4 Abstract Senescence is a specific cell state distinquished by cessation of cell division and proliferation and changes in gene expression. Normal cells enter senescence after distinct number of cell divisions or in case of an unrepairable damage. Senescence in cancer cells can be induced by subliminal stress as sublethal treatment with certain drugs. Senescent cancer cells persist in the tissue and may secrete a number of factors and nutrients affecting surrounding cells. Senescence can thus change the response of cancer cells to various apoptogens during cancer therapy. In this study, we focused on the elucidation of presumed differences between normal proliferating and senescent cancer cells in their response to selected apoptogens. Implementing bromodeoxyuridine (BrdU)-mediated replication stress in cancer cells derived from pancreatic (PANC-1) or mesothelioma (H28) tumors, we efficiently forced these cells to acquire senescent phenotype. We document that these senescent cells gain higher resistance to combined TRAIL and homoharringtonine (HHT) treatment and enhance sensitivity to other apoptogens such as FasL, camptothecin and mVES. These cells also showed increased expression of anti-apoptotic protein c-FLIP in senescent cells and changes in the expression of some Bcl-2 family proteins....

ADP Ribosylation Factor 1 (ARF1) is a universal small GTP binding protein which has an important role in vesicular trafficking between endoplasmic reticulum and Golgi. ARF1 is a basic component of Coat Protein I (COPI) vesicles which have functions in both formation of coatomer complex and recruitment of cargo proteins. In this study, the expression ARF1 was analyzed in pea (P. sativum L. cv. Araka) grown at different developmental stages. Because of the differential hormonal levels at corresponding stages, the effects of hormones on ARF1 expression were also studied. The results of present research show that ARF1 expression in embryos and 2 days grown plants after germination is lower when compared to 6 days grown plants. In order to see the hormonal effect, 3 weeks old plants were supplied with 50&micro / M of each hormone for 3 times on alternate days. Protein extraction, cell fractionation,Western blot was carried out and immunoblot analysis was conducted with AtARF1 polyclonal antibodies. It was shown that, in pea shoots, abscisic acid and gibberellin increases the inactive GDP bound ARF1 by hydrolyzing ARF-GTP through activating ARFGTPase activating protein (ARF-GAP) or partially inhibiting ARF-Guanine Nucleotide Exchange Factor (ARF-GEF). In roots, ARF-GDP (cytosolic fraction), ARF-GTP (microsomal fraction) and total amount of ARF1 (13.000 x g supernatant fraction) were down regulated by ~11, ~19 and ~11 fold respectively with the application of gibberellin / and by ~11, ~7 and ~3 fold respectively with the application of abscisic acid / when compared to control plants. These results indicate the importance of plant hormones in the regulation of ARF1 in pea.

The ADP-ribosylation factor (ARF) family of small G-proteins regulates membrane dynamics and intracellular membrane traffic. ARFs are activated upon GTP-binding catalyzed by guanine-nucleotide exchange factors (GEF), which works as a molecular switch and triggers association with specific target membranes. This work focused on the cloning, expression and characterization of genes from the milk yeast K. lactis and the fly D. melanogaster, which are putative homologs of the S. cerevisiae genes GEA1, GEA2, ARF1, ARF2, and ARF3.

