O VEGF é um fator mitogênico específico de células endoteliais que promove diferenciação celular materno-fetal placentária quando ligado a seus receptores (Flt-1 e KDR). Sua expressão é controlada por mecanismos autócrinos e parácrinos e está associada ao desenvolvimento da placenta. A placenta bovina foi utilizada como modelo de estudo por apresentar a facilidade de se avaliar os componentes do sistema VEGF em diferentes fases gestacionais. Como objetivo este estudo buscou analisar o fator de crescimento vascular endotelial (VEGF) e seus receptores através da técnica de PCR em tempo real no início, meio e fim de gestação. Para tanto, amostras de placentomas, região interplacentomal e corpo lúteo foram coletadas em diferentes fases gestacionais. Foram utilizados placentomas de animais clonados obtidos apenas aos 270 dias de gestação e estas amostras foram comparadas aos animais não clonados na mesma fase. A expressão do VEGF no placentoma apresentou um decréscimo (p < 0.05) no final da gestação (270 dias) em relação à expressão do VEGF aos 90 dias. A expressão do Flt-1 e do KDR na região interplacentomal foi semelhante desde os 45 até 90 dias de gestação e apresentou um aumento significativo (p < 0.05) aos 150 dias. No corpo lúteo gestacional, a expressão do VEGF aos 210 dias foi maior (p ≤ 0.05) em relação a 90 e 150 dias; observou-se também baixa expressão do KDR aos 90 dias de gestação (p < 0.05) em relação aos 210 dias. Pode-se concluir que a regulação da expressão do VEGF variou em relação aos seus receptores nos três tecidos avaliados. Placentomas de bovinos clonados não apresentaram diferenças significativas em relação à expressão do sistema VEGF se comparados aos placentomas de animais não clonados sugerindo ser esta expressão equivalente em placentas de animais clonados que vieram a termo. / The VEGF is a specific endothelial mitogenic factor that promotes feto-maternal cell differentiation in placenta through binding to its receptors (Flt-1 and KDR). Their expression is controlled by autocrine and paracrine mechanisms that are associated to placenta development. The bovine placenta was used in this study as a model due to easiness of evaluation of VEGF system components in different phases of pregnancy. The objective of this study was to analyze the vascular endothelial growth factor (VEGF) and its receptors expression using the real time PCR technique in the beginning, half and end of pregnancy. Furthermore, placentome samples, interplacentomal areas and corpus luteum were collected in different gestational phases for comparative studies. Placentome of cloned animals were analyzed at 270 days of pregnancy and compared to non-cloned animals in the same phase. The expression of VEGF in the placentome presented a decrease of expression (p < 0.05) in the end of the gestation (270 days) in relation to 90 days. The expression of Flt-1 and of KDR in interplacentomal area was similar from 45 to 90 days of pregnancy with a significant increase (p <0.05) observed at 150 days. In the gestational corpus luteum, the expression of VEGF at 210 days was higher (p ≤ 0.05) in comparison to 90 and 150 days. In the same tissue KDR expression at 90 days was lower (p < 0.05) in relation to 210 days. In conclusion the regulation VEGF varied in relation to its receptors expression in all three studied tissues. Cloned placentomes showed no significant differences in VEGF system expression compared to the placentome of non-cloned animals, suggesting there is an equivalent expression in placentas from cloned animals that came to term.

Introdução: A rejeição aguda mediada por anticorpos (RAMA) representa atualmente uma importante limitação para o sucesso do transplante renal. Seu diagnóstico é complexo e impreciso e avaliações moleculares com o desenvolvimento de biomarcadores não invasivos podem representar métodos promissores para seu diagnóstico. O objetivo do estudo foi avaliar, em pacientes transplantados renais, a expressão de genes relacionados à rejeição medida por anticorpos e celular, em tecido renal e no sangue periférico. Métodos: Estudo transversal com 56 pacientes transplantados renais divididos nas seguintes categorias diagnósticas de acordo com a classificação Banff 2007: RAMA, rejeição aguda celular (RAC), necrose tubular aguda (NTA), RAMA+RAC e normal. Foi utilizada a técnica de PCR Real-Time para a quantificação relativa dos genes: CD20, CD138, Fator de von Willebrand (FVW), TIM-3 e FOXP-3. Resultados: Pacientes com RAMA apresentaram, tanto no tecido renal quanto no sangue periférico, transcritos de mRNA para CD20 e TIM-3 significativamente aumentados (P<0,01), em relação aos grupos NTA e normal. Outros resultados com expressão significativamente maior na RAMA em relação ao grupo normal foram FOXP-3 no sangue (P<0,01), CD138 na biópsia (P<0,01) e FWV na biópsia e no sangue (P<0,05). As curvas ROC demonstraram áreas sobre a curva (ASC) de 0,950 (P<0,001) para CD20 no sangue periférico. Utilizando o ponto de corte 6,0 obtevese sensibilidade 94% e especificidade 88% para o diagnóstico de RAMA. CD138 no tecido renal apresentou ASC de 0, 905 (P<0,001), e com ponto de corte 6,0 encontrou-se sensibilidade 91% e especificidade 85%. Conclusão: A expressão de CD20, tanto em tecido renal como no sangue periférico, e de CD138 no tecido foram significativamente maiores em pacientes com RAMA. Mais estudos poderão confirmar estes achados e possibilitar a utilização da expressão destes e de outros genes como biomarcadores