The development of the field of the science of ultra-cold matter has opened some exciting possibilities in exploring the quantum-mechanical processes which dominate matter interactions at the sub-microscopic scale. Although methods of cooling atoms are well established, molecular cooling is made difficult by molecules’ additional vibrational and rotational degrees of freedom. It was the goal of the research in this work to approach molecular cooling indirectly, by using broadband shaped-pulse photoassociation for the generation of tightly bound ultracold Rb₂ molecules. The experiments towards this goal conducted by our group included a pumpdecay experiment to observe the generation of ground state singlet or triplet molecules. However, attempts to observe an increase in ground state population have been unsuccessful. A pump-probe study of wavepacket dynamics in the 5s+5p electronic state was conducted in order to determine the appropriate timing for the application of an additional pulse to dump population into the ground state. Although the attempt to observe wavepacket oscillations has been unsuccessful, pump-probe studies have yielded the observation of loosely bound excited state molecules as a result of the photoassociation pulse. These results are promising as a first stage in a fully coherent pump-dump approach to stabilisation into the lowest vibrational ground state. This thesis will provide an introduction and overview to the concerns involved in addressing the problem of molecular cooling and generation. Experimental techniques will be discussed including pulsed laser systems, optical parametric amplifi- cation, and the presentation of an original design for pulse shaping with an acoustooptic modulator. The emphasis of these discussions will be on the principles and operating procedures required for the use of these devices as home-built systems. The thesis will conclude with the results of pump-probe experiments utilising the pulse shaper as a spectral cutting device.

Ácido clorogênico (ACG) é o termo utilizado para designar um grupo de compostos fenólicos oriundos da reação de esterificação entre ácidos hidroxicinâmicos (p-cumárico, caféico e ferúlico) e ácido quínico. São amplamente encontrados em produtos naturais e exercem ações antioxidantes, citotóxicas, antitumorais, antibacterianas, antifúngicas e antiinflamatórias. Apesar da descrição dos seus efeitos antiinflamatórios em diferentes modelos experimentais, a literatura é carente quanto suas ações específicas em funções inflamatórias de neutrófilos. Assim, o objetivo do presente trabalho foi investigar os efeitos do ACG sobre funções de neutrófilos in vitro. Neutrófilos foram obtidos do lavado peritoneal de ratos Wistar, machos, 4 horas após a injeção local de glicogênio de ostra a 1% e foram incubados, na presença ou ausência de LPS, com ACG nas concentrações de 25, 50, 100 ou 1000 µM. A viabilidade celular (exclusão por trypan-blue), a secreção de citocinas e prostaglandina E2 (ensaio imunoenzimático); a produção de óxido nítrico (reação de Griess); a expressão de moléculas de adesão (citometria de fluxo); a aderência e a quimiotaxia foram avaliadas. Os resultados obtidos mostraram que o ACG não afetou as secreções do fator de necrose tumoral-α,de interleucina 1β, do óxido nítrico e de prostaglandina E2 em condições basais ou após estimulação pelo LPS. Diferentemente, a incubação com ACG inibiu a aderência de neutrófilos à cultura primária de célula endotelial de microcirculação de ratos e a quimiotaxia in vitro frente ao peptídeo formilado (N-formilmetionil- leucil-fenilalanina). Estes últimos efeitos podem estar associados à ação do ACG sobre a expressão de moléculas de adesão, já que o ACG elevou a expressão de L-selectina e reduziu as expressões de β2 integrina e da molécula de adesão plaqueta e endotélio. Os dados obtidos não foram dependentes de alterações da viabilidade celular. Em conjunto, os resultados mostram que o ACG possui efeito direto sobre funções de neutrófilos responsáveis pela interação ao endotélio microvascular e pela migração orientada em resposta a estímulo inflamatório. Estes efeitos podem contribuir, pelo menos em parte, para redução da migração de neutrófilos para focos de inflamação na vigência de tratamento com ACG amplamente descrita na literatura. / Chlorogenic acid (CGA) is the term utilized to design a group of phenolic compounds from the sterification reaction between the hydroxycinnamic acids (p-coumaric, caffeic and ferulic acid) and the quinic acid. They are largely found in natural products and exert anti-oxidant, citoxic, anti-tumoral, anti-bactericidal, anti-fungicidal and anti-inflammatory activity. Besides the description of its anti-inflammatory effect in different experimental models, the literature is scarse regarding its specific actions in neutrophil inflammatory functions. Therefore, the aim of this present work was to investigate the CGA effects on neutrophils functions in vitro. Neutrophils were obtained from the peritoneal lavage of male Wistar rats four hours after a local injection of oyster glycogen 1% and were incubated, in the presence or absence of LPS, with CGA in the concentrations of 25, 50, 100 or 1000 µM. The cellular viability (trypan-blue exclusion), the cytokines secretions (enzyme-linked immunosorbend assay), production of nitric oxide (Greiss reaction); adhesion molecules expression (flow citometry), adherence and chemotaxis in vitro were assessed. The results shows that the CGA did not affect the secretion of the tumor necrosis factor-α , of nitric oxide and prostaglandin E2 and only the incubation with 50µM of CGA inhibited the secretion of Interleukin 1β after stimulation with LPS. Differently, the incubation with CGA inhibited the adherence of neutrophils on the primary culture of endothelial cell from the micro-circulation of rats and the chemotaxis in vitro against formylated peptide (fenyl-metyl-leucyl-alanin). This lasts effects might be associated with the action of CGA on the expression of adhesion molecules, hence this compound was capable of elevate the expression of L-selectin and reduce the expression of β2 integrin and PECAM-1. The data here obtained are not dependent of cellular viability alterations. In conjunct, the data here obtained shows that the CGA has direct effect on neutrophils functions responsible of the interaction with the micro vascular endothelium and the oriented migration in response to an inflammatory stimuli. These effects can contribute, at least in part, to the decreased neutrophil migration in the inflammatory focus in the presence of CGA treatment.

