The body of work hereby presented aims at better defining the specific mechanisms underlying cognitive control and flexibility, and to investigate the neural substrates that might support these dynamics. More specifically, the anterior cingulate (ACC), dorsolateral prefrontal (dlPFC) and frontopolar (FPC) cortices have been proposed to play a fundamental role in monitoring and detecting the presence of environmental contingencies that require the recruitment of cognitive control (such as competition between responses in the presence of conflicting information), implementing cognitive control, and supporting higher-order cognitive processing, respectively. This thesis investigates the effects of damage to these regions, and of interference with their activity, on these processes. It also argues for the importance of dissociating possible separate cognitive control components that might differently contribute to behavioural adjustments (such as caution and attention/task-relevant processing), and provides one of the first attempts to quantify them within the parameters of a mathematical model of choice response-time, the Linear Ballistic Accumulator (LBA). The results confirm the crucial role of the dlPFC in modulating behavioural adjustments, as both damage and interference with this region’s activity significantly affect measures of conflict-induced behavioural adaptation. It is hypothesized that dlPFC might drive behavioural adjustments by encoding recent conflict history and/or supporting the automatization of a newly advantageous behavioural strategy during the early stages after a change in conflict levels. When a task does not involve competition between a habit and instructed behaviour, lesions or interference with ACC’s activity do not appear to affect behaviour in a manner that is consistent with the classic conflict-monitoring framework. It is suggested that its role might be better described as a more general monitoring and confirmatory mechanism that evaluates both actual and potential outcomes of an action, in order to proactively guide adjustments away from contextually disadvantageous responses. Finally, lesions to the FPC do not affect abstract-rule integration, but do impair the early stages of acquisition of a new abstract rule, when a previously rewarded rule stops being rewarded, and specifically when acquisition is dependent on self-initiated exploration. This suggests a role for FPC in the evaluation of multiple concurrent options in order to aid the development of new behavioural strategies.

Thèse numérisée par la Division de la gestion de documents et des archives de l'Université de Montréal.

La transmission cholinergique, et notamment muscarinique, joue un rôle déterminant dans le système nerveux central au niveau de la modulation de la plasticité neuronale. La libération d'ACh dans le cortex visuel est concomitante à la présentation de stimuli visuels. Par son action sur la transmission neuronale corticale, l'ACh module à long terme les réponses à de nouveaux stimuli sensoriels. Dans la présente étude, l'implication du système cholinergique au niveau du développement cortical et de la plasticité inductible chez l'adulte a été étudiée par les techniques d'imagerie optique des signaux intrinsèques et d'immunohistochimie chez le rongeur. Ces deux techniques de cartographie de l'activité corticale nous ont permis d'évaluer, d'une part, l'impact modulatoire de l'acétylcholine (ACh) et de ses récepteurs muscariniques (mAChRs, M1 à M5) sur l'organisation fonctionnelle du cortex visuel chez des souris déficitaires pour les mAChRs et, d'autre part, l'impact de la libération d'ACh lors d'un entraînement visuel, sur le nombre, la nature neurochimique et la localisation au niveau des couches corticales des neurones corticaux activés. L'implication du système cholinergique sur la cartographie du cortex visuel primaire a été étudiée sur les souris génétiquement modifiées délétères (knock out : KO) pour différentes combinaisons de sous-types de mAChRs. L'imagerie des signaux intrinsèques, basée sur les changements de réflectance corticale de la lumière survenant lors de la consommation d'oxygène par les neurones activés, a permis de déterminer, lors de stimulations visuelles, les différentes composantes des propriétés des neurones du cortex visuel. La taille des champs récepteurs des neurones est diminuée lors de l'absence du récepteur M1 ou de la combinaison M1/M3. Le champ visuel apparent est augmenté chez les souris M2/M4-KO mais diminué chez les M1-KO. La finesse des connectivités neuronales (évaluée par la mesure du scatter du signal) est réduite lors de l'absence des récepteurs M2/M4. Finalement, chez les animaux M1/M3-KO, une diminution de l'acuité visuelle est observée. L'effet