L’irradiation (IR) est utilisée dans le traitement de plusieurs cancers et désordres hématologiques, en particulier dans les protocoles de conditionnement précédents les transplantations de moelle osseuse. L’emploi de doses réduites d’IR semble favoriser le succès de la prise de greffe. Cette observation soulève un point de plus en plus discuté dans la littérature, soit l’importance de l’intégrité du microenvironnement pour la transplantation et le bon fonctionnement de l’hématopoïèse. L’IR induit la sénescence des cellules stromales de la moelle osseuse in vitro. Ce mécanisme de défense cellulaire entraînant un arrêt de prolifération permanent est également observé in vivo dans différents systèmes, mais n’a pas encore été étudié dans le contexte de la niche hématopoïétique. Les travaux présentés dans cette thèse ont pour objectif de déterminer si l’IR induit la sénescence des cellules stromales de la moelle osseuse et si une telle induction altère les fonctions hématopoïétiques. Nos résultats ont permis de démontrer pour la première fois qu’une IR corporelle totale induit effectivement la sénescence des cellules stromales de la moelle osseuse. En outre, cette altération du microenvironnement affecte la lymphopoïèse B de façon Ink4a/Arf-dépendante (1er article). De plus, les modifications systémiques qui résultent de l’IR compromettent l’homéostasie osseuse en augmentant la résorption de l’os, sans toutefois diminuer la formation de celui-ci (2e article). Ces données nous permettent de mieux comprendre les effets de la sénescence des cellules stromales de la moelle osseuse sur les fonctions hématopoïétiques. Par ailleurs, elles suggèrent que l’emploi de drogues et/ou de procédés n’induisant pas la sénescence des cellules stromales de l’os offrirait un meilleur pronostic à long terme pour les patients. / Ionizing radiation (IR) is used in the treatment of several cancers and hematological disorders, especially in conditioning regimens for bone marrow transplantation. Reduced doses of IR seem to favor the success of engraftment. This observation supports the growing evidences suggesting the importance of the microenvironment integrity for the success of bone marrow transplantation and hematopoiesis maintenance. IR induces senescence of bone marrow stromal cells in vitro. This defense mechanism which leads to a permanent cell growth arrest is also observed in different organs in vivo but has not yet been studied in the hematopoietic niche. The objectives of this doctoral thesis are to determine whether IR induces senescence of bone marrow stromal cells and whether such induction alters hematopoietic functions. Our results have demonstrated for the first time that total body IR actually induces the senescence of bone marrow stromal cells. Furthermore, this alteration of the microenvironment affects B lymphopoiesis in an Ink4a/Arf-dependent manner (paper #1). In addition, the systemic changes associated with IR compromise bone homeostasis by increasing bone resorption without reducing bone formation (paper #2). All together, these data enhance our knowledge related to the effects of IR-induced senescent bone marrow stromal cells on hematopoietic function. Moreover, our results suggest that using drugs and/or procedures inducing no senescent bone marrow stromal cells would provide a better long-term prognosis for patients.