A study of Molecular Dynamics using computational methods and modeling provides the understanding on the interaction of the atoms, properties, structure, and motion and model phenomenon. There are numerous commercial tools available for simulation, analysis and visualization. However any particular tool does not provide all the functionalities. The main objective of this work is the development of the visualization tool customized for our research needs to view the three dimensional orientation of the atom, process the simulation results offline, able to handle large volume of data, ability to display complete frame, atomic trails, and runtime response to the researchers' query with low processing time. This thesis forms the basis for the development of such an in-house tool for analysis and display of simulation results based on Open GL and MFC. Advantages, limitations, capabilities and future aspects are also discussed. The result is the system capable of processing large amount of simulation result data in 11 minutes and query response and display in less than 1 second. / by Meha Garg. / Thesis (M.S.C.S.)--Florida Atlantic University, 2010. / Includes bibliography. / Electronic reproduction. Boca Raton, Fla., 2010. Mode of access: World Wide Web.

Neuronal cell adhesion molecules of L1 family play a critical role in proper nervous system development. Various mutations on human L1-CAM that lead to severe neurodevelopmental disorders like retardation, spasticity etc. termed under L1 syndrome. The vertebrr their roles in axon pathfinding, neurite extension and cell migration, howeverate L1CAM and its homolog in Drosophila, neuroglian (nrg) have been well studied fo, much less is known about the mechanisms by which they fine tune synaptic connectivity to control the development and maintenance of synaptic connections within neuronal circuits. Here we characterized the essential role of nrg in regulating synaptic structure and function in vivo in a well characterized Drosophila central synapse model neuron, the Giant Fiber (GF) system. Previous studies from our lab revealed that the phosphorylation status of the tyrosine in the Ankyrin binding FIGQY motif in the intracellular domain of Nrg iscrucial for synapse formation of the GF to Tergo-Trochanteral Motor neuron (TTMn) synapse in the GF circuit. The present work provided us with novel insights into the role of Nrg-Ank interaction in regulating Nrg function during synapse formation and maintenance. By utilizing a sophisticated Pacman based genomic rescue strategy we have shown that dynamic regulation of the Neuroglian–Ankyrin interaction is required to coordinate transsynaptic development in the GF–TTMn synapse. In contrast, the strength of Ankyrin binding directly controls the balance between synapse formation and maintenance at the NMJ. Human L1 pathological mutations affect different biological processes distinctively and thus their proper characterization in vivo is essential to understand L1CAM function. By utilizing nrg14;P[nrg180ΔFIGQY] mutants that have exclusive synaptic defects and the previously characterized nrg849 allele that affected both GF guidance and synaptic function, we were able to analyze pathological L1CAM missense mutations with respect to their effects on guidance and synapse formation in vivo. We found that the human pathological H210Q, R184Q and Y1070C, but not the E309K and L120V L1CAM mutations affect outside-in signaling via the FIGQY Ankyrin binding domain which is required for synapse formation and not for axon guidance while L1CAM homophilic binding and signaling via the ERM motif is essential for axon guidance in Drosophila. / Includes bibliography. / Dissertation (Ph.D.)--Florida Atlantic University, 2014. / FAU Electronic Theses and Dissertations Collection