à long-terme d'un entraînement visuel couplé à une stimulation des neurones cholinergiques sur la distribution et la nature des neurones immunoréactifs au c-Fos, c'est-à-dire les neurones activés, a été évalué. Puisque cette stimulation combinée est en mesure de produire des modifications comportementales, notamment au niveau de l'acuité visuelle, il devenait intéressant de s'attarder aux modifications neuroanatomiques et de déterminer quels éléments de l'équilibre excitateur/inhibiteur sont compromis chez ces animaux. Les résultats obtenus démontrent que les animaux ayant reçu une combinaison de l'entraînement cholinergique et visuel présentent une augmentation du marquage c-Fos comparativement aux animaux n'ayant reçu que la stimulation cholinergique. D'autre part, chez ces animaux, il est possible d'observer des modifications de l'équilibre excitateur/inhibiteur qui correspond au potentiel plastique de la région. En conclusion, ces études démontrent un rôle important du système cholinergique dans le développement, la maturation et la plasticité du système visuel cérébral. / The cholinergic transmission, including the muscarinic receptors, plays a role in the central nervous system modulating neuronal plasticity. ACh is released in the visual cortex during the presentation of visual stimuli. By its action on cortical neuronal transmission, ACh modulates long-term responses to new sensory stimuli. In the present study, the involvement of the cholinergic system in cortical development and inductible plasticity in adults was investigated by optical imaging of intrinsic signals and immunohistochemistry in rodents. These two mapping techniques of cortical activity allowed us to evaluate 1) the modulatory effect of acetylcholine (ACh) and its muscarinic receptors (mAChRs, M1 to M5) on the functional organization of the visual cortex in mice deficient of mAChRs and 2) the impact of ACh release during a visual training on the number, neurochemical nature and location of activated neurons in the cortical layers. The involvement of the cholinergic system on the mapping of the primary visual cortex was studied in mice knockout (KO) for different combinations of mAChRs subtypes. Intrinsic signals imaging, based on fluctuations in cortical light reflectance during oxygen consumption by activated neurons, was used to assess the various properties of neurons in the visual cortex during visual stimulation. The size of the neuronal receptive fields is reduced in the absence of M1 receptor or the combination M1/M3. The apparent visual field is increased in M2/M4-KO mice but decreased in M1-KO. The sharpness of neuronal connectivity (assessed by the measure of the scatter) is reduced in the absence of M2/M4 receptors. Finally, in M1/M3-KO animals, a decrease in visual acuity was observed. The effect of long-term visual training coupled with the stimulation of cholinergic neurons on the distribution and nature of immunoreactive neurons in c-Fos, the activated neurons, was evaluated. Since this combined stimulation is able to produce behavioral changes, especially in terms of visual acuity, it was interesting to focus on neuroanatomical modifications and determine which elements of the excitatory / inhibitory balance were compromised in these animals. The results showed that animals which received a combination of visual and cholinergic training presented an increase in c-Fos labeling compared to animals that received only the cholinergic stimulation. Moreover, in these animals, it is possible to observe changes in the excitatory / inhibitory balance which corresponds to the potential of plasticity in the region. In conclusion, these studies demonstrate an important role of the cholinergic system in the development, maturation and plasticity of the cerebral visual system.

The purpose of this study was to compare three direct digital sensors (Kodak 6100, Schick CDR, and Dexis PerfectSize), a phosphor plate system (OpTime), and F-speed film to standard D-speed film in the detection of artificial bone lesions prepared in mandible bone sections. Multiple artificial bone lesions were prepared at varying depths in the cortical bone. Specimens were imaged with six different radiographic systems. Radiographs were randomly presented to nine different observers. A logistic regression analysis indicated that the ability of the different radiographic systems to detect the bone lesions was significantly different at the mean percentage of cortical bone remaining. The Kodak filtered, Schick filtered, OpTime unfiltered, Schick unfiltered, and Dexis filtered images were significantly better at lesion detection compared to D-speed film. Also, all filtered digital images were significantly better at lesion detection than D-speed film.