L’irradiation (IR) est utilisée dans le traitement de plusieurs cancers et désordres hématologiques, en particulier dans les protocoles de conditionnement précédents les transplantations de moelle osseuse. L’emploi de doses réduites d’IR semble favoriser le succès de la prise de greffe. Cette observation soulève un point de plus en plus discuté dans la littérature, soit l’importance de l’intégrité du microenvironnement pour la transplantation et le bon fonctionnement de l’hématopoïèse. L’IR induit la sénescence des cellules stromales de la moelle osseuse in vitro. Ce mécanisme de défense cellulaire entraînant un arrêt de prolifération permanent est également observé in vivo dans différents systèmes, mais n’a pas encore été étudié dans le contexte de la niche hématopoïétique. Les travaux présentés dans cette thèse ont pour objectif de déterminer si l’IR induit la sénescence des cellules stromales de la moelle osseuse et si une telle induction altère les fonctions hématopoïétiques. Nos résultats ont permis de démontrer pour la première fois qu’une IR corporelle totale induit effectivement la sénescence des cellules stromales de la moelle osseuse. En outre, cette altération du microenvironnement affecte la lymphopoïèse B de façon Ink4a/Arf-dépendante (1er article). De plus, les modifications systémiques qui résultent de l’IR compromettent l’homéostasie osseuse en augmentant la résorption de l’os, sans toutefois diminuer la formation de celui-ci (2e article). Ces données nous permettent de mieux comprendre les effets de la sénescence des cellules stromales de la moelle osseuse sur les fonctions hématopoïétiques. Par ailleurs, elles suggèrent que l’emploi de drogues et/ou de procédés n’induisant pas la sénescence des cellules stromales de l’os offrirait un meilleur pronostic à long terme pour les patients. / Ionizing radiation (IR) is used in the treatment of several cancers and hematological disorders, especially in conditioning regimens for bone marrow transplantation. Reduced doses of IR seem to favor the success of engraftment. This observation supports the growing evidences suggesting the importance of the microenvironment integrity for the success of bone marrow transplantation and hematopoiesis maintenance. IR induces senescence of bone marrow stromal cells in vitro. This defense mechanism which leads to a permanent cell growth arrest is also observed in different organs in vivo but has not yet been studied in the hematopoietic niche. The objectives of this doctoral thesis are to determine whether IR induces senescence of bone marrow stromal cells and whether such induction alters hematopoietic functions. Our results have demonstrated for the first time that total body IR actually induces the senescence of bone marrow stromal cells. Furthermore, this alteration of the microenvironment affects B lymphopoiesis in an Ink4a/Arf-dependent manner (paper #1). In addition, the systemic changes associated with IR compromise bone homeostasis by increasing bone resorption without reducing bone formation (paper #2). All together, these data enhance our knowledge related to the effects of IR-induced senescent bone marrow stromal cells on hematopoietic function. Moreover, our results suggest that using drugs and/or procedures inducing no senescent bone marrow stromal cells would provide a better long-term prognosis for patients.

La sénescence est un important mécanisme cellulaire qui prévient la tumorigenèse et se caractérise par un arrêt permanent du cycle cellulaire orchestré principalement par les inhibiteurs des cycline-kinases dépendantes (i.e p16INK4a). La sénescence est une caractéristique importante du vieillissement, mais un déséquilibre dans son induction peut être délétère pour la régénération tissulaire et paradoxalement pour la progression tumorale. L'irradiation (IR) est couramment utilisée comme approche thérapeutique dans le cancer. Chez les enfants survivants du cancer, l’exposition à l’irradiation et à la chimiothérapie entrainent le développement d’importants effets secondaires, lesquels sont associés à une forme de vieillissement prématuré. La formation de cellules sénescentes, en inhibant la prolifération tissulaire et en sécrétant des cytokines proinflammatoires, pourrait être en être responsable. Notre groupe