O aparecimento de cepas microbianas com resistência aos antibióticos comumente usados em âmbito mundial constitui um sério problema de saúde pública, estimulando a busca por novos compostos antimicrobianos para os quais a resistência ainda não foi adquirida. A secreção cutânea de várias espécies de anuros (rãs, sapos e pererecas) é uma rica fonte de peptídeos com amplo espectro de atividade antibacteriana e antifúngica, com grande potencial para o desenvolvimento de fármacos. O presente trabalho visou à investigação da presença de agentes antimicrobianos na secreção cutânea das espécies brasileiras Dermatonotus muelleri, Leptodactylus labyrinthicus, Phyllomedusa burmeisteri, Rhinella icterica, Trachycephalus resinifictrix. Utilizando a estimulação mecânica do tegumento para extração e posteriormente a liofilização dessas secreções. Os testes antimicrobianos foram realizados através da técnica de disco difusão, onde as secreções testadas foram solubilizadas em diferentes solventes e em placas contendo bactérias Gram-negativas e Gram-positivas. As secreções com maior potencial antibacteriano foram fracionadas por Cromatografia líquida de alta eficiência fase reversa em uma coluna C8 e C18 5μm. Tendo suas frações também testadas em disco-difusão. As frações que formaram halos de inibição foram submetidas à espectrometria de massa para a identificação de suas moléculas. Desta forma foi comprovado a ação antimicrobiana das secreções de Rhinella icterica, Phyllomedusa burmeisteri e Trachycephalus resinifictrix e de suas receptivas frações. / The appearance of microbial strains that are resistant to common antibiotics used in a global scope represents a serious public health issue, stimulating the search for new antimicrobial compounds that resistance was not acquired yet. The cutaneous secretion of several anurans species (frogs, toads and tree frogs) is a rich source of peptides with a broad spectrum of antimicrobial and antifungal activity, with a big potential to drug development. The present work aimed the investigation of the presence of antimicrobial agents in the cutaneous secretion of the Brazilian species Dermatonotus muelleri, Leptodactylus labyrinthicus, Phyllomedusa burmeisteri, Rhinella icterica, Trachycephalus resinifictrix. For the extraction of these secretions it was utilized the integument mechanical stimulation and later on these secretions were lyophilized. For the antimicrobial tests it was used the disk diffusion technique, where the test secretions were solubilized in different solvents and in plates containing Gram-negative and Gram-positive bacteria. The secretions with the highest antimicrobial potential were fractionated by a high-performance liquid chromatography reverse phase in the columns C8 and C18 5μm. These fractions were also tested in disk diffusion. The fractions that formed inhibition zones were submitted to mass spectrometry for the identification of their molecules. This way it was evidenced antimicrobial activity of secretions from Rhinella icterica, Phyllomedusa burmeisteri and Trachycephalus resinifictrix and from their respective fractions.

