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The β-acyloxyalkyl radical rearrangement has been known since 1967 but its mechanism is still not fully understood, despite considerable investigation. Since the migration of a β-trifluoroacetoxy group generally proceeds more rapidly and with more varied regiochemistry than its less electronegative counterparts, this reaction was studied in the hope of understanding more about the subtleties of the mechanism of the β- acyloxyalkyl radical rearrangement. The mechanism of the catalysed rearrangement of Nalkoxy- 2(1H)-pyridinethiones was also explored because preliminary studies indicated that the transition state (TS) for this process was isoelectronic with TSs postulated for the β-acyloxyalkyl radical and other novel rearrangements. ¶ A kinetic study of the rearrangement of the 2-methyl-2-trifluoroacetoxy-1-heptyl radical in solvents of different polarity was undertaken using a radical clock method. Arrhenius equations for the rearrangement in each solvent were: hexane, log10[kr (s-1)] = 11.8±0.3 – (48.9±0.7)/ θ; benzene, log10[kr (s-1)] = 12.0±0.2 – (43.7±0.8)/ θ; and propionitrile, log10[kr (s-1)] = 11.9±0.2 – (42.0±0.3)/ θ. Rate constants at 75˚C were: hexane, kr = 2.9 × 104; benzene, kr = 2.8 × 105; and propionitrile, kr = 4.0 × 105 s-1. The equilibrium constant for the reversible rearrangement at 80°C in benzene was 15.1 <K < 52.9. ¶ A regiochemical study with oxygen-labelled radicals revealed that trifluoroacetoxy group migration occurs with 66-83% label transposition (3,2 shift). The proportion of 3,2 shift is decreased by polar solvent, high temperature and low concentration of the reducing agent. Results of labelling experiments were consistent with cooperative 1,2 and 3,2 shifts, the former having Ea 9.5 kJmol-1 higher than the latter in benzene solution. ¶ An esr study of nine β-oxygenated radicals revealed that the temperaturedependent equilibrium conformation is controlled by a balance between steric and stereoelectronic effects. The influence of the latter is increased by electron-attracting β- substituents. Barriers to C α–C β rotation in β-oxyethyl radicals are approximately the same as for the propyl radical. Consequently, there is no significant through-space interaction between the β-substituent and the unpaired electron. ¶ Experimental results were consistent with a mechanism involving a combination of polarized 1,2 and 3,2 concerted shifts. The results may also be rationalised by the intermediacy of a contact ion pair, as well as combinations of the three options. ¶ The rearrangement of N-alkoxy-2(1H)-pyridinethiones is catalysed by oxidants, Lewis acids and protic acids. Pseudo first order kinetics are observed and there are moderate solvent effects. The migration of a 1,1-dideuteroallyl group occurs almost exclusively in a 1,4 sense. Migration of an enantiomerically enriched 1-phenylethyl group proceeds with predominant retention of configuration in chloroform, but with virtual racemisation in acetonitrile. Migrating groups do not become diffusively free during the rearrangement. Substituents which stablise positive charge at C1 migrate more rapidly. The bulk of evidence indicates that a catalyst activates the pyridinethione for rearrangement by promoting aromatisation. Mass-spectrometric analysis of an isolated intermediate and kinetic results are consistent with an intermolecular mechanism.

Epidermolysis bullosa simplex (EBS) and epidermolytic ichthyosis (EI) are rare skin fragility diseases characterized by intra-epidermal blistering due to autosomal dominant-negative mutations in basal (KRT5 or KRT14) and suprabasal (KRT1 or KRT10) keratin genes,  respectively. Despite vast knowledge in the disease pathogenesis, the pathomechanisms are not fully understood, and no effective remedies exist. The purpose of this work was to search for keratin gene mutations in EBS patients, to develop in vitro models for studying EBS and EI, and to investigate novel pharmacological approaches for both diseases. We identified both novel and recurrent KRT5 mutations in all studied EBS patients but one which did not show any pathogenic keratin mutations. Using cultured primary keratinocytes from EBS patients, we reproduced a correlation between clinical severity and cytoskeletal instability in vitro. Immortalized keratinocyte cell lines were established from three EBS and three EI patients with different phenotypes using HPV16-E6E7. Only cell lines derived from severely affected patients exhibited spontaneous keratin aggregates under normal culture conditions. However, heat stress significantly induced keratin aggregates in all patient cell lines. This effect was more dramatic in cells from patients with a severe phenotype. In organotypic cultures, the immortalized cells were able to differentiate and form a multilayered epidermis reminiscent of those observed in vivo. Addition of two molecular chaperones, trimethylamine N-oxide dihydrate (TMAO) and sodium 4-phenylbutyrate (4-PBA), reduced the keratin aggregates in both stressed and unstressed EBS and EI keratinocytes, respectively. The mechanism of action of TMAO and 4-PBA was shown to involve the endogenous chaperone system (Heat shock proteins e.g. Hsp70). Besides, MAPK signaling pathways also seemed to be incriminated in the pathogenesis of EBS. Furthermore, depending on which type of keratin is mutated, 4-PBA up-regulated Hsp70 and KRT4 (possibly compensating for mutated KRT1/5), and down-regulated KRT1 and KRT10, which could further assist in protecting EBS and EI cells against stress. In conclusion, novel and recurrent pathogenic keratin mutations have been identified in EBS. Immortalized EBS and EI cell lines that functionally reflect the disease phenotype were established. Two pharmacologic agents, TMAO and 4-PBA, were shown to be promising candidates as novel treatment of heritable keratinopathies in this in vitro model.