para o diagnóstico de RAMA. / Introduction: Acute antibody mediated rejection (ABMR) is currently a major limitation to the success of renal transplantation. Its diagnosis is complex and inaccurate and the development of non-invasive biomarkers can represent promising methods for that. The aim of this study was to evaluate, in kidney transplant patients, the expression of genes related to the antibody mediated rejection and cellular, in renal tissue and peripheral blood. Methods: Crosssectional study with 56 kidney transplant patients divided into the following diagnostic categories according by the Banff 2007 classification: ABMR, acute cellular rejection (ACR), acute tubular necrosis (ATN), ACR+ABMR and normal. We used Real Time PCR to quantify relative expression of genes: CD20, CD138, von Willebrand factor (vWF), FOXP-3 and TIM-3. Results: Patients with ABMR presented, both in renal tissue and in peripheral blood, CD20 and TIM-3 mRNA transcripts significantly increased (P <0.01), in relation to groups ATN and normal. Other results with significantly higher expression in ABMR in relation to the normal group were FOXP-3 in the peripheral blood (P <0.01), CD138 in tissue (P <0.01) and vWF renal tissue and blood (P <0.05). The ROC curves demonstrated area under the curve (AUC) of 0.950 (P <0.001) for CD20 in peripheral blood. Using the 6.0 cutoff point was obtained 94% sensitivity and 88% specificity for the diagnosis of RAMA. CD138 in renal tissue showed AUC 0, 905 (P <0.001), and 6.0 cutoff point was found 91% sensitivity and specificity 85%. Conclusion: The expression of CD20, both in renal tissue and in peripheral blood, and CD138 in tissue were significantly higher in patients with ABMR. More studies can confirm these findings and enable the use of the expression of these and other genes as biomarkers for the diagnosis of ABMR.

Introdução: A sobrevivência em curto prazo dos transplantes renais tem melhorado notavelmente nas últimas duas décadas. No entanto, a sobrevivência em longo prazo de enxertos e pacientes ainda são muito inferiores ao desejado e a maioria dos enxertos são perdidos por falecimento dos receptores e deterioração crônica da função do enxerto. Acredita-se que a maior parte das lesões que resultam em encurtamento da sobrevida do enxerto se iniciam logo após o transplante e muitas vezes são subclínicas. O desenvolvimento de biomarcadores não invasivos para identificar com precisão as lesões sub-clínicas, sem a necessidade de biópsias de protocolo, seria um grande passo para a prática clínica de transplantes de órgãos, uma vez que permitiria o reconhecimento precoce de eventos de agressões ao enxerto e poderia levar a adequadas ações terapêuticas potencialmente propiciando sobrevida mais prolongada dos aloenxertos. Objetivos: O objetivo do presente estudo foi avaliar o potencial diagnóstico de agressões sub-clínicas da análise molecular não-invasiva da expressão gênica de leucócitos do sangue periférico em receptores de transplante renal com função estável em curto prazo. Métodos: Cento e trinta e seis pacientes renais com função estável do enxerto foram arrolados no estudo e realizaram biópsia protocolar no 3º mês póstransplante. Foram coletadas amostras de sangue periférico concomitantemente para realizarmos a quantificação da expressão gênica de perforina, TIM3, FOXP3, TGF-B, CTGF e CD138 através da metodologia de PCR em tempo real. Resultados: Trinta e nove pacientes foram diagnosticados com rejeição aguda (28,7%), sendo 33 destes com alterações borderline, 5 com rejeição aguda Banff IA e um paciente com rejeição Banff IB, vinte pacientes apresentaram fibrose intersticial e atrofia tubular (14,7%), sete apresentaram necrose tubular aguda (5,1%), três infecções pelo vírus do polioma (2,2%) e um caso de nefrotoxicidade aguda por inibidores da calcineurina (0,8%). A mensuração da expressão gênica foi realizada através de qPCR e os pacientes com disfunção do enxerto apresentaram expressões diminuídas de perforina, TIM3, FOXP3 e TGF-β em relação aos pacientes com rejeição aguda e histologia normal do enxerto. Outras análises demonstraram que a perforina, TIM3 e FOXP3 também são capazes de excluir o diagnóstico de rejeição aguda, com valores preditivos negativos (VPN) de 83%, 83% e 79,6%, respectivamente. Em uma análise combinada dos 3 genes associados o VPN para rejeição aguda foi de 86.4%. A avaliação do RNA mensageiro dos genes TGF-B e CTGF mostrou que eles estão hiperexpressos nos enxertos com fibrose intersticial e atrofia tubular. Conclusões: Existe uma elevada incidência de agressões sub-clínicas dos enxertos renais que podem ser detectadas por biópsias protocolares. A mensuração do RNA mensageiro, em amostras do sangue periférico, mostrou ser uma ferramenta de potencial utilidade em identificar essas agressões de forma não-invasiva. / Background: Short term survival of kidney transplants has improved remarkably over the last two decades. However, long term survival of grafts and patients are still much lower than desired and most of the grafts are lost by recipients’ death and chronic graft function deterioration. It is believed that most of the injuries that result in graft shortening survival are initiated early after transplantation and many times are subclinical. The development of noninvasive biomarkers to accurately identify sub-clinical injuries, without the need of protocol biopsies, would be a major step forward in the practice of clinical organ transplantation since it would