O glioblastoma multiforme (GBM) é uma neoplasia do sistema nervoso central (SNC), caracterizada por uma elevada capacidade proliferativa e migratória. O desenvolvimento do tumor provoca uma remodelação da matriz extracelular (MEC) que facilita a migração tumoral. Eicosanóides são moléculas lipídicas importantes na carcinogênese e a sua síntese está correlacionada com o grau de desenvolvimento do tumor. As prostaglandinas são eicosanóides envolvidas na estimulação da angiogênese, na adesão celular e proliferação celular. Este estudo tem por objetivo avaliar in vitro o efeito da PGE2 na expressão moléculas da MEC e das moléculas de adesão envolvidas na migração, em células U87MG e U251MG. As células U251MG e U87MG foram tratadas com PGE2 (10µM) e Ibuprofeno (25µM), por um período 48hs. As proteínas da MEC foram analisadas por RT-qPCR após o tratamento. Foram realizadas reações de imunohistoquímica para as moléculas da MEC. As alterações foram encontradas na expressão de laminina, fibronectina, colágeno tipo IV e as integrinas αv , α3 e α5 para células U87MG . Observamos imunomarcação nas linhas celulares para colágeno tipo IV, laminina e fibronectina. Concluímos que o tratamento com IBU e PGE2, afeta a expressão gênica de moléculas de MEC. / Glioblastoma Multiforme (GBM) is a neoplasm of the central nervous system (CNS), characterized by a high proliferative and migratory capacity. Tumor development leads to extracellular matrix (ECM) remodeling and facilitating the migration of these cells. Eicosanoids are important lipid molecules in carcinogenesis, and their synthesis often correlates with the degree of tumor development. Prostaglandins are eicosanoids involved in the stimulation of angiogenesis, cell adhesion and cell proliferation. This study is aimed to evaluate the expression of several ECM molecules involved in migration after altering the concentration of prostaglandins, using human glioma cell lines as an in vitro model. The cell lines U87MG and U251MG were treated with PGE2 (10µM) and Ibuprofen (25µM), for a predetermined period of 48hs. Proteins involved in extracellular matrix were analyzed by RT-qPCR after treatment in vitro. Immunohistochemical reactions were also performed for the ECM molecules. Changes were found in the expression of laminin, fibronectin, type IV collagen and αv, α3 and α5 integrins in cells U87MG. We observed immunostaining in cell lines to type IV collagen, laminin and fibronectin. In conclusion, Ibuprofen and PGE2, affects gene expression of ECM molecules.

Thesis advisor: Lawrence T. Scott / This dissertation describes the work that has been carried out towards accessing a C3v [6,6] nanotube end-cap through rational chemical synthesis. Continued advancement in carbon nanotube research has driven scientists to develop a successful route to usable quantities of nanotubes that are homogeneous in structure. Due to the current inability to separate nanotube mixtures efficiently, researchers in fields ranging from chemistry to computer science have been unable to exploit fully all that these unique molecules have to offer. Our envisioned approach to this obstacle involves elongation of a template endcap using iterative growth chemistry. The final stage of the proposed end-cap synthesis involves the execution of a six fold cyclodehydrogenation reaction. To carry out this desired transformation, a new microwave assisted variant of the anionic cyclodehydrogenation reaction has been developed. Through this chemistry we have been able to access a variety of both known and novel polycyclic aromatic hydrocarbons, often in impressively high yields. We hope that this chemistry will be useful to us in accessing the target nanotube end-caps, and to others in providing a new route to accessing a variety of polycyclic aromatic hydrocarbon cores. / Thesis (PhD) — Boston College, 2008. / Submitted to: Boston College. Graduate School of Arts and Sciences. / Discipline: Chemistry.

Dois peptídeos, designados Let#1 e Let#2, foram delineados do segundo laço extracelular da proteína NaPi2b. Após conjugação, os peptídeos induziram produção de anticorpos específicos em coelhos e camundongos. Os anticorpos com maiores títulos foram selecionados para ensaios complementares. Estes anticorpos reconheceram os peptídeos conjugados aos carreadores pelos métodos de ELISA e WB, não havendo reação cruzada quando testados com a proteína carreadora livre e com antígeno sintético inespecífico. Após a completa validação, foi possível observar que os anticorpos anti-peptídeos reconhecem NaPi2b nativa, presente na superfície de células OV-CAR, bem como mostraram reconhecimento de um alvo comum em todos os soros analisados, mesmo quando o soro era considerado negativo para COV pelo teste comercial. Este reconhecimento não foi observado quando as amostras foram analisadas pelo soro pré-imune dos animais teste, sugerindo um reconhecimento específico dos anticorpos produzidos. / Two peptides, designated Let#1 and Let#2, were outlined from the second extracellular loop of the NaPi2b protein. After conjugation, the peptides induced the production of specific antibodies in rabbits and mice. Antibodies with higher titers were selected for complementary tests. These antibodies recognized peptides conjugated to the carrier by ELISA and WB, with no cross-reaction when tested with the free carrier protein and nonspecific synthetic antigen. After complete validation, it was observed that the anti-peptide antibodies recognize native NaPi2b protein present on the OV-CAR cell surface and showed recognizing a common target in all sera tested, even when the serum was considered negative for ovarian carcinonoma by commercial test. This recognition was not observed when the samples were analyzed by pre-immune serum of test animals, suggesting specific recognition of antibodies produced.

