The Lower Permian Admiral Formation redbeds in north-central Texas are famous for their well-studied vertebrate fauna. Taphonomical and paleoecological aspects, however, are inadequately understood. The prerequisite for taphonomical interpretations is an analysis of the depositional environments. Low relief and low regional dip expose extensive paleoslopes in western Archer County. Three major depositional systems may be recognized: a fine-grained meanderbelt, a low sinuosity fine-grained fluvial system, and a tidal flat. The small scale of the sedimentation (average sandstone thickness 1. 5 m) is remarkable. Four types of vertebrate occurrences can be distinguished: Type 1: Mass death bonebeds are situated in a floodbasin facies comprised of gray and red mudstones with abundant Psaronius roots (a swamp-dwelling tree fern) which is associated with the fluvial systems. Such basins were covered by a dense swamp forest with a high diversity of vertebrates. This type is exemplified by the Geraldine Bonebed, which has yielded at least 45 partly articulated skeletons representing 4 genera of tetrapods, and remains of another 8 vertebrate taxa. The bones were found on a layer of fern, seed fern, and conifer foliage and wood. This occurrence was formed by a single catastrophic event, possibly a forest fire, which drove the animals of the swamp forest into a pond, where they died of suffocation and were concentrated into a bonebed by physical processes (wind). Type 2: Lag bonebeds, situated on the landward margin of tidal flat environments, are represented by the Rattlesnake Canyon Bonebed which consists mainly of a calcareous concretion conglomerate, which contains fragmentary bone, serpulid worm colonies (brackish water!), and calamitelean wood. The diversity of forms represented by articulated material is low. The ubiquitous predator Dimetrodon and an amphibian, Trimerorachis, which tolerates brackish water, are common. This type was deposited as lag in a storm washover deposit. Type 3: Ponds (abandoned channels, etc.) which contained a fauna dominated by aquatic forms (the fishes Xenacanthus and Ectosteorachis, and the amphibian Archeria) were gradually filled by fine-grained sediment and organic debris (vertebrates, plants). These oxbow lakes were probably rimmed by stands of Calamites. Four examples are described. Type 4: Single, complete skeletons examplified here by Diadectes are occasionally found in red floodplain mudstones. / text

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Submitted by Marlene Santos (marlene.bc.ufg@gmail.com) on 2016-05-04T19:47:04Z No. of bitstreams: 2 Dissertação - Helen Rosa da Silva - 2015.pdf: 1580503 bytes, checksum: b52d04d79b983417cb07f98a43ae918d (MD5) license_rdf: 19874 bytes, checksum: 38cb62ef53e6f513db2fb7e337df6485 (MD5) / Approved for entry into archive by Luciana Ferreira (lucgeral@gmail.com) on 2016-05-05T13:09:29Z (GMT) No. of bitstreams: 2 Dissertação - Helen Rosa da Silva - 2015.pdf: 1580503 bytes, checksum: b52d04d79b983417cb07f98a43ae918d (MD5) license_rdf: 19874 bytes, checksum: 38cb62ef53e6f513db2fb7e337df6485 (MD5) / Made available in DSpace on 2016-05-05T13:09:30Z (GMT). No. of bitstreams: 2 Dissertação - Helen Rosa da Silva - 2015.pdf: 1580503 bytes, checksum: b52d04d79b983417cb07f98a43ae918d (MD5) license_rdf: 19874 bytes, checksum: 38cb62ef53e6f513db2fb7e337df6485 (MD5) Previous issue date: 2015-03-26 / Coordenação de Aperfeiçoamento de Pessoal de Nível Superior - CAPES / Understanding how species are distributed across space and what determines where they live is one of the oldest goals in Ecology. The concept of niche is very closely related to this goal. In fact, environmental variables are frequently used to predict the potential distribution of species. Niche amplitude is an important concept which helps us to understand which part of the available environmental space each species occupies, and how much of their niches overlap. Here we used a measure of niche amplitude based on the minimum and maximum tolerances of terrestrial vertebrates (except reptiles) for each variable related to climate. We calculated a single measure of niche amplitude for each species by considering together all chosen environmental variables. We used this number to first investigate the presence of latitudinal gradient in niche amplitude across the study area, which comprised the whole terrestrial globe. There is a significant correlation between niche amplitude and latitude for Old World birds. Second we tried to identify some phylogenetic structure in niche amplitude for birds. For this goal, we calculated the pair-wise niche overlap, and then compared the degree of overlap with pair-wise phylogenetic distances. We found no relationship between niche overlap and phylogenetic distance. We conclude that the absence of phylogenetic signal in niche overlap is due to the high dispersion capability of birds in general. If species have a high geographic range, they consequently have high niche amplitude, and therefore high overlap rates. Finally, we found a clear tendency of positive local spatial autocorrelation in mean niche overlap, as neighbor cells tend to show similar rates of niche overlap between species. / Compreender os fatores que determinam a distribuição das espécies no espaço geográfico é uma das questões mais importantes em ecologia. O conceito de nicho é fortemente relacionado a essa questão. Não por acaso, variáveis ambientais são comumente usadas para inferir a distribuição potencial de espécies. Amplitude de nicho é uma medida importante que nos possibilita saber que proporção do espaço ambiental cada espécie ocupa. Assim, podemos também identificar que proporção do espaço ocupado por cada espécie, seu nicho, é sobreposta pelo nicho das espécies coexistentes. No presente trabalho utilizamos uma medida de amplitude de nicho específica baseada na soma das tolerâncias para cada variável climática utilizada. Utilizamos essa medida para investigar, primeiramente, a presença de estrutura espacial, especificamente gradiente latitudinal, na amplitude de nicho de vertebrados terrestres (exceto répteis), numa escala global. Apenas aves do Velho Mundo apresentaram amplitude de nicho negativamente associada à latitude. Posteriormente, investigamos a presença de estrutura filogenética na amplitude de nicho em Aves, baseados na hipótese de conservação de nicho. Para esse objetivo calculamos a sobreposição de nicho par-a-par e então correlacionamos essa medida com as distâncias filogenéticas. Não houve correlação entre proximidade filogenética e sobreposição de nicho. Tal resultado pode estar relacionado à grande capacidade de dispersão de aves. Se a área de ocupação geográfica é ampla, a amplitude das tolerâncias é em geral alta e consequentemente a sobreposição média entre diferentes espécies. Finalmente houve forte indício de autocorrelação espacial positiva na sobreposição média por célula entre células próximas, indicando que áreas próximas tendem a apresentar espécies com taxas semelhantes de sobreposição de nicho.