allow the early recognition of graft insulting events and lead to proper therapeutic actions potentially leading to more prolonged allograft survivals Objective: The aim of the present study was to evaluate the diagnosis potential of the non-invasive molecular analyzes of peripheral blood leukocytes gene expression in stable kidney recipients in the short-term. Methods: One hundred and thirty-six patients were enrolled in this study and underwent protocol biopsies at 3 months after grafting. Peripheral blood samples were collected concomitantly for the gene expression quantitation of perforin, TIM3, FOXP3, TGF-B, CTGF and CD138 through qPCR methodology. Results: Thirty-nine patients were diagnosed as acute rejection (28.7%), being 33 with borderline histological changes, 5 Banff IA acute rejection and 1 patient with Banff IB acute rejection, twenty patients had interstitial fibrosis and tubular atrophy (14.7%), seven had acute tubular necrosis (5.1%), three had poliomavirus infection (2.2%) and one patient had calcineurin inhibitor toxicity (0.8%). Gene expression was measured through qPCR and patients with graft dysfunction presented lower expressions of perforin, TIM3, FOXP3 and TGF-β than patients with acute rejection and normal graft histology. Other analyzes showed that perforin, TIM3 and FOXP3 are also able to rule out acute rejection, with negative predictive values (NPV) of 83%, 83% and 79.6% respectively. In a combined analysis of the 3 genes associated the NPV was 86.4%. CTGF and TGF-B mRNA were overexpressed in grafts with interstitial fibrosis and tubular atrophy. Conclusions: An elevated incidence of sub-clinical injuries can be detected by protocol biopsies of stable grafts. The evaluation of mRNA in the peripheral blood has shown to be a potentially useful tool to uncover these injuries noninvasively.

O estudo da expressão gênica é de grande aplicabilidade nas áreas de pesquisa científica e clínica. Por ser um método pouco invasivo e permitir coletas seriadas, a utilização de amostras sanguíneas facilita a análise da transcrição gênica. O maior desafio para a precisão nos ensaios moleculares é manter uma amostra com qualidade desde a coleta, armazenamento e transporte até o momento de sua análise. Este estudo utilizou um sistema de conservação de RNA sanguíneo que manteve amostras de qualidade após a coleta, transporte e armazenamento, permitindo extração de RNA e identificação da expressão do gene MDR1 em cavalos da raça Crioulo. Foram coletadas amostras sanguíneas de 27 cavalos a campo em tubos PAXgene® Blood RNA, que após o transporte e armazenamento a -20°C por 90 dias foram processadas em laboratório. A extração do RNA sanguíneo foi realizada com o kit Nucleo Spin® RNA II, a conversão em cDNA foi com o kit High-Capacity cDNA Reverse Transcription, utilizando a fluorimetria para as avaliações. A identificação da expressão do gene MDR1 em sangue conservado utilizou primer específico para cDNA e PCR em tempo real. Houve extração de RNA em todas as amostras coletadas, sendo que as leituras das concentrações de RNA das amostras com DNA contaminante não tiveram diferença estatística das amostras sem DNA contaminante. Ocorreu amplificação do gene MDR1 a partir do RNA das amostras, independente de contaminação de DNA. A coleta de sangue venoso dos cavalos a campo com os tubos PAXgene foi realizada sem complicações. A amplificação do mRNA com primer específico para transcrito do gene MDR1, de amostras submetidas aos métodos de coleta, armazenamento e processamento executados neste trabalho, confirma que o mRNA extraído, com a metodologia descrita, é viável, sendo sua expressão identificada em leucócitos sanguíneos de equinos da raça Crioulo. / Efficient nucleic acid extraction methods are paramount for gene expression studies and applications in the scientific and clinical research. Whole blood samples provide material for gene transcription analysis allowing serial trials with a not much invasive procedure. Still, a major challenge for molecular assays accuracy and reliability is to maintain RNA stability during sample collection and storage. A whole blood collection system for RNA preservation was used during collection, transport and storage of samples intended for RNA extraction and identification of the MDR1 gene in Crioulo horses. The blood samples were obtained from 27 horses in the field using the PAXgene® Blood RNA tubes. After 2h transport at room temperature, the samples were stored at -20oC for 90 days before processing. RNA extraction was performed with the Nucleo Spin® RNA II kit and cDNA conversion carried out with the High-Capacity cDNA Reverse Transcription kit. RNA concentration was determined by fluorometry. MDR1 gene expression was assessed using real time polymerase chain reaction (PCR) with a specific primer for cDNA. RNA was successfully extracted from all samples. Total RNA yield from DNA contaminated samples was not statistically different from those without DNA contamination. MDR1 gene amplification occurred regardless of DNA contamination. There were no complications during horse handling and blood sampling direct into PAXgene tubes in the field. Successful amplification of MDR1 gene transcript with a specific primer showed that blood samples collected, stored and processed under the described methodology provided viable mRNA for down-stream applications of molecular analyses. This study allowed the identification of the gene MDR1 in blood leucocytes of Crioulo horses.

