluation of traditional pepper varieties grafted on rootstocks tolerant to abiotic stresses. In this doctoral thesis, on the one hand, we have been able to select pepper accessions, especially A57, which, when used as rootstocks, give the grafted variety a certain degree of tolerance to thermal stress from high temperatures. We have also been able to verify that these tolerant rootstocks allow the variety to generate adaptive responses to the negative effects of this stress by modifying its physiological behavior, decreasing electrolyte leakage and H2O2 accumulation, and increasing the content of chlorophylls and carotenoids in the leaves. This physiological response observed in the leaves results in a better physiological adaptation in its reproductive phase, improving the proline content in the anthers and the viability of pollen grains, thereby increasing fruit set and consequently commercial yield. On the other hand, the tolerance to water stress conferred by the NIBER® rootstock is the consequence of a physiological modification that allows maintaining photosynthesis levels with an adequate water use efficiency, resulting in a higher commercial yield. In this sense, the use of the deficit irrigation strategy combined with the use of tolerant rootstocks to water stress and with greater root development, as is the case of NIBER®, can be considered useful to reduce water consumption, cushioning the negative stress effects on yield, mainly due to the lower incidence of blossom-end rot (BER). Finally, we have been able to verify that the use of tolerant rootstocks to abiotic stresses, such as NIBER®, in traditional pepper varieties could be a useful technique to improve the yield and commercial quality of this crop, mainly by reducing the incidence of BER, / Esta tesis doctoral ha sido realizada gracias a la financiación del Ministerio de Ciencia e Innovación (MCIN/AEI/10.13039/501100011033) mediante los proyectos RTA-2017- 00030-C02 y PID2020-118824RR-C2, y a la financiación del Ministerio de Universidades a través de un contrato predoctoral FPU (FPU18/00564) / Gisbert Mullor, R. (2023). Análisis de la variabilidad genética del género Capsicum frente a estreses abióticos para su uso como portainjertos. Estudio de los mecanismos fisiológicos de tolerancia, del comportamiento agronómico y de la calidad del fruto [Tesis doctoral]. Universitat Politècnica de València. https://doi.org/10.4995/Thesis/10251/196652 / Compendio
628

Functional Effects of ARV-1502 Analogs Against Bacterial Hsp70 and Implications for Antimicrobial Activity

Brakel, Alexandra, Kolano, Lisa, Kraus, Carl N., Otvos Jr, Laszlo, Hoffmann, Ralf 03 April 2023 (has links)
The antimicrobial peptide (AMP) ARV-1502 was designed based on naturally occurring short proline-rich AMPs, including pyrrhocoricin and drosocin. Identification of chaperone DnaK as a therapeutic target in Escherichia coli triggered intense research on the ligand- DnaK-interactions using fluorescence polarization and X-ray crystallography to reveal the binding motif and characterize the influence of the chaperone on protein refolding activity, especially in stress situations. In continuation of this research, 182 analogs of ARV-1502 were designed by substituting residues involved in antimicrobial activity against Gramnegative pathogens. The peptides synthesized on solid-phase were examined for their binding to E. coli and S. aureus DnaK providing 15 analogs with improved binding characteristics for at least one DnaK. These 15 analogs were distinguished from the original sequence by their increased hydrophobicity parameters. Additionally, the influence of the entire DnaK chaperone system, including co-chaperones DnaJ and GrpE on refolding and ATPase activity, was investigated. The increasingly hydrophobic peptides showed a stronger inhibitory effect on the refolding activity of E. coli chaperones, reducing protein refolding by up to 64%. However, these more hydrophobic peptides had only a minor effect on the ATPase activity. The most dramatic changes on the ATPase activity involved peptides with aspartate substitutions. Interestingly, these peptides resulted in a 59% reduction of the ATPase activity in the E. coli chaperone system whereas they stimulated the ATPase activity in the S. aureus system up to 220%. Of particular note is the improvement of the antimicrobial activity against S. aureus from originally >128 μg/mL to as low as 16 μg/mL. Only a single analog exhibited improved activity over the original value of 8 μg/mL against E. coli. Overall, the various moderate-throughput screenings established here allowed identifying (un)favored substitutions on 1) DnaK binding, 2) the ATPase activity of DnaK, 3) the refolding activity of DnaK alone or together with co-chaperones, and 4) the antimicrobial activity against both E. coli and S. aureus.
629

Mechanisms of benzyl alcohol tolerance in Drosophila melanogaster

Alhasan, Yazan Mahmoud 19 August 2010 (has links)
Proper neuronal function requires the preservation of appropriate neural excitability. An adaptive increase in neural excitability after exposure to agents that depress neuronal signaling blunts the sedative drug effects upon subsequent drug exposure. This adaptive response to drug exposure leads to changes in drug induced behaviors such as tolerance, withdrawal and addiction. Here I use Drosophila melanogaster to study the cellular and neuronal components which mediate behavioral tolerance to the anesthetic benzyl alcohol. I demonstrate that rapid tolerance to benzyl alcohol is a pharmacodynamic mechanism independent of drug metabolism. Furthermore, tolerance is a cell autonomous response which occurs in the absence of neural signaling. Using genetic and pharmacological manipulations I find the synapse to play an important role in the development of tolerance. In addition, the neural circuits that regulate arousal and sleep also alter benzyl alcohol sensitivity. Beyond previously described transcriptional mechanisms I find a post-translational role of the Ca2+-activated K+-channel, slowpoke in the development of tolerance. Finally, I explore a form of juvenile onset tolerance, which may have origins that differ from rapid tolerance. The implications of this study go beyond tolerance in Drosophila melanogaster to benzyl alcohol and can shed light on human drug tolerance, withdrawal and addiction. / text
630

Vliv stresu na NADP-dependentní enzymy ve vyšších rostlinách. / The influence of stress on NADP-dependent enzymes in higher plants.

Kovaľová, Terézia January 2012 (has links)
Biotic stress in the form of viral infection, as well as abiotic salt stress, cause leaves injuries, stomata closure and decreased rate of photosynthesis. These factors lead to the limitation of plant growth and to reduced amount of coenzyme NADPH. However NADPH is an important coenzyme for many metabolic pathways such as synthesis of fatty acids, amino acids and secondary metabolites involved in stress responses. NADPH is also a coenzyme for key enzymes of antioxidant system and for many regulatory enzymes. NADP-dependent enzymes are alternative source of NADPH in plants under stress conditions. In this work, activities of four NADP-dependent enzymes: Glucose-6-phosphate dehydrogenase (G6PDH, EC 1.1.1.49), NADP-isocitrate dehydrogenase (NADP-ICDH, EC 1.1.1.42), NADP-malic enzyme (decarboxylating) (NADP-ME, EC 1.1.1.40) and Shikimate dehydrogenase (SDH, EC 1.1.1.25) were studied. Activities of all these enzymes but SDH increased in leaves of tobacco plants (Nicotiana tabacum L.) infected by PVYNTN , The most sensitive enzymes to viral infection were NADP-ICDH and NADP-ME, whose activity was increased in comparison with control plants 3-fold and 2,4-fold, respectively. Changes in activity of studied enzymes were also determined in plants exposed to viral infection in combination with heat-shock...

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