a précédemment démontré que le gène p16INK4a est augmenté de manière tardive (environ 8 semaines) suite à une exposition à l’irradiation. Il n'a pas encore été étudié si cette expression retardée survient en réponse aux dommages causés par l'irradiation sur l’homéostasie tissulaire ou à titre de mécanismes de suppression tumorale. Un objectif de cette thèse visait donc à déterminer s’il était possible de moduler/inhiber l’expression de p16INK4a dans le but d’accroitre la régénération tissulaire sans nécessairement accroitre les risques d’incidence du cancer. En effet, ceci pourrait être possible dans la mesure ou la sénescence induite par p16INK4a est également irréversible in vivo. Nos résultats ont démontré que l’inhibition de l’expression de p16INKa (suite à l’administration de tamoxifen chez les souris p16L/LCre), induit à la fois une augmentation de la régénération tissulaire mais malheureusement également une augmentation de l’incidence du cancer. Nous voulions également connaitre l’impact de l’accumulation de ces cellules sénescentes sur les tissus, plus spécifiquement sur la fonction des cellules immunitaires de la rate. Nous avons démontré que des altérations (dépendantes de p16INK4a) au sein du microenvironnement splénique pouvaient altérer les fonctions intrinsèques des macrophages, des cellules dendritiques et des lymphocytes T. En outre, l'élimination systémique des cellules p16INK4a positives (modèle de sourie p16-3MR) a conduit à une restauration partielle de la fonction de ces cellules immunitaires. La combinaison de ces données nous permet de mieux comprendre le rôle et la fonction du gène p16INK4a dans le processus de sénescence induite par l’irradiation. Nos résultats suggèrent qu’il est envisageable d’utiliser des agents pharmacologiques tels que des composés sénolytiques, capables d’induire l’apoptose chez les cellules sénescentes spécifiquement, afin de potentiellement diminuer les effets du vieillissement prématuré induit par la sénescence cellulaire chez les survivants du cancer. / Senescence is an important cellular mechanism that prevents tumorigenesis and is characterized by a permanent cell cycle arrest orchestrated by cyclin-dependent kinases inhibitors (i.e p16INK4a). Senescence is an important hallmark of aging and unbalanced levels of senescence is considered deleterious for tissue regeneration, and paradoxically for tumor progression. Irradiation (IR) is commonly used therapeutic approach in cancer treatment. Together with surgery and chemotherapy, it has helped to increase the life expectancy of patients and, in some cases, leads to complete remission. However, long-after therapy, children who survive cancer encounter alterations in the integrity of tissues/organs associated with premature aging. The accumulation of senescent cells may be responsible for this accelerated aging by limiting tissue proliferation and secreting pro-inflammatory cytokines. Our group has previously demonstrated that the p16INK4a gene is increased in a delayed manner (approximately 8 weeks) following exposure to IR. It has not yet been investigated whether this delayed expression occurs in response to IR-induce damage of tissue homeostasis or as tumor suppression mechanisms. One objective of this thesis was to determine whether it was possible to modulate / inhibit the expression of p16INK4a in order to increase tissue regeneration without necessarily increasing the risk of cancer incidence. Indeed, this may be possible since p16INK4a-induced senescence is also irreversible in vivo. Our results demonstrated that the inhibition of p16INK4a expression in conditional-p16INK4a null mice , induces both an increase in tissue regeneration but unfortunately also an increase in the incidence of cancer. We also wanted to know the impact of the accumulation of these