Submitted by Erika Demachki (erikademachki@gmail.com) on 2014-10-14T20:46:44Z No. of bitstreams: 2 Dissertação - Jeany Camelo Santos - 2013.pdf: 1042379 bytes, checksum: 0e6b3b41192470d2c48f4809f1e9d49b (MD5) license_rdf: 23148 bytes, checksum: 9da0b6dfac957114c6a7714714b86306 (MD5) / Approved for entry into archive by Jaqueline Silva (jtas29@gmail.com) on 2014-10-16T18:23:59Z (GMT) No. of bitstreams: 2 Dissertação - Jeany Camelo Santos - 2013.pdf: 1042379 bytes, checksum: 0e6b3b41192470d2c48f4809f1e9d49b (MD5) license_rdf: 23148 bytes, checksum: 9da0b6dfac957114c6a7714714b86306 (MD5) / Made available in DSpace on 2014-10-16T18:23:59Z (GMT). No. of bitstreams: 2 Dissertação - Jeany Camelo Santos - 2013.pdf: 1042379 bytes, checksum: 0e6b3b41192470d2c48f4809f1e9d49b (MD5) license_rdf: 23148 bytes, checksum: 9da0b6dfac957114c6a7714714b86306 (MD5) Previous issue date: 2013-03-27 / The CML is a expansion clonal of cells progenitors hematopoietics and is associated to an specific genetic lesion, known as the Philadelphia chromosome, product of the reciprocal translocation t(9, 22)(q34, q11) that causes the oncogene BCR-ABL. The TP53 is a tumor suppressor gene located on the chromossome 17p13.1 coding for phosphoprotein TP53. The polymorphism arises from the exchange of G for C at codon 72, resulting the genotypes Arg/Arg, Arg/Pro and Pro/Pro. This study aims to determine the allelic and genotypic frequencies of TP53 polymorphism at codon 72 in CML patients and to correlate with the response to imatinib therapy. The work had the participation of 85 CML patients treated at the Clinic of Hematology, at Hospital das Clínicas – UFG in Goiânia city, state of Goiás for the diagnosis and control of disease. To investigate the allelic and genotypic frequencies, DNA samples were isolated from peripheral blood for analysis of PCR reactions. For genotyping, forward and reverse primers were used for each variant allelic. The study had the participation of 85 CML patients, which 69 were in chronic phase, eight in accelerated phase and only one in blast crisis. The mean age was 51 years and eight months. The frequency of genotypes Pro/Pro, Arg/Pro and Arg/Arg was 11% (4/35) 43% (15/35) 46% (16/35) for patients resistant to imatinib treatment (group case) and 16% (8/50) 62% (31/50) and 22% (11/30) for patients with response to imatinib (control group), respectively. The population in this study is in Hardy-Weinberg Equilibrium (x2 = 1, 12, P> 0, 05). Regarding age, gender, disease stage, and score Sokal not observed an association of the disease with the response or resistance to treatment (P= 0,36; P = 0.82, P = 0.47 and P = 0.72), respectively. When we evaluated the genotypes with respect to the Score Sokal (High x Intermediate/Low), it was observed that Pro/Pro genotype was significantly lower in the high Sokal Score group than Intermediate/low (P = 0.017, OR = 8, 19). For criterion, age over 40 years old at diagnosis, by analyzing the Fisher’s test, we found that patients carrying the Arg/Arg genotype are four times more susceptible to produce any resistance to imatinib therapy. When we evaluated the variables age, gender, disease phase, genotype and Sokal Score in logistic regression showed that only the variable genotype was significant (P = 0.0159). Our results are not according to the previous studies, in which suggest that the Pro/Pro genotype and the Pro allele can check risk of developing disease or resistance to imatinib treatment. Our findings suggest that patients carrying the Arg/Pro and Pro/Pro genotypes responded well to treatment and that the Pro/Pro genotype represented an indicator for a good prognosis. Genotype Arg/Arg represented a risk factor in genetic susceptibility in CML’s pathogenesis, contributing for a worse outcome. / A LMC caracteriza-se por uma expansão clonal de células progenitoras hematopoiética e está associada a uma alteração citogenética, conhecida como o cromossomo Philadelphia (Ph+), produto de uma translocação recíproca t(9q34;22q11), gerando a proteína híbrida BCR-ABL. O gene TP53 é um gene supressor tumoral está localizado