D.Phil. / The entire Olifants . River Catchment is subjected to increasing afforestation, agricultural, domestic, mining, industrial, irrigation and urbanisation activities. These activities have a profound effect on the water quality of the river and its tributaries. This is cause for concern for the water users in the upper catchment, and because the Kruger National Park, one of its downstream water users, is extremely dependent on water of a satisfactory quality to sustain its various ecosystems. It is therefore vitally important to determine to what extent activities in the Upper Catchment of the Olifants River (Mpumalanga), especially in the Witbank and Middelburg areas, influence the water quality of the river. Point sources of pollution in the upper reaches include mining and industrial activities as well as water care works located at various points along the river. These were addressed in a Water Research Commission Project (No. 608/1/97) titled "Lethal and sublethal effects of metals on the physiology of fish: An experimental approach with monitoring support". Although sixteen localities were chosen for the initial project, this study only focussed around the metal ecotoxicology at two localities (Steenkool Spruit and Witbank Dam) in the upper catchment and the effect of metals (copper and zinc) on fish blood physiology. In aquatic ecosystems water quality is an important variable and full assessment of water quality, of Steenkool Spruit (locality 3) and Witbank Dam (locality 7), included evaluation of the chemical, physical and biological characteristics at each of the localities. Water and sediment samples were collected seasonally during the study period, February 1994 to May 1995, and the chemical and physical water quality variables were measured. During the study period three metal bioaccumulation indicator species, Labeo umbratus, Clarias gariepinus and Labeo capensis, were captured from which tissue (gills, liver, muscle and skin) samples were collected. These samples as well as water and sediment samples, were analysed for aluminium, chromium, copper, iron, manganese, nickel, lead and zinc concentrations, using atomic absorption spectrophotometry. In the past routine monitoring of chemical and physical water quality characteristics left scientists and managers with a sizeable pool of data which is often difficult but not impossible to interpret. To standardise and summarise this collection of data an aquatic toxicity index (ATI), WATER2 was developed by Wepener et at (1992). The present study attempted to expand and refine WATER2, which has resulted in the establishment of a new ATI, RAUWater.