Orientadores: Luiz Carlos Zeferino, Sílvia Helena Rabelo dos Santos / Tese (doutorado) - Universidade Estadual de Campinas, Faculdade de Ciências Médicas / Made available in DSpace on 2018-08-16T11:45:16Z (GMT). No. of bitstreams: 1 Carvalho_MichelleGarciaDiscacciatide_D.pdf: 2416943 bytes, checksum: 7ae180b100a5541dc5c50b8bdb0b5202 (MD5) Previous issue date: 2010 / Resumo: A avaliação das taxas de evolução da NIC 2 e a identificação de aspectos clínicos e marcadores preditivos de regressão desta lesão podem identificar as mulheres que se beneficiariam de uma conduta expectante e seguimento periódico. Objetivo: Avaliar alguns fatores clínicos e moleculares associados à progressão e regressão da NIC 2, em mulheres submetidas à conduta expectante. Sujeitos e Métodos: O estudo foi do tipo coorte e incluiu 50 mulheres com diagnóstico de NIC 2 confirmado por biópsia, após serem referenciadas ao Centro de Atenção Integral à Saúde da Mulher (CAISM), Universidade Estadual de Campinas (UNICAMP), por apresentaram exame citopatológico mostrando lesão intraepitelial escamosa de baixo grau (LIEBG). Estas mulheres foram acompanhadas por 12 meses, com consultas trimestrais para avaliação citológica e colposcópica. Na admissão, foram coletadas amostras para a realização de testes de genotipagem de HPV, os quais foram realizados no Instituto Ludwig de Pesquisa Sobre o Câncer; e também para testes de detecção de RNA mensageiro dos genes E6/E7 dos HPV tipos 16,18,31,33 e 45, realizados no Laboratório Salomão & Zoppi. Os resultados deste estudo estão sendo apresentados em dois artigos. O primeiro avaliou a frequência de progressão, persistência e regressão da NIC2, como também testou se a idade da mulher no diagnóstico e idade ao início da atividade sexual variaram com a evolução da lesão. O segundo artigo avaliou a associação dos tipos e espécies de HPV e da expressão dos genes virais E6 e E7 com a evolução de NIC 2. Resultados: Ao final de 12 meses houve 74% de regressão, 24% de progressão de NIC 2 para NIC 3, e um caso de persistência da NIC 2. A maioria dos casos regrediu nos primeiros seis meses de seguimento. Não foi observada associação entre a evolução de NIC 2 e a idade ou início da atividade sexual em mulheres submetidas à conduta expectante. As taxas de regressão da NIC 2 aos 12 meses de seguimento, para mulheres com HPV da espécie alfa-9, comparada com outras espécies ou HPV negativo foram 69,4 e 91,7% respectivamente, sendo que esta diferença foi estatisticamente significativa ao longo do seguimento. A taxa de regressão de NIC 2 aos 12 meses foi de 68,3% para mulheres com teste positivo para RNA mensageiro de E6/E7 e 82,6% para mulheres com teste negativo para este marcador, mas esta diferença não foi estatisticamente significativa. Conclusão: A maioria da NIC 2 diagnosticada por biópsia em mulheres selecionadas por exame citológico com diagnóstico de lesão LIBG regride em até 12 meses. Mulheres infectadas por tipos de HPV da espécie alfa-9, especialmente o HPV 16, são menos propensas a ter regressão da NIC 2 ao final de 12 meses de seguimento. Os resultados não demonstraram associação entre a expressão de genes virais E6/E7 com a regressão ou progressão da NIC 2 / Abstract: The evaluation of CIN 2 outcome rates and identification of clinical features and predictive markers of the lesion regression can identify women who would benefit from an expectant management and regular monitoring. Objective: To evaluate the clinical and molecular factors associated with progression and regression of CIN 2 in women undergoing expectant management. Subjects and Methods: This cohort study included 50 women with diagnosis of CIN 2 confirmed by biopsy after being referenced to the Center of Integral Attention to Women's Health, State University of Campinas, with Pap smear showing low-grade lesion (LSIL). These women were followed for 12 months with three-monthly controls visits for cytological and colposcopic evaluation. On admission, samples were collected to perform HPV genotyping, which was held at the Ludwig Institute and also for the detection of E6/E7 mRNA, which was performed in the laboratory Salomão & Zoppi. The results of this study are presented in two articles. The first assessed the frequency of progression, persistence and regression of CIN2, comparing these rates with clinical factors such as woman's age and age at first sexual intercourse. The second evaluated the association between CIN 2 evolution with the HPV species and expression of viral genes E6 and E7. Results: At the end of the 12 months of monitoring, there was 74% of regression, 24% of progression to CIN 3 and only one case of persistence of CIN 2. The most of the CIN 2 regresses during the first six months of follow-up. However, there was no statistically significant association between the women' age and the age at first sexual intercourse. The rate of CIN 2 regression at 12 months follow-up for women with HPV alpha- 9 compared with another HPV species groups or HPV negative were respectively 69,4% and 91,7%, and the difference up to 12-month follow-up was statistically significant. The CIN 2 regression rate at 12-month follow-up for women with positive E6/E7 mRNA was 68.3%, and for negative was 82.6%, but the difference up to 12-month follow-up was not statistically significant. Conclusion: The majority of CIN 2 diagnosed by biopsy in women with previous cervcial smear showing LSIL regresses after 12 months. Women infected with HPV alpha-9, which includes HPV 16, are less likely to have CIN 2 regression over 12 months of follow-up. The results showed no association between the expression of viral genes E6 and E7 with the regression or progression of CIN 2 / Doutorado / Ciencias Biomedicas / Doutor em Tocoginecologia