no braço curto do cromossomo 17 (17p13.1) que codifica uma proteína fosfonuclear a TP53. O polimorfismo desse gene, envolve uma troca de uma única base guanina (G) por uma citosina (C) no códon 72, originando os genótipos Arg/Arg, Arg/Pro e Pro/Pro. Este trabalho tem como objetivo determinar as frequências alélicas e genotípicas do polimorfismo de TP53 no códon 72 em pacientes com LMC e correlacionar com a resposta ao tratamento com imatinibe. O trabalho contou com a participação de 85 pacientes com LMC atendidos no serviço do Ambulatório de Hematologia do HC (Hospital das Clínicas) da UFG, na cidade de Goiânia, Goiás, para o diagnóstico e controle da doença. A idade, o sexo, a fase da doença, o Índice Sokal e resposta e resistência ao tratamento, foram levados em consideração. Para investigar as frequências alélicas e genotípicas, amostras de DNA foram isoladas do sangue periférico para posterior análise em reações de PCR. Para a amplificação das regiões de interesse, primers específicos forward e reverse foram utilizados. Dos 85 pacientes portadores de LMC, 69 pacientes estavam na fase crônica, oito na fase acelerada e um na crise blástica. A média de idade foi de 51 anos e oito meses. A frequência dos genótipos Pro/Pro, Arg/Pro e Arg/Arg foi 11% (4/35), 43% (15/35) e 46% (16/35) para pacientes com resistência ao tratamento com imatinibe (grupo caso) e 16% (8/50), 62% (31/50) e 22% (11/30) para pacientes com resposta ao tratamento (grupo controle), respectivamente. A população do presente estudo está em Equilíbrio de Hardy Weinberg (x2 = 1, 12; P > 0, 05). Quanto à idade, sexo, fase da doença e índice Sokal não se observou associação com a resposta e resistência ao tratamento (P= 0,36; P= 0,82; P=0,47 e P=0,72), respectivamente. Quando avaliou-se os genótipos com relação ao Índice Sokal (Alto x Intermediário/baixo), observou-se que Pro/Pro, foi significativamente menor no grupo com Índice Sokal alto (P=0,017; OR=8,19). Para o critério idade acima de 40 anos no diagnóstico da doença, através da análise do Teste de Fisher, observou-se que pacientes homozigotos para o genótipo Arg/Arg são quatro vezes mais susceptíveis a apresentar algum tipo de resistência ao tratamento com imatinibe. Quando avaliou-se as variáveis: idade, sexo, fase da doença, genótipos e Índice Sokal na regressão logística, observou-se que somente a variável genótipo foi significativa (P= 0,0159). Nossos resultados divergem dos dados apresentados pela literatura sobre a LMC, que sugerem que o genótipo Pro/Pro ou alelo Pro, pode conferir risco de desenvolver a doença ou resistência ao tratamento com imatinibe. Nossos achados sugerem que pacientes Arg/Pro e Pro/Pro, responderam bem ao tratamento e que o genótipo Pro/Pro, representou um indicador para um bom prognóstico. O genótipo Arg/Arg representou um fator de risco na susceptibilidade genética à patogênese da LMC, contribuindo para um pior prognóstico da doença.

Le carcinome hépatocellulaire (CHC) est fréquent dans les régions tropicales, où son diagnostic est tardif et les traitements inefficaces. Pour permettre un diagnostic précoce, il faut identifier des marqueurs moléculaires spécifiques au CHC et détectables dans des prélèvements simples à obtenir tels que les échantillons de sang. Dans ce travail, nous avons étudié l'intérêt des mutations des gènes /TP53/ et /CTNNB1/ comme biomarqueurs pour la détection précoce et l'identification de l'étiologie des CHC. D'une part, nous avons analysé une mutation spécifique au codon 249 du gène /TP53/ (Ser249). Nous avons vu que les variations temporelles de la concentration en mutation Ser249 dans l'ADN circulant sont un marqueur d'exposition à l'aflatoxine B1 et au virus de l'hépatite B, et qu'elles pourraient être prédictives de l'hépatocancérogenèse. D'autre part, nous avons observé que les mutations dans les gènes /TP53/ et /CTNNB1/ peuvent co-exister dans les CHC, révélant des mécanismes complexes intégrant les deux voies, en fonction de l'étiologie. La compréhension de ces mécanismes permettra de déterminer la valeur des mutations comme marqueurs moléculaires du CHC.