Following traumatic brain injury (TBI), the hippocampus is particularly vulnerable to damage, and BDNF, an endogenous neurotrophin that activates the TrkB receptor, has been shown to play a key role in the brain’s neuroprotective response. Activation of the TrkB signaling pathway by BDNF in the CNS promotes cell survival and aids in cell growth. However, due to its inability to cross the blood brain barrier (BBB), the therapeutic advantages of BDNF treatment following TBI are limited. 7,8-Dihydroxyflavone (7,8-DHF) is a flavonoid that mimics the effects of BDNF, is a potent TrkB receptor agonist, and can successfully cross the BBB. Our lab has previously demonstrated that administration of 7,8-DHF post-TBI results in improved cognitive functional recovery, increased neuronal survival, and reduced lesion volume. The current study examined the effects of 7,8-DHF on neurogenesis and neuronal migration in the dentate gyrus following TBI. In this study, adult male Sprague-Dawley rats were subjected to moderate controlled cortical impact injury (CCI) or sham surgery. Injured animals received 5 daily single doses of 7,8-DHF treatment (i.p) or vehicle starting either 60 mins after injury or 2 days after injury. BrdU was administered in 3 doses at 2 days post-injury for animals sacrificed at day 15, and single daily doses at days 1-7 post-injury for animals sacrificed at day 28 to label cell proliferation. Animals were sacrificed at 15 days or 28 days post-injury to examine cell proliferation, generation of new neurons, and differentiation of newly generated cells using proliferation marker Ki67, immature neuronal marker DCX, and BrdU double-labeling with markers for mature neurons (NeuN), astrocytes (GFAP) and microglia (Iba1). We found that administration of 5 doses (5mg/kg) of 7,8-DHF beginning two days post-injury had the strongest effect on neurogenesis and migration, but did not have a significant prolonged effect on cell proliferation at 15 days post-injury. We also found that 7,8-DHF treatment given early or 2 days post-TBI did not affect the neuronal differentiation in the granule cell layer. However, a higher percentage of BrdU/GFAP+ and BrdU/IBa1+ cells were found in the hilus regions in 7,8-DHF treated animals, suggesting newly generated cells in this region are mostly glial cell types. Our results suggest that 7,8-DHF has neurotrophic-like therapeutic effects following injury, and due to increased neurogenesis (compared to injured animals treated with vehicle), may effectively contribute to greater cell survival long-term. Additionally, potential long-term survival coupled with increased outward migration from the subgranular zone may result in increased integration of newly formed neurons into existing hippocampal circuitry, further contributing to cognitive recovery.

Les mouvements sont le résultat de contractions musculaires dont l’organisation spatio-temporelle est régie par des structures cérébrales et médullaires. Etudier les circuits qui les sous-tendent est une étape indispensable pour renforcer nos connaissances des mécanismes à l’origine de la commande des mouvements volontaires et pour mieux comprendre la pathophysiologie des mouvements anormaux. Les muscles squelettiques sont innervés par les motoneurones alpha de la moelle épinière qui à leur out sont influencés par des neurones des aires corticales motrices. Cette voie descendante constitue la voie corticomotoneuronale (CM) et est responsable de l’exécution des mouvements volontaires. Le cortex moteur primaire est considéré comme une structure clé, au cœur du système, permettant l’intégration complexe de nombreuses influences multi-régions pour conduire aux comportements moteurs adéquats. Les interactions qui existent entre les différents groupes de neurones au sein de M1 influent en dernier lieu sur la sortie motrice. De la balance complexe entre ces influences inhibitrices et excitatrices, locales ou à distance va dépendre l’état d’excitabilité des cellules CM contrôlant les différents muscles. L'objectif de ce travail de thèse était d'étudier comment évoluent certains de ces mécanismes excitateurs ou inhibiteurs du cortex moteur primaire lorsque la commande motrice volontaire d’un muscle de l’index est modifiée. Nous avons étudié le rôle de ces mécanismes dans les changements d’excitabilité de la voie CM qui accompagnent la contraction tonique volontaire du muscle premier interosseus dorsalis (FDI) en comparant une tâche simple mais peu naturelle : l’abduction de l'index, une tâche naturelle plus complexe: la pince pouce-index et la condition de repos musculaire. Nous avons également étudié l’effet de la commande motrice sur l’interaction entre deux de ces mécanismes inhibiteurs l’un à longue latence, la LICI, l’autre à courte latence, la SICI. Enfin nous avons souhaité évaluer le décours temporel de ces mécanismes dans un cadre pathologique tâche-dépendant: la crampe de l’écrivain. Pour cela, nous avons utilisé la technique d’electromyographie de surface pour enregistrer les potentiels moteurs évoqués par la Stimulation Magnétique Transcrânienne. Nous avons