CoordenaÃÃo de AperfeiÃoamento de Pessoal de NÃvel Superior / Este trabalho tem como objetivo 1) avaliar o efeito da BMP-15 e do FSH, sozinhos ou em diferentes associaÃÃes sobre o crescimento, sobrevivÃncia e formaÃÃo de antro em folÃculos secundÃrios bovinos e 2) avaliar os nÃveis de expressÃo do RNAm para os receptores de BMP-15 (BMPR-IB e BMPR-II) em folÃculos crescidos in vitro. Com relaÃÃo ao cultivo, folÃculos secundÃrios foram microdissecados e cultivados por doze dias em &#945;-MEM+ sozinho, ou suplementado com BMP-15 e/ou FSH, sozinhos ou em diferentes associaÃÃes. ApÃs o cultivo, foram avaliados o diÃmetro folicular, a viabilidade e a taxa de formaÃÃo de antro. A anÃlise de expressÃo gÃnica foi realizada por PCR em tempo real, utilizando folÃculos cultivados nos diferentes tratamentos, para comparaÃÃes dos nÃveis de RNAm. ApÃs o perÃodo de cultivo verificou-se que a utilizaÃÃo da BMP+FSH (0-12) estimulou um aumento significativo no diÃmetro folicular em relaÃÃo aos demais tratamentos (p<0,05), bem como estimulou a formaÃÃo da cavidade antral de forma mais efetiva que o controle (MEM) e a BMP-15 sozinha (p<0,05). No entanto, em relaÃÃo à sobrevivÃncia, apÃs12 dias o tratamento BMP+FSH (0-12) reduziu significativamente a viabilidade folicular em relaÃÃo aos demais tratamentos (p<0,05). Os resultados mostraram que os nÃveis de RNAm para o receptor de BMP-15 do tipo I (BMPR-IB) foram significativamente maiores nos folÃculos cultivados com MEM quando comparado aos demais tratamentos, enquanto que os nÃveis de RNAm para o receptor do tipo II (BMPR-II) nÃo diferiram entre os tratamentos. Os maiores nÃveis de RNAm para o receptor de FSH foram detectados em folÃculos cultivados com BMP-15 sozinha. Em conclusÃo, este estudo demonstrou que a combinaÃÃo de BMP-15 + FSH durante todo o perÃodo de cultivo (D0-D12) acelera o crescimento de folÃculos prÃ-antrais bovinos cultivados por 12 dias, mas este efeito reduz a viabilidade folicular, afetando a integridade ultra- estrutural dos folÃculos. AlÃm disso, a adiÃÃo de BMP isoladamente aumentou os nÃveis de expressÃo de RNAm para FSHR apÃs 12 dias de cultivo,mostrando que BMP-15 e FSH podem contribuir significativamente para o desenvolvimento in vitro de folÃculos prÃ-antrais cultivados por 12 dias nesta espÃcie. / This study aims to 1) evaluate the effect of BMP-15 and FSH, alone or in different combinations on the in vitro development, survival and antrum formation of bovine secondary follicles and 2) quantify the levels of mRNA expression for BMP-15 receptors (BMPR-IB and BMPR-II), FSH receptor and Kit Ligand in follicles grown in vivo and in vitro. With regard to culture, secondary follicles were microdissected and cultured for twelve days in &#945;- MEM+ alone, or supplemented with BMP-15 and/or FSH, alone or in various associations. After culture, follicular diameter were evaluated, viability and rate of antrum formation. For the analyzes gene expression, by real time PCR, were used follicles cultured in the different treatments for comparisons of the levels of mRNA. After the culture period it was found that the association of BMP+FSH (0-12) stimulated a significant increase in follicular diameter in relation to other treatments (p<0.05), as well as stimulated the formation of antral cavity more effectively the control (MEM) and BMP-15 alone (p<0.05). However, for survival, after 12 days treatment BMP+FSH (0-12) significantly reduced follicular viability when compared to other treatments (p<0.05). The results showed that the levels of mRNA for BMP receptor type I (BMPR-IB) were significantly higher in follicles cultured with MEM when compared to other treatments, while levels of mRNA for the receptor type II (BMPR-II) did not differ between treatments. The highest levels of mRNA for the FSH receptor were detected in follicles cultured with BMP-15 alone. In conclusion, this study demonstrated that combination of BMP-15+FSH (D0-D12) accelerates the growth of bovine preantral follicles cultured for 12 days, but this effect reduces the follicular viability, affecting the ultrastructural integrity of the follicles. Furthermore, the addition of BMP alone increased expression levels of RNAm for FSHR after 12 days of culture , showing that BMP-15 and FSH may contribute significantly to the in vitro development of preantral follicles cultured for 12 days in this specie.