A suscetibilidade ao câncer se apresenta com diferentes freqüências em diferentes populações. Dentre muitas das estudadas está a população judaica Ashkenazi, que vêm sendo alvo de muitos trabalhos por apresentarem doenças genéticas em proporção maior do que seria esperado para outra população qualquer. Tal incidência provavelmente advém do fato de terem sofrido dois grandes bottlenecks ao longo de sua história, gerando um efeito fundador que seria responsável pela alta incidência de doenças genéticas. O gene TP53 tem papel importante em um grande número de processos celulares e o polimorfismo Arg72Pro (R72P) deste gene leva a diferenças funcionais em atividades biológicas e bioquímicas, o que parece estar intimamente ligado ao câncer de mama. Da mesma forma, acredita-se que a variação genética de genes para metilenotetrahidrofolato redutase (MTHFR), enzima essencial no metabolismo um-carbono, pode alterar os níveis de metilação do DNA e influenciar a carcinogênese. Buscou-se então verificar qual a prevalência do polimorfismo R72P e dos polimorfismos de MTHFR (A1298C e C677T) em mulheres judias Ashkenazi de Porto Alegre. Para isto, foi utilizado material biológico proveniente de 255 mulheres Ashkenazi residentes na cidade de Porto Alegre e 255 amostras de um grupo controle de doadores saudáveis do hospital de clínicas de Porto Alegre, para amplificação das regiões de interesse através da técnica de PCR seguida por digestão com enzimas de restrição específicas. O polimorfismo R72P mostrou uma freqüência genotípica de ~61% Arg/Arg, ~37% Arg/Pro e ~2% Pro/Pro nas mulheres judaicas Ashkenazi; em comparação com a amostra controle que mostrou uma freqüência genotípica de ~43% Arg/Arg, ~44% Arg/Pro e 13% Pro/Pro. Com relação aos polimorfismos de MTHFR, obteve-se os seguintes resultados para judias e controles, respectivamente: 677CC (31 e 42%), 677CT (47 e 48%), 677TT (22 e 10%), 1298AA (49,4 e 60%), 1298AC (43,1 e 35%) e 1298CC (7,5 e 5%). Os resultados estatísticos mostraram-se significativos para as freqüências alélicas e genotípicas (P<0,001 para R72P; P=0,000 para C677T e P=0,041 para A1298C). Ampliar e diversificar as amostras se faz necessário para avaliar consistentemente como a influência das diferenças étnicas e raciais podem afetar os resultados dos estudos, além de aspectos como alimentação, fumo, hábito de beber, casamentos consangüíneos, entre outros, devem ser considerados nas análises de dados, buscando uma melhor resposta em relação às hipóteses levantadas e assim eliminando da análise possíveis fatores de confusão. / Cancer susceptibility is presented with different frequencies in different populations. Among the many populations studied, the Ashkenazi Jewish have been the subject of several scientific publications due to the greater proportion of genetic diseases observed than would be expected for any other population. This effect probably stands from the fact that they had suffered two major bottlenecks throughout its history, resulting in a founder effect that would be responsible for high incidence of genetic diseases. TP53 gene has an important role in many cellular processes and the Arg72Pro (R72P) polymorphism of this gene leads to functional differences in biochemical and biological activities, which seems to be closely linked to breast cancer. It is also believed that the genetic variation of genes for methylenetetrahydrofolate reductase (MTHFR), an essential enzyme of the one-carbon metabolism, can alter levels of DNA methylation and influence carcinogenesis. We sought to determine how prevalent are R72P and MTHFR (C677T; A1298C) polymorphisms in a group of Ashkenazi Jewish women from Porto Alegre. For this, we used biological material from 255 Ashkenazi women living in Porto Alegre and 255 samples from a control group of healthy donors of Hospital de Clinicas de Porto Alegre, for amplification of interest regions by PCR followed by digestion with specific restriction enzymes. The R72P polymorphism showed a genotype frequency of ~ 61% Arg / Arg, ~ 37% Arg / Pro and ~ 2% Pro / Pro in the Ashkenazi Jewish, compared to the control sample which showed a genotype frequency of ~ 43% Arg /Arg, Arg ~ 44% / 13% Pro and Pro / Pro. Regarding the MTHFR polymorphisms we obtained the following results for Jewish and controls, respectively: 677CC (31 and 42%), 677CT (47 and 48%), 677TT (22 and 10%), 1298AA (49.4 and 60%), 1298AC (43.1 and 35%) and 1298CC (7.5 and 5%). The statistical results were significant for allele and genotype frequencies (P <0.001 for R72P, P = 0.000 for C677T and A1298C to P = 0.041). Increasing the sample number and studying several worldwide populations is needed to consistently evaluate the influence of ethnic and racial differences which may affect the results obtained. In addition to that, aspects such as diet, smoking, drinking, consanguineous marriages, among others, should be considered in the data analysis in order to seek for a better response to the hypotheses raised, thus eliminating possible confounding factors.