mis en évidence une modulation tâche-dépendante de la LICI. Par rapport à la tâche d’abduction simple, la LICI s’estompait plus tôt lors de la tâche de pince pouce-index, traduisant une désinhibition plus précoce lors d’un mouvement plus complexe. Nous avons observé, et ce pour la première fois dans la littérature, une phase de facilitation nette qui suivait cette désinhibition, et qui était absente lorsque le muscle était au repos. Ces résultats sont également visibles dans un muscle voisin du FDI, non engagé dans la tâche; cela suggère que les mécanismes à l’origine de la facilitation sont impliqués dans l’activité volontaire sans spécificité topographique. L’interaction entre la LICI et la SICI n’a pas été modifiée par la tâche effectuée, laissant penser qu’elle n’est pas impliquée dans les changements d’excitabilité tâche-dépendants. Enfin, il apparaît que la désinhibition est retardée chez les sujets dystoniques quand le muscle est engagé dans un mouvement complexe de pince pouce-index mais pas dans une tâche simple d’abduction de l’index en comparaison à des sujets contrôles. Ces résultats illustrent le fait que lors d’un mouvement plus complexe, l’efficacité des circuits inhibiteurs du cortex moteur primaire est modifiée, ce qui permet de réguler l’activité des cellules CM, afin d’adapter la commande motrice au mouvement souhaité. Le fait que cette désinhibition soit retardée dans une tâche complexe (proche de la tâche affectée) mais pas dans une tâche simple chez les patients atteints d’une crampe de l’écrivain suggère que les mécanismes à l’origine de la désinhibition pourraient participer aux troubles moteurs qui caractérisent la maladie. / Movements are evoked by muscles contractions whose spatial organization is mediated by both spinal and cortical components. It is important to investigate the underlying circuitry of movements to extend our knowledge on how voluntary movement are controlled and to better understand the pathophysiology of movements disorders. The spinal alpha motoneurons innervating distal muscles are controlled at least in parts by corticomotoneuronal neurons located in the motor cortical areas. Among them, the primary motor cortex is considered as a key structure, performing a complex integration of multi-regional influences leading to appropriate motor behaviors. Axons from corticomotoneuronal (CM) cells of the primary motor cortex reach the spinal cord via descending motor pathway. CM neurons are influenced by local or distant, inhibitory and excitatory components which determine the balance of excitability. The aim of this thesis was to explore changes of some of the excitatory and inhibitory mechanisms of motor cortex as a function of the task being performed. We assessed the time course of Long-interval Intracortical Inhibition (LICI), Late Cortical Disinhibition (LCD) and Long interval Intracortical Facilitation (LICF), which are mechanisms that potentially act to modulate the output of CM controlling the first dorsal interosseus (FDI) muscle. We compared three conditions : index finger abduction (a simple but not natural task), precision grip between index and thumb ( amore natural and complex task), and rest. We also evaluated the effect of task on interaction between LICI and Short Interval Intracortical Inhibition (SICI). Finally, we assessed the time course of LICI in patients suffering from writer’s cramp. For this purpose, we used surface electromyography to record motor potentials evoked by Transcranial Magnetic Stimulation.We showed a task-dependent change in late inhibitory and disinhibitory components. Compared with abduction task, the LICI induced during precision grip was shorter, suggesting an early disinhibition in more complex task. The disinhibition was followed by a period of facilitation only during the active tasks, i.e. facilitation was not observed when all muscles were at restat rest. However, long interval intracortical facilitation can be observed in a muscle at rest not engaged in an active task if a neighboring muscle is activated. It is therefore likely that mechanisms underlying facilitation are associated with voluntary contraction albeit with lack of topographic specificity. Interaction between LICI and SICI was not modified between tasks, suggesting that it was not involved in task-dependent changes of cortical excitability. Lastly, disinhibition was shown to be delayed in dystonic patients when the FDI was actively engaged in a precision grip but not in index abduction, compared with control subjects. An explanation might be that mechanisms underlying disinhibition are impaired in thumb-index precision grip (a task similar to that inducing unwanted contractions in writer’s cramp). Task-specidic disruption of LICI and late cortical disinhibition may therefore be at least in part responsible for pathophysiology of dystonia. It is likely that during complex task, the efficacy of LICI, and more generally of motor cortex inhibitory mechanisms, is modified to allow adaptation of CM neurons activity to the functional requirements of the motor task being performed.