Les ARNm codent pour les protéines, tandis qu'un grand nombre d'ARNs nommés longues ARNs non codants (ARNlnc) ne sont pas traduites en protéines. Les deux types d’ARNs existent en isoforms qui se distinguent à cause de l’épissage alternatif. Certains des ARNlnc jouent des rôles importants dans la croissance et différentiation cellulaire. Cependant, leurs fonctions dans la cytotoxicité de la chimiothérapie anti-cancéreuse médicamenteuse utilisant le 5-fluorouracile (5-FU) sont encore inconnues. Pendant mes travaux j'ai trouvé que le traitement par le 5-FU cause l’accumulation des ARNlnc. Ce phénomène est parfois, sous forme d’ARN double brin (ARNds) formé par une paire de transcrits chevauchant, corrélé négativement avec le niveau de la protéine codée par l'ARNm. Cette inhibition potentielle de la traduction des régulateurs du cycle cellulaire clés et les gènes essentiels en formant des l'ARNds peut éventuellement empêcher la progression du cycle cellulaire. Nos analyses prometteuses devraient inspirer des études approfondies des ARNlnc dans la cytotoxicité du 5-FU chez la levure et l’homme afin d’'améliorer la chimiothérapie. J'ai trouvé que la surexpression de RRP6, peut conduire à une résistance accrue au traitement par le 5-FU. Je démontre ensuite que l’ARNlnc MUT1312 forme des ARNds avec RRP6 qui sont négativement corrélés avec le niveau de la protéine Rrp6. Par ailleurs, la surexpression de MUT1312 pendant la mitose et associé avec une diminution d’Rrp6. Ainsi, mon étude suggère que MUT1312 soit impliqué dans la régulation de Rrp6 pendant la differentiation cellulaire. Mes recherches de MUT477/SWI4 indiquent la function importante de la méiose induite à long ARN non codantes en tant que forme d'ARN double brin potentiellement réguler la traduction. J'ai trouvé que SUT200 pourrait inhiber la transcription de CDC6 durant la méiose par read-through. Un cas comparable est MUT1465 et CLN2. J’ai fait un criblage in silico pour trouver des facteurs de transcription qui activent des MUTs durant la méiose. J’ai trouvé que la plupart des MUTs sont induites par Ndt80. MUT1465 est parmi eux : il pourrait être induite par Ndt80 ce qui inhiberait l’expression de CLN2 après l’initiation de la méiose. J’ai trouvé que la répression de certains MUTs par le complexe Ume6/Rpd3 en mitose est différemment régulée entre JHY222 et SK1. MUT100 qui ne possède pas l'élément USR1 fixé par Ume6, et qui est donc une cible indirecte, est déréprimé dans JHY22 ume6 mais pas dans SK1 ume6. Pour la régulation de l'étude de isoforme méiose, Nous avons trouvé que le complexe histone déacétylase Rpd3/Sin3/Ume6, empêche également l'induction de l'isoforme longue de BOI1 dans la mitose par liaison directe de liaison Ume6 à sa cible de URS1. Orc1 est importante pour la réplication de l'ADN. J’ai démontré que mORC1 est une cible directe de l'activateur Ndt80 et que son motif de fixation (MSE) est nécessaire pour l'induction de l’isoforme mORC1 et du gene méiotique SMA2 transcrit de façon divergente. J’ai trouvé qu'une souche incapable d’induire mORC1, contient des niveaux anormalement élevés d’Orc1 pendant la gamétogenèse, ce qui corréle mORC1 avec la baisse de la protéine Orc1. En conclusion, mes études au cours du doctorat révèlent des nouvelles cibles et ainsi offrent des nouvelles perspectives de l’amélioration de la chimiothérapie par le 5-FU. Les mécanismes incluent la formation d'un ARN double brin avec son ARNm anti-sens pour potentiellement inhiber la traduction de l'ARNm, et inhibition en aval de l'ARNm par transcription read-through d’une ARNlnc. Mon travail a également révélé un mécanisme de régulation des ARNlnc et les isoforms d’ARN pendent la croissance et la différentiation cellulaire. / RNAs are molecules with important functions in diverse cellular processes. mRNAs encode proteins, while a large number of RNAs called long noncoding RNAs (lncRNAs) are not translated into proteins. Both types of RNAs exist in various isoforms due to alternative splicing.Some of lncRNA play important roles in cell growth and differentiation. However, their functions in the cytotoxicity of the drug anticancer chemotherapy using 5-fluorouracil (5-FU) are still unknown. During my research I found that treatment with 5-FU causes accumulation of lncRNA. Acuumulated antisense lncRNA form double stranded RNA with the mRNAs , negatively correlated with the level of the protein encoded by the mRNA. This potential inhibition of translation of key cell cycle regulators and essential genes by forming dsRNA may possibly prevent the progression of the cell cycle. My results suggest that lncRNA are likely to play an important role in the cytotoxicity of 5-FU. Our promising testing should inspire in-depth studies of lncRNA in the cytotoxicity of 5-FU in yeast and humans to improve chemotherapy.Rrp6 is a 3'-5 'exoribonuclease, which plays an important role in the regulation and modification of rRNA, mRNA and lncRNA. I found that overexpression of RRP6, the homologue of the yeast EXOSC10 gene in mammals, can lead to increased