A suscetibilidade ao câncer se apresenta com diferentes freqüências em diferentes populações. Dentre muitas das estudadas está a população judaica Ashkenazi, que vêm sendo alvo de muitos trabalhos por apresentarem doenças genéticas em proporção maior do que seria esperado para outra população qualquer. Tal incidência provavelmente advém do fato de terem sofrido dois grandes bottlenecks ao longo de sua história, gerando um efeito fundador que seria responsável pela alta incidência de doenças genéticas. O gene TP53 tem papel importante em um grande número de processos celulares e o polimorfismo Arg72Pro (R72P) deste gene leva a diferenças funcionais em atividades biológicas e bioquímicas, o que parece estar intimamente ligado ao câncer de mama. Da mesma forma, acredita-se que a variação genética de genes para metilenotetrahidrofolato redutase (MTHFR), enzima essencial no metabolismo um-carbono, pode alterar os níveis de metilação do DNA e influenciar a carcinogênese. Buscou-se então verificar qual a prevalência do polimorfismo R72P e dos polimorfismos de MTHFR (A1298C e C677T) em mulheres judias Ashkenazi de Porto Alegre. Para isto, foi utilizado material biológico proveniente de 255 mulheres Ashkenazi residentes na cidade de Porto Alegre e 255 amostras de um grupo controle de doadores saudáveis do hospital de clínicas de Porto Alegre, para amplificação das regiões de interesse através da técnica de PCR seguida por digestão com enzimas de restrição específicas. O polimorfismo R72P mostrou uma freqüência genotípica de ~61% Arg/Arg, ~37% Arg/Pro e ~2% Pro/Pro nas mulheres judaicas Ashkenazi; em comparação com a amostra controle que mostrou uma freqüência genotípica de ~43% Arg/Arg, ~44% Arg/Pro e 13% Pro/Pro. Com relação aos polimorfismos de MTHFR, obteve-se os seguintes resultados para judias e controles, respectivamente: 677CC (31 e 42%), 677CT (47 e 48%), 677TT (22 e 10%), 1298AA (49,4 e 60%), 1298AC (43,1 e 35%) e 1298CC (7,5 e 5%). Os resultados estatísticos mostraram-se significativos para as freqüências alélicas e genotípicas (P<0,001 para R72P; P=0,000 para C677T e P=0,041 para A1298C). Ampliar e diversificar as amostras se faz necessário para avaliar consistentemente como a influência das diferenças étnicas e raciais podem afetar os resultados dos estudos, além de aspectos como alimentação, fumo, hábito de beber, casamentos consangüíneos, entre outros, devem ser considerados nas análises de dados, buscando uma melhor resposta em relação às hipóteses levantadas e assim eliminando da análise possíveis fatores de confusão. / Cancer susceptibility is presented with different frequencies in different populations. Among the many populations studied, the Ashkenazi Jewish have been the subject of several scientific publications due to the greater proportion of genetic diseases observed than would be expected for any other population. This effect probably stands from the fact that they had suffered two major bottlenecks throughout its history, resulting in a founder effect that would be responsible for high incidence of genetic diseases. TP53 gene has an important role in many cellular processes and the Arg72Pro (R72P) polymorphism of this gene leads to functional differences in biochemical and biological activities, which seems to be closely linked to breast cancer. It is also believed that the genetic variation of genes for methylenetetrahydrofolate reductase (MTHFR), an essential enzyme of the one-carbon metabolism, can alter levels of DNA methylation and influence carcinogenesis. We sought to determine how prevalent are R72P and MTHFR (C677T; A1298C) polymorphisms in a group of Ashkenazi Jewish women from Porto Alegre. For this, we used biological material from 255 Ashkenazi women living in Porto Alegre and 255 samples from a control group of healthy donors of Hospital de Clinicas de Porto Alegre, for amplification of interest regions by PCR followed by digestion with specific restriction enzymes. The R72P polymorphism showed a genotype frequency of ~ 61% Arg / Arg, ~ 37% Arg / Pro and ~ 2% Pro / Pro in the Ashkenazi Jewish, compared to the control sample which showed a genotype frequency of ~ 43% Arg /Arg, Arg ~ 44% / 13% Pro and Pro / Pro. Regarding the MTHFR polymorphisms we obtained the following results for Jewish and controls, respectively: 677CC (31 and 42%), 677CT (47 and 48%), 677TT (22 and 10%), 1298AA (49.4 and 60%), 1298AC (43.1 and 35%) and 1298CC (7.5 and 5%). The statistical results were significant for allele and genotype frequencies (P <0.001 for R72P, P = 0.000 for C677T and A1298C to P = 0.041). Increasing the sample number and studying several worldwide populations is needed to consistently evaluate the influence of ethnic and racial differences which may affect the results obtained. In addition to that, aspects such as diet, smoking, drinking, consanguineous marriages, among others, should be considered in the data analysis in order to seek for a better response to the hypotheses raised, thus eliminating possible confounding factors.

A suscetibilidade ao câncer se apresenta com diferentes freqüências em diferentes populações. Dentre muitas das estudadas está a população judaica Ashkenazi, que vêm sendo alvo de muitos trabalhos por apresentarem doenças genéticas em proporção maior do que seria esperado para outra população qualquer. Tal incidência provavelmente advém do fato de terem sofrido dois grandes bottlenecks ao longo de sua história, gerando um efeito fundador que seria responsável pela alta incidência de doenças genéticas. O gene TP53 tem papel importante em um grande número de processos celulares e o polimorfismo Arg72Pro (R72P) deste gene leva a diferenças funcionais em atividades biológicas e bioquímicas, o que parece estar intimamente ligado ao câncer de mama. Da mesma forma, acredita-se que a variação genética de genes para metilenotetrahidrofolato redutase (MTHFR), enzima essencial no metabolismo um-carbono, pode alterar os níveis de metilação do DNA e influenciar a carcinogênese. Buscou-se então verificar qual a prevalência do polimorfismo R72P e dos polimorfismos de MTHFR (A1298C e C677T) em mulheres judias Ashkenazi de Porto Alegre. Para isto, foi utilizado material biológico proveniente de 255 mulheres Ashkenazi residentes na cidade de Porto Alegre e 255 amostras de um grupo controle de doadores saudáveis do hospital de clínicas de Porto Alegre, para amplificação das regiões de interesse através da técnica de PCR seguida por digestão com enzimas de restrição específicas. O polimorfismo R72P mostrou uma freqüência genotípica de ~61% Arg/Arg, ~37% Arg/Pro e ~2% Pro/Pro nas mulheres judaicas Ashkenazi; em comparação com a amostra controle que mostrou uma freqüência genotípica de ~43% Arg/Arg, ~44% Arg/Pro e 13% Pro/Pro. Com relação aos polimorfismos de MTHFR, obteve-se os seguintes resultados para judias e controles, respectivamente: 677CC (31 e 42%), 677CT (47 e 48%), 677TT (22 e 10%), 1298AA (49,4 e 60%), 1298AC (43,1 e 35%) e 1298CC (7,5 e 5%). Os resultados estatísticos mostraram-se significativos para as freqüências alélicas e genotípicas (P<0,001 para R72P; P=0,000 para C677T e P=0,041 para A1298C). Ampliar e diversificar as amostras se faz necessário para avaliar consistentemente como a influência das diferenças étnicas e raciais podem afetar os resultados dos estudos, além de aspectos como alimentação, fumo, hábito de beber, casamentos consangüíneos, entre outros, devem ser considerados nas análises de dados, buscando uma melhor resposta em relação às hipóteses levantadas e assim eliminando da análise possíveis fatores de confusão. / Cancer susceptibility is presented with different frequencies in different populations. Among the many populations studied, the Ashkenazi Jewish have been the subject of several scientific publications due to the greater proportion of genetic diseases observed than would be expected for any other population. This effect probably stands from the fact that they had suffered two major bottlenecks throughout its history, resulting in a founder effect that would be responsible for high incidence of genetic diseases. TP53 gene has an important role in many cellular processes and the Arg72Pro (R72P) polymorphism of this gene leads to functional differences in biochemical and biological activities, which seems to be