Les Troubles du Spectre Autistique (TSA) affectent un individu sur 100 en France et sont caractérisés par des déficits de la communication et des interactions sociales ainsi que par la présence d’intérêts restreints et de comportements répétitifs. Le laboratoire a démontré l’implication de protéines synaptiques dans le développement des TSA et en particulier celle des protéines SHANK. Ces protéines sont des protéines d’échafaudage présentes au niveau de la densité post-synaptique (PSD) des neurones glutamatergiques et interagissant avec différents partenaires. Dans le cadre de mon projet de thèse, nous nous sommes particulièrement intéressés à la protéine SHANK3. Des mutations au sein du gène SHANK3 ont été détectées chez environ 1 à 2% des patients, selon le degré de sévérité du retard mental. Un déficit de SHANK3 altère le fonctionnement synaptique. En effet, des analyses sur modèles de souris invalidées pour le gène SHANK3 ont montré une diminution de la densité des épines dendritiques, de la taille de la densité post-synaptique et de l’expression des partenaires protéiques de SHANK3. Mon modèle principal d’analyse a consisté en la reprogrammation de fibroblastes en cellules pluripotentes induites (iPSC « induced pluripotent stem cells »). Les iPSCs ont ensuite été sélectivement dérivées en neurones corticaux. Nos études se sont focalisées sur l’analyse des conséquences fonctionnelles de mutations de novo du gène SHANK3 retrouvées chez 4 patients à l’état hétérozygote et présentes au sein de l’exon 21. Ces mutations conduisent à un codon stop prématuré. En parallèle, nous avons obtenu des cellules de 4 individus témoins ne présentant aucun trouble psychiatrique identifié. L’analyse a porté d’une part sur des aspects morphologiques et d’autre part sur des aspects fonctionnels. Nous avons étudié l’effet des mutations sur la maturation et les caractéristiques morphologiques des épines dendritiques. Nous avons établi un protocole permettant une analyse détaillée de la morphologie en 3D des épines dendritiques et suivi leur maturation. Un résultat majeur est l’observation d’une diminution de la densité des épines sur les dendrites des neurones pyramidaux issus des patients par rapport aux témoins. Comme attendu, la maturation des épines n’est pas complètement achevée mais varie peu dans son évolution d’un individu à l’autre (témoins vs. patients). Nous avons poursuivi ces études par deux approches fonctionnelles : l’imagerie calcique et des études d’électrophysiologie. Les données électrophysiologiques sont en cours d’analyse. En conclusion, nous avons pu obtenir des cultures de neurones corticaux glutamatergiques et les maintenir en culture durant 40 jours pour effectuer différentes analyses à un stade de maturation suffisant pour la mise en évidence de phénotypes morphologiques et fonctionnels. Nous avons principalement observé une diminution de des densités synaptiques et de maturation des épines dendritiques au sein des neurones issus de patients liée à des altérations d’oscillations calciques spontanées. / Autism Spectrum Disorders (ASD) is a neurodevelopmental disorder affecting 1% of population ; characterised by impairments in social interaction and reciprocal communication as well as repetitive and stereotyped behaviors. The work of the laboratory lead to the identification of several genes associated with ASD, among which genes of the synaptic pathway such as SHANK. The SHANK proteins are scaffolding proteins of the post-synaptic density (PSD) of glutamatergic neurons and interact with several partners. In my thesis project, we were particularly interested in SHANK3 mutations. First, Shank3 mutations represent up to 2.12% of ASD cases with moderate to high ID. A SHANK3 deficit leads to the alteration of the synaptic functioning. Indeed, studies of mice KO for SHANK3 gene showed a decrease of the dendritic spines density, of the PSD size and of the expression of SHANK3 partners. My principal model of analysis consisted in the reprogrammation of fibroblasts into induced pluripotent stem cells (iPSCs). Then, the iPSCs were selectively derived into cortical neurons. Our studies were focus on the analysis of functional consequences of SHANK3 de novo mutations found within 4 patients. These mutations are heterozygous and within the exon 21. They result in a premature stop codon. In parallel, we obtained cells from 4 healthy individuals. The work was about the morphological