During the Silurian, the Swedish island Gotland was positioned close to the equator and covered by a shallow sea called the Baltic Basin. The sedimentary rocks (predominantly carbonates) comprising most of the island today were initially formed in this warm sea, and the relatively complete succession of rocks often contains fossil fragments and scales from early vertebrates, including heterostracans, anaspids, thelodonts, osteostracans, acanthodians, and a stem-osteichthyan. Fossils of early vertebrates become increasingly more common in younger Silurian rocks, but are mostly represented by fragmentary remains and rarer occurrences of articulated jawless vertebrates (agnathans). However, the record of articulated specimens and jawed vertebrates (gnathostomes) are more numerous in rocks of the following Devonian Period. Isolated peaks of agnathan diversity during the Silurian and disarticulated remains of gnathostomes from this period hint at a cryptic evolutionary history. A micropaleontological approach with broader sampling may provide a better understanding of early vertebrate distribution patterns and hopefully give some insights into this history. The objective of this study was to build upon previous sampling on Gotland and to use established frameworks for disarticulated remains with the aim of making comparisons with similar studies performed in the East Baltic. However, difficulties locating the collections from these previous works necessitated a different focus. Undescribed museum collections and newly sampled material enabled some taxonomical revisions and greatly improved the understanding of vertebrate distribution in the youngest part of the Gotland sequence. It also indicated that this interval may represent the early stages of the diversification of gnathostomes that become increasingly dominant toward the end of the Silurian. Furthermore, the description of samples from partly coeval sections in Poland enabled some preliminary comparisons outside of Gotland, and presented a striking example of restricted environmental occurrences for a thelodont taxon. This is encouraging for future sampling and investigations on Gotland. Together with the establishment of a facies-framework comparable to that developed in the East Baltic and correlations to other areas, this may prove fruitful for an increased understanding of early vertebrate distribution and evolution during the Silurian.

Este estudo objetivou estudar os carrapatos e a infecção por patógenos, e sua correlação com os vertebrados desta região entre 10/2007 e 09/2008 foram realizadas mensalmente doze visitas a uma área de floresta ombrófila densa da Amazônica na Estação Ecológica de Samuel. Foram coletados, 60 aves, 36 mamíferos, 14 répteis e 11 anfíbios. Em vida livre foram realizadas 80 coletas de carrapatos em um total de 39.600m em cerca de 2.640min (44h) e coletados 265 carrapatos adultos de quatro espécies, sendo elas: A. scalpturatum (81), A. latepunctatum (84), A. oblongogutattum (18), A. naponense (69) e 597 ninfas de Amblyomma sp. Dos 104 adultos (11,8% do total de carrapatos) foram testados para Anaplasmataceae, obtive-se 27 (25,9%) positivos e mais 36 adultos (total de 140) e 11 carrapatos foram positivos (1) A. scalpturatum, (4) A. latepunctatum, (3) A. naponense. É notável o impacto da hidrelétrica sobre a fauna de pequenos mamíferos. / This study was aimed to analyze the ticks and the pathogenic infections, and their correlation with the vertebrates of such a region from October 2007 to September 2008, 12 surveys were monthly carried out at the Samuel Ecological Station in an Amazonian dense ombrophilous forest. They were collected from 60 birds, 36 mammals, 14 reptiles, and 11 amphibians. Eighty(80) collections of free-living ticks were carried out within an area of about 39.000 meters, during 2.640 minutes (44 hours), and 265 adult ticks or four species were picked up as following: 81 A.scalpturatum, 84 A. latepunctatum, 18 A. oblongogutattum, 69 A. naponense , and 597 Amblyomma sp. nymphs. 104 the adults, which accounted for 11.8% of total of ticks collected, were tested for Anaplasmataceae, and 27 (25.9%) were positive. In the Rickettsia spp. sample, additionally to the above mentioned 104 ticks tested, 36 adult ticks (out of a total of 140) were positive. It is noteworthy the impact caused by the hydropower plant on the small mammal fauna.

Könsbestämning hos vertebrater är ett komplext område som har intresserat forskare under en lång tid, trots detta är det i dagens forskningsläge inte helt självklart vad det är som avgör kön. Syftet med denna litteraturstudie är att identifiera och sammanställa kunskap om avgörande könsbestämningsmekanismer utifrån det aktuella forskningsläget. I samband med detta kommer arbetet undersöka hur exempel från könsbestämningssystem hos vertebrater kan användas och tillämpas i biologiundervisning på gymnasiet. Arbetet kom fram till att det är flera gener och proteiner som deltar i könsbestämningen, samt att många av dessa konserverats genom evolutionen. Dock betyder inte detta att alla grupper har samma könsbestämningsmekanismer utan det fanns en stor variation mellan vertebratgrupper. Jämförelser av könsbestämningssystemen visade på nya evolutionära samband mellan genetisk och miljöbetingad könsbestämning. Avslutningsvis konstateras möjliga tillämpningar i biologiundervisningen på gymnasiet. Exempel från olika könsbestämningssystem hos vertebrater kan eventuellt användas för att ge elever nya naturvetenskapliga perspektiv på könsbestämning och utveckla biologilärarens arbete med sexualitet, samtycke och relationer. / Sex-determination in vertebrates is a complex area of research that has interested researchers for a long time, still to this day it is not entirely clear what determines sex. The purpose of this literature review is to identify and summarize knowledge about crucial sex-determining mechanisms based on the current state of research. Regarding this review it will investigate how examples from the sex determination system in vertebrates can be used and applied in biology education at high school. The work concludes that there are several genes and proteins that are a part of the sex-determination, and that many of these have been conserved during evolution. However, this does not mean that all the vertebrates have the same sex-determining systems; rather there is a large variance within the vertebrates. Comparison of the sex-determining systems revealed new evolutionary relationships between the genetical- and the environmental sex-determining system. Finally, possible applications in biology education in high school were discussed. Examples from different sex-determining systems in vertebrates could potentially be used to provide students a new scientific perspective of sex-determination and develop the teacher’s work with sexuality, consent and relationships.