closely linked to breast cancer. It is also believed that the genetic variation of genes for methylenetetrahydrofolate reductase (MTHFR), an essential enzyme of the one-carbon metabolism, can alter levels of DNA methylation and influence carcinogenesis. We sought to determine how prevalent are R72P and MTHFR (C677T; A1298C) polymorphisms in a group of Ashkenazi Jewish women from Porto Alegre. For this, we used biological material from 255 Ashkenazi women living in Porto Alegre and 255 samples from a control group of healthy donors of Hospital de Clinicas de Porto Alegre, for amplification of interest regions by PCR followed by digestion with specific restriction enzymes. The R72P polymorphism showed a genotype frequency of ~ 61% Arg / Arg, ~ 37% Arg / Pro and ~ 2% Pro / Pro in the Ashkenazi Jewish, compared to the control sample which showed a genotype frequency of ~ 43% Arg /Arg, Arg ~ 44% / 13% Pro and Pro / Pro. Regarding the MTHFR polymorphisms we obtained the following results for Jewish and controls, respectively: 677CC (31 and 42%), 677CT (47 and 48%), 677TT (22 and 10%), 1298AA (49.4 and 60%), 1298AC (43.1 and 35%) and 1298CC (7.5 and 5%). The statistical results were significant for allele and genotype frequencies (P <0.001 for R72P, P = 0.000 for C677T and A1298C to P = 0.041). Increasing the sample number and studying several worldwide populations is needed to consistently evaluate the influence of ethnic and racial differences which may affect the results obtained. In addition to that, aspects such as diet, smoking, drinking, consanguineous marriages, among others, should be considered in the data analysis in order to seek for a better response to the hypotheses raised, thus eliminating possible confounding factors.

Abstract In Western countries, breast and ovarian cancer are among the most frequent malignancies affecting women. Approximately 5–10% of the cases in the general population have been suggested to be attributed to inherited disease susceptibility. BRCA1 and BRCA2 are the main genes associated with predisposition to breast and ovarian cancer. Mutations in these two genes explain a major part of the families displaying a large number of early-onset breast and/or ovarian cancers, but at least one third of the cases appear to be influenced by other, as yet unidentified genes. Therefore, it is likely that defects in other cancer predisposing genes, perhaps associated with lower disease penetrance and action in a polygenic context, will also be discovered. In the present study, the contribution of germline mutations in putative breast and/or ovarian cancer susceptibility genes, based on their biological function, has been investigated in Finnish breast cancer families. The role of large genomic deletions or other rearrangements in the BRCA1 and BRCA2 genes was evaluated by Southern blot analysis, and mutation analysis of TP53, RAD51, the BRC repeats of BRCA2, and 53BP1 was performed by conformation sensitive gel electrophoresis and DNA sequencing. Germline TP53 mutations were searched for in 108 Finnish breast cancer families without BRCA1 or BRCA2 alterations. In this study, the pathogenic TP53 germline mutation, Arg248Gln, was identified in only one family. This family showed a strong family history of breast cancer and other cancers also fulfilling the criteria for Li-Fraumeni-like syndrome. Germline TP53 mutations are expected to be found in cancer families with clinical features seen in Li-Fraumeni or Li-Fraumeni-like syndromes. In this study, large deletions in BRCA1 and BRCA2 were not observed in 82 breast and/or ovarian cancer families. Likewise, no disease-related aberrations were detected in RAD51, the BRC repeats of BRCA2 or 53BP1 in the 126 breast and/or ovarian cancer families studied. The obtained results were validated by comparing to the occurrence in 288–300 female cancer-free control individuals. These results do not support the hypothesis that alterations in these particular genomic regions play a significant role in breast cancer predisposition in Finland. Thus, there are still genes to be discovered to explain the molecular background of breast cancer.