Lenvatinib is an oral anticancer drug that belongs to a group of tyrosine kinases, which block signal pathway receptors for development and proliferation of various cancer diseases. Lenvatinib was approved in 2015 for a treatment of progressive, locally spread or metastatic, differentiated thyroid cancer refractory to radioiodine treatment. This thesis presents findings about the metabolism of lenvatinib and identification of enzymes responsible for biotransformation of this drug. Utilizing human and rat hepatic microsomes as well as recombinant cytochromes P450 (CYPs) expressed in SupersomesTM , the metabolism of lenvatinib was studied. Used rat microsomal systems were isolated from the liver of uninduced rats and from the liver of rats in which expression of individual CYPs was induced by CYP inducers. The lenvatinib metabolites were separated by HPLC and identified by mass spectroscopy. Using rat microsomal systems, O-desmethyllenvatinib and lenvatinib N-oxide were produced. The highest amount of these lenvatinib metabolites was produced by microsomes of rats pretreated with pregnenolone carbonitrile that is an inducer of CYP3A. Human hepatic microsomes oxidize lenvatinib to O-desmethyllenvatinib and N-descyklopropyllenvatinib. In the case of rat recombinant CYPs, O-desmethyllenvatinib was...

Elevated serum levels of trimethylamine N-oxide (TMAO) were first associated with increased risk of cardiovascular disease (CVD) 10 years ago. Research has since defined that serum TMAO accumulation is controlled by the diet-microbiome-liver-kidney axis. Choline related nutrients are consumed in excess during over-nutrition from a Western diet. The resultant elevated serum TMAO is investigated across various chronic metabolic diseases and many tissue types. While TMAO is most clearly linked to CVD mechanisms in vascular tissue, its molecular effects on metabolic tissues are unclear. Here we report the current standing of TMAO research in metabolic disease context across relevant metabolic tissues including liver, kidney, brain, adipose, and muscle tissues. This review explores the variable TMAO effects in healthy and diseased conditions. Since impaired pancreatic β-cell function is a hallmark of metabolic disease pathogenesis which are largely unexplored in TMAO research, the following primary research results investigate TMAO effects on in vitro functional β-cell mass in relation to healthy and type 2 diabetes (T2D) conditions. Although we hypothesized that TMAO would aggravate functional β-cell mass, the data demonstrate that TMAO improves the T2D phenotype by increasing insulin secretion and production and reducing oxidative stress. Therefore, this work provides crucial support for the emerging context dependent molecular effects of TMAO during metabolic disease progression.