Two taxa of amphibians, five taxa of reptiles, and eighteen taxa of mammals were collected by screen-washing sediments from the upper Bidahochi Formation at White Cone peak, northeastern Arizona. Five new species of mammals were recovered. They include Perognathoides bidahochiensis (Heteromyidae), Bensonomys yazhi (Cricetidae), Bensonomys bradyi (Cricetidae), Paronychomys alticuspis (Cricetidae), and Martes (Plionictis) repenningi (Mustelidae). Bensonomys yazhi and Bensonomys bradyi are close to the stem of Central and South Americal hesperomyine radiation. The radiation began in the southwest United States and Mexico during the Hemphillian. The middle member of the Bidahochi Formation is dated at 6.7 m. y. by a basalt from Roberts Mesa. The paleomagnetic data and the White Cone local fauna support this middle Hemphillian date.

The Sucker Creek Formation exposures at Devils Gate in southeastern Oregon have yielded a significant small mammal fauna of at least thirty small mammal taxa from five stratigraphic horizons. The mammal-bearing portion of the Devils Gate section is more than 200 m thick. Fossil mammals occur in lacustrine and marginal lacustrine deposits lower in the section and occur in overbank and paleosol deposits higher in the section. ⁴⁰Ar/³⁹Ar single-crystal laser-fusion dates on three Devils Gate ashes shows that the age of the mammal-bearing sequence at Devils Gate spans the late early Barstovian land-mammal age with possible overlap into the late Barstovian, as currently defined. Duration of the entire mammal-bearing portion of the Devils Gate section was less than a million years. Both a new ash date from the type section and biostratigraphic correlations between Devils Gate and the type section support considerable temporal overlap between the two exposures. The Devils Gate Local Fauna includes several new taxa: a phyllostomatid bat; two "flying squirrels", Petauristodon sp. A and Petauristodon sp. B; and an eomyid rodent, Leptodontomys sp. A. Several fossil occurrences represent the first record of a taxon in the northern Great Basin and/or in the Barstovian land-mammal age, including: Blackia sp., Schaubeaumys grangeri, Protospermophilus quatalensis, and Pseudadjidaumo stirtoni. The Stagestop locality produced two new taxa, Copemys sp. aff C. esmeraldensis and Mystipterus sp. The Stagestop local fauna is Clarendonian in age. Concretions are an important source of fossil mammals in exposures of the Sucker Creek Formation. Geochemical analyses show that concretions formed through a complex interaction between bone and surrounding volcaniclastic material. Although some superficial bone was consumed during concretion diagenesis, concretion development reduced the chance of prolonged chemical and physical destruction of bone during later soil development. The broad ecological diversity of small mammals recovered from Devils Gate supports an interpretation of the local paleoecology as a mosaic of grassland, forest, and pond/lake-bank environments. Sequential small mammal faunas across a prominent ash event show a generally stable composition with no pronounced ecomorphic differences in pre- and post-volcanic disturbance intervals. Therefore, small mammals do not show analogous ecological patterns to disturbance-driven plant successions in the Sucker Creek Formation. I infer that the local ecosystem recovered from volcanic blasts at a temporal scale below the resolution of time-averaged, post-disturbance paleosols.

This thesis is a part of the project aimed at sequencing the genome and transcriptome of the bank vole (Clethrionomys glareolus). The role of natural selection in the evolution of mitochondrial DNA (mtDNA) has been subject to much discussion; while some studies did not provide evidence that selection affected the phylogeography of the studied species, other considered adaptive evolution important. The bank vole is the key model we use to study the adaptation to climate change. As with other species, the phylogeography of the bank vole has been based on the variation of a small part of mtDNA. The goal of the thesis was to sequence the entire mitochondrial genome for representatives of all main mtDNA lineages of the bank vole using the Sanger and Illumina technologies, and to assess the role of selection and adaptation in the evolution and phylogeography of this species. The adaptive evolution in mtDNA probably was not the main driving force during the postlacial colonization of Europe. However, signatures of adaptive evolution have been found - an amino acid change with possible functional consequences in one gene and an excess of radical changes in physical- chemical properties of amino acids in populations at the latitudinal (northern and southern) extremes of the bank vole distribution. Key...