Introduction: Pathogenic mutations in the TP53-gene is present in about 50% of all somatic cancers. The TP53 gene’s function is to stop cancer cells from dividing, thus protect us from cancer. When this gene is not functioning properly, carriers face 70-100% risk of developing cancer in their lifetime. Early diagnosis of cancer improves survival and currently individuals with pathogenic hereditary mutations in this gene are entitled to an extensive surveillance program to increase early detection of cancer. A new study, the Swedish TP53 study (SWEP53), is investigating a surveillance program offering whole-body magnetic resonance imaging (WBMRI) of confirmed carriers. It is not known if the potential health effects of such surveillance programs justify the additional costs. The objective of this thesis was to determine whether any of the surveillance programs are cost-effective in Sweden. Methods: A novel decision analytic model was developed using a health care perspective covering the lifetime of carriers of mutations in TP53. Nine different cancers were modelled. All cancers carry a cost. an impact on health-related quality of life and survival. Three separate scenarios were investigated; no surveillance, surveillance by current standard of care and surveillance using WBMRI as proposed in the SWEP53-study. The total costs and total quality adjusted life years (QALY) of each scenario were used to calculate incremental cost-effectiveness ratios for the current standard of care and the SWEP53-protocol. Results: Surveillance of both male and female carriers of pathogenic mutations in TP53 carries an incremental cost-effectiveness ratio of 748 194 SEK. Surveillance using is WBMRI carries a cost of more than seven million SEK. If the annual probability of diagnosis is ca 40-50 percentage points higher than in the standard of care this may change to a level similar to SOC in the current analysis. The greatest uncertainty of the results lay in the estimation of the impact on survival from cancer diagnosis and annual probability of diagnosis. Conclusion: The incremental cost per QALY of the current surveillance program is likely acceptable in Sweden given the rarity and severity of being a carrier of a hereditary pathogenic mutation in TP53. Surveillance using WBMRI carries an incremental cost per QALY that is much higher than what is traditionally acceptable in Sweden. The clinical benefit of surveillance using WBMRI in relation to current surveillance is unclear and more data is needed. This analysis is made under great uncertainty but shows that when analyzing hereditary mutations, it is imperative to consider the whole spectrum of attributed disease as this greatly impacts the cost-effectiveness of e.g. surveillance. These estimates may be uncertain but as of today this is the only and the best estimate available.

Malondialdehyde (MDA) is a mutagenic and carcinogenic product of lipid peroxidation which has also been found at elevated levels in smokers. MDA reacts with nucleic acid bases to form pyrimidopurinone DNA adducts, of which 3-(2-deoxy-β-D-erythro-pentofuranosyl)pyrimidol[1,2-α]purin-10(3H)-one (M1dG) is the most abundant and has been linked to smoking. Mutations in the TP53 tumour suppressor gene are associated with half of all cancers. This research applied a multidisciplinary approach to investigate the toxic effects of MDA on the human lung fibroblasts MRC5, which have an intact p53 response, and their SV40 transformed counterpart, MRC5 SV2, which have a sequestered p53 response. Both cell lines were treated with MDA (0-1000 µM) for 24 and 48 h and subjected to a variety of analyses to examine cell proliferation, cell viability, cellular and nuclear morphology, apoptosis, p53 protein expression, DNA topography and M1dG adduct detection. For the first time, mutation sequencing of the 5’ untranslated region (UTR) of the TP53 gene in response to MDA treatment was carried out. The main findings were that both cell lines showed reduced proliferation and viability with increasing concentrations of MDA, the cell surface and nuclear morphology were altered, and levels of apoptosis and p53 protein expression appeared to increase. A LC MS-MS method for detection of M1dG adducts was developed and adducts were detected in CT-DNA treated with MDA in a dose-dependent manner. DNA appeared to become more fragmented with increasing MDA concentration, and the number of mutations in the 5’ UTR region of the TP53 gene also increased. The majority of mutations observed were insertions, compared to lung cancer mutation data where the majority were G to T transversions. This was unexpected, suggesting that tobacco smoke compounds have a different role in mutagenesis than endogenous lipid peroxidation. Thus, MDA has been found to have a clear effect on human lung fibroblasts at both the cellular and DNA level.