and functional aspects. We analysed the mutations effects on the maturation and morphological caracteristics of the dendritic spines. We finalized a protocol that enabled a detailed analysis of the spine dendritic 3D morphology and their maturation follow-up. A important result was the observation of a decrease of the spine density on pyramidal neurons dendrites from patients compared to those from controls. Moreover, spines maturation was not fully accomplished but was not much different in its evolution between individuals (controls vs patients). Then, we used two functional skills : calcium imaging and electrophysiological experiments. The electrophysiological data are in progress. To conclude, we succeeded in the obtention of glutamatergic cortical neurons and to maintain them in culture during 40 days in order to realize some analysis at a sufficient maturation stage to observe morphological and functional phenotypes. We mainly observed a decrease of the dendritic spines density and maturation for the neurons from patients, with alterations of the spontaneous calcium oscillations.

A lesão medular (LM) promove uma condição devastadora que resulta em comprometimentos sensorial e motor, impedindo o desempenho funcional do indivíduo. O entendimento sobre os mecanismos envolvidos na reorganização cortical após uma eficiente estratégia terapêutica pode fornecer informações relevantes para o aprimoramento de tecnologias assistivas, como neuropróteses. Este trabalho teve como objetivos investigar as alterações funcionais e estruturais no córtex sensório-motor de ratos Wistar submetidos à atividade física na esteira após a lesão medular contusa. O objetivo secundário foi investigar a reorganização de outras áreas relacionadas ao comportamento motor, como o estriado, a substância negra e a medula espinhal. 17 ratos foram divididos aleatoriamente em três grupos: treinado (TR, n = 6), controle (CTL, n = 7) e sham (n = 4). Todos os animais receberam um implante de matriz de micro-eletrodos no córtex sensório-motor. Os animais dos grupos TR e CTL foram submetidos à LM contusa e os do grupo sham somente ao procedimento cirúrgico sem a LM. Foi realizada a avaliação eletrofisiológica antes da LM e nos 1º, 3º, 5º, 7º, 14º, 21º, 28º, 35º, 42º, 49º e 56º dias pós-operatórios (dPO) da lesão. O grupo TR realizou treinamento motor em uma esteira com velocidade controlada, tendo início no 5º dPO e foi realizado por 15 minutos, cinco vezes na semana. Os outros dois grupos ficaram sem treinamento. No 57º dPO, os animais foram sacrificados, e as medulas espinhais e os encéfalos foram coletados para análise imunohistoquímica. Os resultados eletrofisiológicos mostraram que houve uma diminuição significativa do número de neurônios corticais registrados ao longo do tempo para os animais com LM; existem neurônios que disparam em função do movimento mesmo após a LM, sendo o número desses neurônios significativamente menor nos animais controles; observou-se um padrão de atividade de potencial de campo local do córtex sensório-motor que antecede a ativação muscular. A análise imunohistoquímica do encéfalo mostrou diminuição significativa da imunoreatividade para o marcador de neurofilamentos no córtex motor do grupo CTL e no estriado para os grupos CTL e TR; no córtex somatossensorial houve aumento significativo desta marcação para o grupo TR; não houve diferença da imunoreatividade entre os grupos para o marcador de neurofilamentos na substância negra e nem para a proteína de vesícula, sinaptofisina, nas diferentes áreas encefálicas. Na medula espinhal verificou-se, na região rostral à lesão, aumento significativo da imunoreatividade para os marcadores de proteína associada ao microtúbulo 2 (MAP2), da sinapsina (SYS) e da proteína glial fibrilar ácida (GFAP) para o grupo TR e diminuição significativa da SYS para o grupo CTL; no segmento central à lesão, houve diminuição significativa da imunoreatividade para os marcadores MAP2 e SYS e aumento significativo para GFAP e OX-42 para os grupos CTL e TR; no segmento caudal à lesão houve diminuição significativa da imunoreatividade para os marcadores GFAP, SYS, MAP2 e OX-42 para o grupo CTL e aumento significativo do marcador MAP2 para o grupo TR. Os resultados obtidos neste trabalho mostram que a atividade física realizada na esteira após a LM é capaz de promover reorganização cortical sensório-motora e medular por meio da neuroproteção e neuroregeneração / Spinal cord injury (SCI) results in a devastating condition, which leads to motor and sensory deficits that impair the injured person functional performance. The understanding about the mechanisms involved in cortical reorganization after an efficient therapeutic strategy can provide relevant information for the improvement of assistive technology, such as neuroprosthesis. This work aimed to investigate the functional and structural changes in the sensorimotor cortex of spinal cord injured Wistar rats, which were submitted to treadmill training. A secondary objective was to investigate the reorganization of other areas related to the movement, such as striatum, substantia nigra and spinal cord. 17 rats were randomly divided into three groups: trained (TR, n = 6), control (CTL, n = 7) and sham (n = 4). All animals received a microelectrodes array in the sensorimotor cortex. Control and trained animals were submitted to contusive SCI and the sham group only to the surgical procedure without the contusion. Electrophysiological assessments were accomplished before SCI and on the 1st, 3rd, 5th, 7th, 14th, 21st, 28th, 35th, 42nd, 49th and 56th post-operative days (POd). The TR group performed the motor training on a treadmill with controlled speed, starting on the 5th POd and it was done for 15 minutes, five times per week. The other two groups did not receive any training. On the 57th POd, the animals were sacrificed and the spinal cords and brains were collected for immunohistochemistry analysis. Electrophysiological data revealed that there was a significant decrease of the cortical neurons number with time for the injured animals; there was neurons that fire in function of the movement even after the SCI, but the number of these neurons was significant smaller in CTL group; it was observed a pattern of sensorimotor local field potential activation before the muscular activation. Brain immunohistochemistry data showed immunoreactivity significant decrease for neurofilament staining of the CTL motor cortex and CTL and TR striatum; the somatosensory cortex had a significant increase of this maker for TR group; there was no difference between groups for the neurofilament maker in the substantia nigra and neither to the vesicle protein maker, synaptophysin, in the different brain areas. In the spinal cord rostral to the lesion there were significant increase of the immunoreactivity for the microtubule associated protein 2 (MAP2), synapsin (SYS) and glial fibrillary acidic protein (GFAP) for the TR group and significant decrease of SYS for the CTL group; central to the lesion, there were immunoreactivity significant decrease for the MAP2 and SYS makers and a significant increase for the GFAP and OX-42 makers in CTL and TR groups; and caudal to the lesion, there were immunoreactivity significant decrease for the GFAP, SYS, MAP2 and OX-42 for the CTL group and significant increase of MAP2 maker for the TR group. Together these findings show that the physical activity on a treadmill after spinal cord injury is capable of producing sensorimotor cortex and spinal cord reorganization throughout the neuroprotection and neuroregeneration

O cérebro humano é considerado uma rede complexa em termos estruturais e funcionais em diferentes escalas. A caracterização da arquitetura desta rede pode ser considerada uma importante ferramenta no auxílio ao estudo de diferentes doenças neurodegenerativas. No presente estudo propusemos um software desenvolvido em JAVA para investigar esta arquitetura com base na correlação estatística de características morfológicas entre diferentes regiões do córtex. Foram utilizados dados de espessura cortical obtidos a partir de imagens de ressonância magnética de 191 indivíduos saudáveis e 93 pacientes com epilepsia. Foi proposto um modelo não linear para considerar o efeito da idade na espessura cortical com identificação de duas etapas: amadurecimento e envelhecimento. Os pacientes, quando comparados aos controles, apresentaram uma redução significativa na espessura cortical fundamentalmente nas regiões para-central, pericalcarina e do pré-cuneo no hemisfério direito. Esta diminuição também se manifestou ao longo da idade, com uma maior taxa de queda na região parahipocampal direita. Considerando a conectividade anatômica aqui calculada, o grupo de pacientes evidenciou alterações em 31\\% das possíveis conexões e de forma difusa. Adicionalmente, nas redes cerebrais