Neste trabalho, analisamos a interação de pequenas moléculas, marcadores hidrofóbicos, com hemoglobina, em diferentes estados: monocristal, pó e solução aquosa. Os métodos de análise empregados, são baseados nas teorias de relaxação em líquidos e técnicas não lineares de ressonância ST-RPE (transferência de saturação), fornecendo informações sobre mudanças locais nas vizinhanças desses marcadores. Um dos marcadores hidrofóbicos, o TEMPO, mostrou uma anisotropia considerável nos espectros de RPE do monocristal de hemoglobina que está relacionado com o empacotamento molecular da proteína do cristal. A associação desses métodos de análise conduziu a importantes informações sobre mudanças na camada de hidratação em várias proteínas: hemoglobina, mioglobina e lisozima, monitoradas pelo marcador covalente derivado da maleimida, e induzidas pela temperatura, sob diferentes condições de hidratação. Desta forma o uso da espectroscopia de RPE especialmente com simulação espectral e DT-RPE mostro ser um método potente e ainda não explorado no estado de hidratação de proteínas / In this work, the interactions of small molecules, hydrophobic spin labels, with hemoglobin, under different states was analysed: single crystal, powder and aqueous solution. The methods of analysis employed, are based in relaxation theory in liquids and non-linear techniques, saturation transfer (ST-EPR), giving informations on the local changes in neighbourhood of the labels. One of the hydrophobic labels, TEMPO, showed a considerable anisotropy in the hemoglobin single crystal spectra, a result related to the molecular packing in the protein single crystal. The association of the techniques of analysis all together lead to important informations an temperature induced changes in the hydration layer in several proteins: hemoglobin, myoglobin, NEM*, a maleimide derivated, in different conditions of hydration. In this way the use of EPR spectroscopy and particularly with spectral simulations and ST-EPR, proved to be a powerful and not yet very much explored method to study the problem of protein hydration

As células dendríticas (DCs) são células apresentadoras de antígeno suscetíveis a muitos sinais de ativação, os quais induzem diferentes padrões de ativação e resposta de linfócitos T. Neste trabalho, estudamos os efeitos de dois sinais de perigo, a febre e o LPS, sobre o fenótipo e função de DCs. A exposição de DCs ao calor não afetou a expressão de CD80 e CD86, capacidade endocítica ou produção de citocinas, características que foram afetadas pelo LPS. Entretanto, DCs expostas ao calor apresentaram uma maior atividade aloestimuladora e maior expressão de CD40. Quando DCs ativadas com LPS foram também estimuladas pelo calor, nenhuma alteração fenotípica na superfície celular foi notada, mas as DCs induziram maior produção de IFN-<font face=\"symbol\">g por linfócitos T alogenêicos e favoreceram a proliferação de linfócitos T CD8+. Esses dados indicam que a febre pode favorecer uma resposta celular, através de sua ação sobre DCs ativadas, com provável participação do CD40. Além de seu significado fisiológico, esse fenômeno pode ter aplicação em estratégias imunoterapêuticas. / Dendritic cells (DCs) are the main antigen presenting cells and susceptible to many activation signals that will induce different patterns of DC activation and of T cell responses. In this work we studied the effects of two danger signals, fever and LPS, on DC phenotype and function. Exposure of immature monocyte-derived dendritic cells to heat did not affect CD80 and CD86 expression, their endocytic ability, or their cytokine production, characteristics that were affected by LPS. However, heat-exposed DCs presented a higher allo-stimulatory activity and enhanced CD40 expression. When LPS activated DCs were also stimulated by heat, no cell surface phenotypic change was noted but these cells induced a higher IFN-<font face=\"symbol\">g secretion by allogeneic T lymphocytes and favored the proliferation of CD8+ cells. These data indicate that fever may cause a bias toward cellular responses, through its action on activated DCs, probably through CD40. Besides its physiological meaning, this phenomenon may have applications in immunotherapeutic strategies.