resistance to treatment with 5-FU. I found that the lncRNA MUT1312 form dsRNA with RRP6 that are negatively correlated with the level of Rrp6 protein. Furthermore, overexpression of MUT1312 during mitosis and associated with a decrease of Rrp6. Thus, my study suggests that MUT1312 may involved in the regulation of Rrp6 during cell differentiation. I further explored the function of the double-stranded RNA in meiosis. My research about SWI4/MUT477 indicates the important function of meiosis induced long noncoding RNA as a form of double-stranded RNA potentially regulate translation. Another aspect of the function of lncRNA is to regulate the transcription of downstream mRNA. I found SUT200 could inhibit transcription of CDC6 during meiosis by read-through. A similar case is CLN2/MUT1465. I did an in silico screening to find transcription factors that activate MUTs during meiosis. I found that most MUTs are induced by Ndt80. MUT1465 is among them: it could be induced by Ndt80 which inhibit the expression of CLN2 after initiation of meiosis. I found that repression of certain MUTs by the Ume6 / Rpd3 complex in mitosis is regulated differently between JHY222 and SK1. MUT100 which does not have the Ume6 binding site URS1 element, and is therefore an indirect target is derepressed in JHY22 ume6 but not in SK1 ume6. For the study about regulation of meiosis isoform, we have found that the histone deacetylase complex Rpd3 / Sin3 / Ume6 prevents the induction of long isoform BOI1 in mitosis by direct binding Ume6 binding to its target URS1.Orc1 is important for DNA replication. I have demonstrated that mORC1 is a direct target of the Ndt80 activator and its binding motif (MSE) is required for induction of isoform mORC1 and meiotic gene SMA2 divergently transcribed. I found that a strain incapable of inducing mORC1 contains abnormally high levels of Orc1 during gametogenesis, which correlates with mORC1 declining Orc1 protein. Since eukaryotic genes often encode multiple transcripts with 5'-UTR of variable length, the findings are likely relevant to gene expression during development and disease in higher eukaryotes. In conclusion, my studies during PhD reveal new targets and thus offer new prospects for improving chemotherapy with 5-FU. Mechanisms include (1) the formation of a double strand with its antisense mRNAs to potentially inhibit translation of mRNA, and (2) downstream inhibition of mRNA transcription read-through of a lncRNA. My work also revealed a lncRNA regulatory mechanism and RNA isoforms dangling growth and cell differentiation.

Le système de contrôle appelé dégradation des ARNm non-sens (NMD) permet de détecter puis de dégrader des ARNm contenant un codon de terminaison prématuré (PTC). Les facteurs principaux de la NMD : UPF1, UPF2 et UPF3 reconnaissent les PTCs en interagissant avec les facteurs de terminaison eRF1, eRF3 et la protéine Poly(A) binding (PABP). La reconstitution d’un système de traduction in vitro a permis d’étudier la terminaison de la traduction en présence des facteurs PABP et UPF1, à l’aide de méthodes de biochimie et de cryo-microscopie électronique. L’étude du rôle du facteur de NMD UPF3B dans la terminaison de la traduction a mis en évidence une double action de cette protéine ; tout d’abord, un retardement de la reconnaissance du codon stop et également la promotion de la dissociation du ribosome. Ce travail a également permis de mettre en évidence une nouvelle interaction entre UPF3B et la kinase SMG1-8-9 et de montrer comment cette interaction affecte l’état de phosphorylation de UPF1. Les résultats de cette étude montrent une interaction complexe entre les différents facteurs de NMD et la kinase SMG1. / Nonsense-mediated mRNA decay (NMD) is an important eukaryotic quality control mechanism that recognizes and degrades mRNA containing a premature termination codon (PTC). Up-frameshift proteins constitute the conserved core NMD factors (UPF1, UPF2 and UPF3). They mediate the recognition of a NMD substrate, i.e. a ribosome stalled at a PTC. UPF proteins were shown to associate with eukaryotic release factors (eRF1 and eRF3) and were suggested to impede translation termination. We showed that, at a normal termination codon, Poly(A)-binding protein (PABP) stimulates translation termination by directly interacting with eRF3a. Using a reconstituted in vitro translation system, we studied translation termination in the presence of the factors PABP and UPF1 using biochemistry and single particle electron cryo-microscopy (Cryo-EM). Additionally, we analysed the role of the other NMD factors UPF2 and UPF3B in translation termination in vitro. We discovered a novel role for UPF3B in translation termination. Moreover, we observed a novel interaction between UPF3B and the SMG1-8-9 kinase complex. The presence of UPF3B affects the kinase activity of SMG1 and thus the phosphorylation state of UPF1. Our results highlight a much more complex interplay of the NMD factors with the translation termination machinery and SMG1 kinase than anticipated.