senescent cells on the tissues, more specifically on the function of the immune cells in the spleen. We have demonstrated that alterations (p16INK4a-dependent) within the splenic microenvironment can alter the intrinsic functions of macrophages, dendritic cells and T cells. In addition, the systemic elimination of p16INK4a positive cells (mouse model p16-3MR) has led to a partial restoration of the function of these immune cells. The combination of these data allows us to better understand the role and function of the p16INK4a gene in the irradiation-induced senescence process. Our results suggest that it is conceivable to use pharmacological agents such as senolytic compounds, capable of inducing apoptosis in senescent cells specifically, in order to potentially reduce the effects of premature aging induced by cellular senescence in cancer survivors.

後冷戰時期的亞太區域安全事務趨於複雜，區域性國際組織日漸興起，其中「東協區域論壇」（ASEAN Regional Forum, ARF）主要作為亞太國家協商區域安全合作的重要機制。本篇論文主要介紹「東協區域論壇」之成立背景、過程，以及其運作之具體成就，進而分析其在亞太區域安全中所具備之功能與扮演之角色。 「東協區域論壇」成立於一九九四年，目前共有二十二個成員國。後冷戰時期亞太區域多邊主義形成，加上區域安全架構面臨重組，使得多邊安全對話機制之形成有其必要。「東協區域論壇」成立之基本宗旨是促使亞太國家針對政治及國防安全議題，培養建設性對話之習慣。「東協區域論壇」在推動區域安全合作機制上，分三階段進行：第一階段為推動「信心建立措施」（Confidence Building Measures, CBMs）；第二階段為發展「預防外交」（Preventive Diplomacy）；第三階段則是發展區域衝突的解決機制。至一九九九年第六屆「東協區域論壇」年會為止，已在「信心建立」上達成可觀的成就，並於一九九七年開始朝第二階段「預防外交」推動。 亞太國家在「東協區域論壇」各項目標的推動下，逐漸對區域安全事務之合作建立共識，對於和緩國際緊張情勢，降低衝突昇高機率，具有正面而積極之意義。惟其組織結構鬆散，屬性為協商安全議題之區域性論壇，雖然「信心建立措施」與「預防外交」的推動實施有其顯著成果，要能夠達到具備解決區域衝突的機制，尚有許多仍待努力之處。 中華民國目前並非「東協區域論壇」之成員國，在中共排擠壓力下，無法參加此一多邊安全對話機制。不過，台灣在未來亞太區域安全政策的規劃上，可將「東協區域論壇」成員國所形成之安全共識，作為研究實施之參考。同時，加強「綜合性安全」（comprehensive security）以及「合作性安全」（cooperative security）目標之追求，尋求各種多邊安全合作之途徑，在亞太區域安全中扮演積極之角色。如此可避免我國安全利益受損，並可增加參與國際社會之機會。 第一章、 緒 論 第一節 研究動機與研究宗旨 第二節 研究方法與限制 第三節 研究範圍 第二章、東協區域論壇之成立與運作 第一節 東協區域論壇之成立背景與過程 第二節 東協區域論壇之宗旨與目標 第三節 東協區域論壇之基本架構 第四節 東協區域論壇之運作模式 第三章、東協區域論壇之成就 第一節 歷屆東協區域論壇年會(外長會議)主要議題 第二節 東協區域論壇推動區域安全合作之各項成就 第三節 東協區域論壇對南海問題之態度與處理方式 第四章、東協區域論壇與亞太強權之關係 第一節 東協區域論壇與美國之關係 第二節 東協區域論壇與中共之關係 第三節 東協區域論壇與日本之關係 第五章、結 論

東協成立的目的之一，就是要促進東協各會員國之間「在平等與夥伴的精神之下，採取共同努力，促進區域內各國的經濟成長、社會進步與文化發展，以增進東南亞國家成為繁榮與和平的基礎。」隨著冷戰結束，大國影響改變，中共與日本積極介入東南亞地區，加上1999年 4 月，隨著柬埔寨的加入東南亞十個國家全部成為東協成員，實現了東協最初建立的願望。但在相互平等、不干涉內政及和平解決衝突的基礎上，東協推動區域安全合作的機制（東協方式的協商模式）面臨極大挑戰與衝擊。 本論文共分七章，第一章緒論，揭示本文研究動機與目的、研究方法、研究範圍與限制及論文架構等。第二章探討東南亞安全環境，從東協的成立，在諸多歷史情結與仇恨糾結中，東協十國出現的背景原因，及探討冷戰前後影響東協安全合作機制形成的因素，從中瞭解「信心安全建立措施」在東協國家間的重要性。第三章 1967-1989東協「信心安全建立措施」的歷史脈絡，從「東協方式」談起，以新自由主義的概念嚐試瞭解不同於歐盟整合的「東協方式」。第四章1990年後東協內部「信心安全建立措施」的發展與特徵。針對冷戰後東協內部安全機制加以探討，如各國之間透過那些機制和平解決雙邊邊界問題等。第五章東協國家主導的由外而內安全合作模式，探討東協區域論壇及亞太安全合作理事會之成立背景、主要議題及對東協安全合作機制的影響。第六章今後東協推動內部「信心安全建立」的機會與挑戰。東協內部對「信心安全建立措施」的看法與態度亦影響執行成效，東協內部解決衝突的機制是否健全，由「信心建立措施」發展到「預防性外交機制」之可行性。第七章結論。藉著上述的探討，瞭解東協內部信心安全建立機制之演進及發展，為東南亞區域安全找到新的方向。

During embryogenesis and post-embryonic patterning, active transport of the phytohormone auxin, reflected in the expression of the Arabidopsis PIN family of auxin efflux mediators, generates local auxin distributions that are crucial for correct organ and tissue specification. Polar auxin transport routes have also long been postulated to regulate vein formation in the leaf. The molecular identification of PIN proteins has made it possible to investigate this hypothesis further by visualizing auxin transport routes in developing leaves. In Arabidopsis leaf primordia, PIN1 is expressed before the earliest known markers of vascular identity, in domains that are gradually restricted to sites of vein formation. PIN1 polarity indicates that auxin is directed towards distinct “convergence points” (CPs) in the marginal epidermis, from which it defines the sites of major vein formation. Within incipient veins, PIN1 polarity indicates drainage of auxin into preexisting veins, such that veins connected at both ends display two divergent polarities. Local auxin application triggers the formation of ectopic