dos pacientes houve uma diminuição de 15\\% no comprimento médio do caminho e no coeficiente de agrupamento. Aplicando-se um algoritmo de agrupamento, foram detectadas três comunidades para os indivíduos saudáveis e seis comunidades para os pacientes, confirmando uma quebra de organização estrutural neste ultimo grupo. Com este software esperamos trazer à comunidade mais uma ferramenta para análise das conexões cerebrais e suas modificações em determinadas patologias, contribuindo com seu entendimento e possível diagnóstico. / The human brain can be characterized as a complex network structurally and functionally in different levels. The description of the architecture of this network can be considered an important tool in understanding different neurodegenerative diseases. In the present study, we developed a software in JAVA to investigate this architecture based on statistical correlation of morphological characteristics between different cortex areas. It was used a database of cortical thickness obtained from magnetic resonance images of 191 healthy subjects and 93 patients with epilepsy. It was implemented a non-linear model to consider the effect of age in cortical thickness with identification of 2 stages: maturation and aging. The patients, when compared to healthy subjects, showed a significant reduction in cortical thickness, particularly at the areas precentral, pericalcarine and pré-cuneus of right hemisphere. This decrease also could be noted through the age, with a higher decrease rate at the right parahipocampal area. Considering the anatomical connectivity calculated, the patients group showed diffuse changes in 31\\% of the possible connections. Furthermore, in the patients brain network it was found a decrease of 15\\% in the characteristic path length and clustering coefficient. By applying a clustering algorithm, 3 clusters were detected in the healthy subjects and 6 clusters in the patients, confirming a breakdown of the structural organization in this last group. With our software we hope to bring to the community another tool to improve the brain connectivity analysis and its modifications in some pathologies, contributing with its understanding and possible diagnosis.

In this thesis the optical method of Near-Infrared-Spectroscopy (NIRS) is evaluated with regards to its capability of non-invasive detection of Leão´s cortical spreading depression (CSD) and spontaneous peri-infarct-depolarizations (PID). With the NIR-spectrometer NIRO 500 (Hamamatsu, Japan) regional cerebral oxy-genation (rCBO) changes were measured during CSD in 9, and during PID in 10 barbiturate anesthatized rats. The method if NIRS that relies on oxygen-dependent absorption changes of hemo-globin and cytochrome oxydase as well as the high penetrability of biologic tissues for light in the range between 700 and 1000 nm proved suitable to detect and to distinguish both CSD and PID experimentally. This distinction relies on the robust decrease of deoxy- and increase of oxyhemo-globin concentrations (i.e. a relative hyperoxemia) during CSD while PID is cha-racterized by an initial increase of deoxy- and decrease of oxyhemoglobin (relative hypooxemia). Despite the profound anatomical differences between gyrencephalic humans and lyssencephalic rats, the observed patterns of rCBO changes may guide the inter-pretation of future NIRS measurements in patients with migraines with aura (CSD) or stroke (PID). However, for concentration changes of oxydized cytochrome aa3 with its low con-centration compared to the hemoglobins, the pathophysiological interpretation of the data obtained with NIRO 500 is confounded by the limits of attenuation mea-surements at only four wavelengths. A validation of the cytochrome oxydase signal and an improved quantification of all concentration changes is highly desirable and may be achieved by employment of a continuous-wavelength device measuring the full spectral range of the near infrared. It would also allow to measure the mean optical pathlength in the highly scattering tissue and to correct for its physiologically occuring changes e.g. by measurements at the water absorption peak. Similar improvements would enhance the value of the method for further physiolo-gical and pathophysiological studies because NIRS provides the unique opportu-nity to obtain simultaneous data on blood oxygenation as well as the redox state of the mitochondrial cytochrome oxydase.