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The English translation of the chapters written in French is available in Appendix. / La motivation initiale de ce travail provient de l'importance que les composés de coordination ont dans notre vie quotidienne. Leurs propriétés les rendent attrayants pour un large éventail d'applications, dans des domaines allant de la catalyse et de la conversion et stockage de l'énergie solaire jusqu’au domaine des matériaux et des sciences de la vie. Poussée par l'évolution et le progrès général de notre société, la recherche en chimie de coordination moderne évolue vers la complexité au niveau moléculaire, où la Nature représente une source majeure d'inspiration, comme dans le cas de la photosynthèse artificielle et de la chimie métallo-supramoléculaire. Dans le même temps, l'étude des complexes de coordination nourrit la curiosité scientifique et les approches pluridisciplinaires ouvrent de nouveaux mondes fascinants, tout en repoussant les frontières de la connaissance à des niveaux sans précédent. En continuité avec l'étude et le développement de composés de coordination pour des applications spécifiques, le thème central de cette thèse est l'interaction Métal - Ligand et les moyens de la moduler par le design du ligand, afin de générer les propriétés nécessaires pour les applications ciblées. Le design de complexes de coordination est considéré comme un «ensemble de composants modulables» – le ligand: les groupes fonctionnels des atomes donneurs, les substituants et leurs effets électroniques et stériques, le type et la dimension du cycle chélate; l’ion métallique; l'environnement. Les ligands étudiés ici sont les oxydes d’amidines N,N’-disubstitués (AMOXs) (aussi appelés α-aminonitrones ou hydroxyamidines). L'influence du motif de substitution du ligand sur les propriétés des composés est étudiée pour des complexes bis(AMOX) de cobalt(II) et de zinc(II). Les bis(chélates) de cobalt(II) sont plan carré (bas spin) à l'état solide, mais présentent une isomérisation de la structure plan carré (bas spin) vers une structure tétraédrique (haut spin) en solution dans des solvants non-coordinants. L'équilibre d'isomérisation est fortement influencé par le motif de substitution sur le ligand, du fait d’une combinaison de facteurs stériques et électroniques. Une approche théorique (DFT/ TD-DFT) et expérimentale combinée a montré que, dans la famille des chélates bis(AMOX) de zinc(II), le gap optique peut être finement modulé pour de potentielles applications dans des dispositifs optoélectroniques par la modification spécifique des ligands. Un cas spécial de solvatomorphisme a été identifié: des modifications de la géométrie et de l’état de spin sont induites par la présence ou l’absence de liaisons hydrogènes dans un même composé de cobalt(II). L’influence de l'environnement est ainsi illustrée. Les interactions faibles sont les principaux facteurs responsables pour la stabilisation du système vers une combinaison spécifique géométrie - état de spin à l'état fondamental, de façon similaire au contrôle allostérique et aux interactions hôte-invité dans les systèmes biologiques. Des études préliminaires vers des systèmes supramoléculaires à base des ligands AMOX ont été effectuées (assemblées multimétalliques vers des matériaux fonctionnels et des systèmes photocatalytiques pour conversion d'énergie solaire, en particulier la photocatalyse pour la production de H2). J’espère que les résultats et les perspectives présentées dans cette thèse incitent à la poursuite de la chimie de coordination des AMOXs. / The underlying motivation for this work stems from the importance that coordination compounds play in our daily lives. Their properties make them suitable and attractive for a wide range of applications in fields going from catalysis and solar energy conversion/ storage to materials and life sciences. Driven by the general progress of our society, research in modern coordination chemistry evolves toward complexity at the molecular level, with Nature representing a major source of inspiration as shown by artificial photosynthesis and metallosupramolecular chemistry. At the same time, the study of coordination complexes nurtures scientific curiosity, and multidisciplinary approaches are opening fascinating new worlds, while pushing the frontiers of knowledge to unprecedented depths. In line with the study and the development of coordination compounds for specific applications, the central theme of this thesis is the Metal-Ligand interaction and how it can be modulated through ligand design to generate the properties targeted for particular applications. The design of coordination complexes is seen as a ‘collection of adjustable components’ (e.g. the ligand: the donor atoms and their functional groups, the type and the size of the chelating ring, the ring substituents and their electronic and steric effects; the metal-ion; the environment). The ligands under study are the N,N’-disubstituted amidine oxides (AMOXs) (also known as α-aminonitrones/ hydroxyamidines). The influence of the ligand substitution pattern on the properties of the compounds is investigated in series of cobalt(II) and zinc(II) bis(AMOX) complexes. The cobalt(II) bis(chelates) are square-planar (low spin) in the solid state, but show square-planar (low spin) to tetrahedral (high spin) isomerization in solution of non-coordinating solvents. The isomerization equilibrium is highly sensitive to the substitution pattern on the ligand due to a combination of steric and electronic influences. A combined experimental and theoretical approach [DFT and time dependent (TD-DFT)] has shown that in the family of zinc(II) bis(AMOX) chelates, by specific modification of the ligands, the optical band gap can be fine-tuned for potential applications in optoelectronic devices. A special case of hydrogen-bonding-induced geometry and spin change at a cobalt(II) centre within a same cobalt(II) bis(chelate) has been identified. It highlights the influence of the environment on the properties of the complex. Weak interactions are the main factors responsible for biasing the system toward a specific geometry – spin state combination in the ground state, in a similar fashion to allosteric control and host-guest interactions in biological systems. Preliminary studies were conducted toward AMOX-based supramolecular systems: multimetallic assemblies toward functional materials and photocatalytic systems for solar energy-conversion (in particular photocatalysis for H2 production). It is my hope that the above results and the perspectives presented in this work motivate further developments in AMOX coordination chemistry.