CPs and new veins, demonstrating the sufficiency of auxin as a vein-specifying signal. However, not all PIN1-labeled auxin transport routes differentiate as veins: Minor veins are initially unstable, suggesting local competition for auxin transport. Expression of ATHB8, a marker of vascular cell selection, correlates with enhanced PIN1 expression domain (PED) stability and vascular differentiation. Auxin application and auxin transport inhibition reveal that both CP formation in the epidermis and subepidermal PED dynamics are auxin-dependent and self-organizing. Furthermore, normal auxin perception through the ARF-Aux/IAA signaling pathway is required for the restriction of PIN1-mediated auxin transport to narrow subepidermal domains. ARF-Aux/IAA signaling is known to control auxin transport through the regulation of PIN1 dynamics, but the mechanism of this regulation is unclear. It is here shown that two redundantly acting AUXIN RESPONSE FACTOR (ARF) transcription factors, ARF5/MONOPTEROS (MP) and ARF7/NPH4, jointly regulate both PIN1 expression and localization during lateral root patterning in Arabidopsis, in part through the direct transcriptional activation of PIN1 by MP. Taken together, these results indicate that feedback between PIN-mediated auxin transport and ARF-Aux/IAA signaling regulates the patterning of root and shoot organs.

During embryogenesis and post-embryonic patterning, active transport of the phytohormone auxin, reflected in the expression of the Arabidopsis PIN family of auxin efflux mediators, generates local auxin distributions that are crucial for correct organ and tissue specification. Polar auxin transport routes have also long been postulated to regulate vein formation in the leaf. The molecular identification of PIN proteins has made it possible to investigate this hypothesis further by visualizing auxin transport routes in developing leaves. In Arabidopsis leaf primordia, PIN1 is expressed before the earliest known markers of vascular identity, in domains that are gradually restricted to sites of vein formation. PIN1 polarity indicates that auxin is directed towards distinct “convergence points” (CPs) in the marginal epidermis, from which it defines the sites of major vein formation. Within incipient veins, PIN1 polarity indicates drainage of auxin into preexisting veins, such that veins connected at both ends display two divergent polarities. Local auxin application triggers the formation of ectopic CPs and new veins, demonstrating the sufficiency of auxin as a vein-specifying signal. However, not all PIN1-labeled auxin transport routes differentiate as veins: Minor veins are initially unstable, suggesting local competition for auxin transport. Expression of ATHB8, a marker of vascular cell selection, correlates with enhanced PIN1 expression domain (PED) stability and vascular differentiation. Auxin application and auxin transport inhibition reveal that both CP formation in the epidermis and subepidermal PED dynamics are auxin-dependent and self-organizing. Furthermore, normal auxin perception through the ARF-Aux/IAA signaling pathway is required for the restriction of PIN1-mediated auxin transport to narrow subepidermal domains. ARF-Aux/IAA signaling is known to control auxin transport through the regulation of PIN1 dynamics, but the mechanism of this regulation is unclear. It is here shown that two redundantly acting AUXIN RESPONSE FACTOR (ARF) transcription factors, ARF5/MONOPTEROS (MP) and ARF7/NPH4, jointly regulate both PIN1 expression and localization during lateral root patterning in Arabidopsis, in part through the direct transcriptional activation of PIN1 by MP. Taken together, these results indicate that feedback between PIN-mediated auxin transport and ARF-Aux/IAA signaling regulates the patterning of root and shoot organs.