Abstract Collagen prolyl 4-hydroxylase (C-P4H) plays a central role in the biosynthesis of collagens by hydroxylating proline residues. The enzyme has been a subject of intense interest as a target enzyme for drug development. The recombinant expression of human C-P4H in prokaryotes has not yet been described. This work reports on the development of an expression system for human C-P4H in E. coli. The vertebrate C-P4H enzymes are α2β2 tetramers, consisting of two β subunits which are identical to protein disulphide isomerase (PDI), aside from the two α subunits which have the catalytic activity. The function of PDI is to keep the α subunit in a soluble and active state. Therefore, the expression system should assure the expression of the β subunit in the cell before the α subunit by using two different promoters. An active C-P4H tetramer was obtained in the periplasm of E. coli. However, further optimization for production by stepwise regulated coexpression of its subunits in the cytoplasm of a thioredoxin reductase and glutathione reductase mutant E. coli strain resulted in large amounts of human C-P4H tetramer. The exchange of four rare E. coli codons of the pdi gene and the optimized distance between ribosome binding site and translation initiation, resulted in 50-fold P4H-activity and 25 mg/l purified enzyme. Comparison of the expression level of mRNA from the α and β subunits by Sandwich hybridization identified single induction with anhydrotetracycline in fed-batch fermentations as a limiting parameter. This caused an insufficient expression level of mRNA and thereby a low yield of C-P4H. A maximum yield was obtained by repeated addition of anhydrotetracycline that led to higher mRNA levels and increased productivity. A newly developed stochastic simulation model of translational ribosome traffic in bacteria assesses the effect of codon usage to ribosome traffic and to the overall translation rate and mRNA stability. Using human PDI, it was shown that substitution of four 5' codons of the human PDI sequence that are rare in E. coli sequences, by synonymous codons preferred in E. coli led to a 2-fold increase of total PDI amount and even to a 10-fold increase of soluble PDI amount.

Messenger RNAs are transcribed and co-transcriptionally processed in the nucleus, and transported to the cytoplasm. In the cytoplasm, mRNAs serve as the template for protein synthesis and are eventually degraded. The removal of intron sequences from a precursor mRNA is termed splicing and is carried out by the dynamic spliceosome. In this thesis, I describe the regulated splicing of two transcripts in Saccharomyces cerevisiae. I also describe a study where the mechanisms that control the expression of magnesium transporters are elucidated. The pre-mRNA retention and splicing (RES) complex is a spliceosome-associated protein complex that promotes the splicing and nuclear retention of a subset of pre-mRNAs. The RES complex consists of three subunits, Bud13p, Snu17p and Pml1p. We show that the lack of RES factors causes a decrease in the formation of N4-acetylcytidine (ac4C) in tRNAs. This phenotype is caused by inefficient splicing of the pre-mRNA of the TAN1 gene, which is required for the formation of ac4C in tRNAs. The RES mutants also show growth defects that are exacerbated at elevated temperatures. We show that the temperature sensitive phenotype of the bud13Δ and snu17Δ cells is caused by the inefficient splicing of the MED20 pre-mRNA. The MED20 gene encodes a subunit of the Mediator complex. Unspliced pre-mRNAs that enter the cytoplasm are usually degraded by the nonsense-mediated mRNA decay (NMD) pathway, which targets transcripts that contain premature translation termination codons. Consistent with the nuclear retention function of the RES complex, we find that NMD inactivation in the RES mutants leads to the accumulation of both TAN1 and MED20 pre-mRNAs. We also show that the cis-acting elements that promote RES-dependent splicing are different between the TAN1 and MED20 pre-mRNAs. The NMD pathway also targets transcripts with upstream ORFs (uORFs) for degradation. The ALR1 gene encodes the major magnesium importer in yeast, and its expression is controlled by the NMD pathway via a uORF in the 5’ untranslated region. We show that the ribosome reaches the downstream main ORF by a translation reinitiation mechanism. The NMD pathway was shown to control cellular Mg2+ levels by regulating the expression of the ALR1 gene. We further show that the NMD pathway targets the transcripts of the vacuolar Mg2+ exporter Mnr2p and the mitochondrial Mg2+ exporter Mme1p for degradation. In summary, we conclude that the RES complex has a role in the splicing regulation of a subset of transcripts. We also suggest a regulatory role for the NMD pathway in maintaining the cellular Mg2+ concentration by controlling the expression of Mg2+ transporters.