Identification of recurrent mutations through next-generation sequencing (NGS) has given us a deeper understanding of the molecular mechanisms involved in chronic lymphocytic leukemia (CLL) development and progression and provided novel means for risk assessment in this clinically heterogeneous disease. In paper I, we screened a population-based cohort of CLL patients (n=364) for TP53, NOTCH1, SF3B1, BIRC3 and MYD88 mutations using Sanger sequencing, and confirmed the negative prognostic impact of TP53, SF3B1 or NOTCH1 aberrations, though at lower frequencies compared to previous studies. In paper II, we assessed the feasibility of targeted NGS using a gene panel including 9 CLL-related genes in a large patient cohort (n=188). We could validate 93% (144/155) of mutations with Sanger sequencing; the remaining were at the detection limit of the latter technique, and technical replication showed a high concordance (77/82 mutations, 94%). In paper III, we performed a longitudinal study of CLL patients (n=41) relapsing after fludarabine, cyclophosphamide and rituximab (FCR) therapy using whole-exome sequencing. In addition to known poor-prognostic mutations (NOTCH1, TP53, ATM, SF3B1, BIRC3, and NFKBIE), we detected mutations in a ribosomal gene, RPS15, in almost 20% of cases (8/41). In extended patient series, RPS15-mutant cases had a poor survival similar to patients with NOTCH1, SF3B1, or 11q aberrations. In vitro studies revealed that RPS15mut cases displayed reduced p53 stabilization compared to cases wildtype for RPS15. In paper IV, we performed RNA-sequencing in CLL patients (n=50) assigned to 3 clinically and biologically distinct subsets carrying stereotyped B-cell receptors (i.e. subsets #1, #2 and #4) and revealed unique gene expression profiles for each subset. Analysis of SF3B1-mutated versus wildtype subset #2 patients revealed a large number of splice variants (n=187) in genes involved in chromatin remodeling and ribosome biogenesis. Taken together, this thesis confirms the prognostic impact of recurrent mutations and provides data supporting implementation of targeted NGS in clinical routine practice. Moreover, we provide evidence for the involvement of novel players, such as RPS15, in disease progression and present transcriptome data highlighting the potential of global approaches for the identification of molecular mechanisms contributing to CLL development within prognostically relevant subgroups.

On note un taux élevé de résistance aux traitements dans la leucémie myéloïde aiguë (LMA). Cette résistance peut être associée aux altérations de TP53. Les « ubiquitin specific peptidases » (USP) sont impliquées dans plusieurs cancers mais leurs rôles ne sont pas élucidés dans les LMA. L’analyse de l’expression génique par RT-PCR quantitative de 21 USP et des gènes de l’axe USP7-MDM2-TP53-CDKN1A dans 111 échantillons de LMA a montré une dérégulation de USP44, USP1, USP28 et CDKN1A dans respectivement 72%, 44%, 25% et 42% des cas. CDKN1A, une cible importante de TP53, pourrait avoir un rôle dans la résistance au traitement. Nous avons développé un modèle expérimental pour évaluer la réponse des cellules leucémiques à la doxorubicine et au nutlin 3, un modulateur non génotoxique de TP53, selon l’expression initiale de CDKN1A. Ce travail préliminaire suggère que certains membres de la famille des USP et CDKN1A pourraient représenter de nouvelles cibles thérapeutiques dans les LMA. / There is a high rate of drug resistance in acute myeloid leukemia (AML) which may be associated with TP53 alterations. The « Ubiquitin specific peptidases » (USP) are involved in several cancers but their roles in AML are not elucidated. Gene expression analysis of 21 USP and genes of the USP7-MDM2-TP53-CDKN1A axis by quantitative RT-PCR in 111 AML samples, showed a deregulation of USP44, USP1, USP28 and CDKN1A in respectively 72%, 44%, 25% and 42% of cases. CDKN1A, an important TP53 target, may have a role in treatment resistance. We have developed an experimental model to assess the response of leukemic cells to doxorubicin and nutlin 3, a non genotoxic TP53 modulator, in relation to the CDKN1A expression level. This preliminary work suggests that some members of the USP family and CDKN1A could represent novel therapeutic targets in AML.